RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-208ENST00000520228 PLP2Q04941 152 aa8.33□□□□□ -1.08
SDCBP-208ENST00000520228 ELAVL1Q15717 326 aaKnown RBP8.33□□□□□ -1.08
SDCBP-208ENST00000520228 CSRP2Q16527 193 aa8.33□□□□□ -1.08
SDCBP-208ENST00000520228 DRC7Q8IY82 874 aa8.33□□□□□ -1.08
SDCBP-208ENST00000520228 MDGA1Q8NFP4 955 aa8.33□□□□□ -1.08
SDCBP-208ENST00000520228 TTC8Q8TAM2 541 aa8.33□□□□□ -1.08
SDCBP-208ENST00000520228 SLC35B2Q8TB61 432 aa8.33□□□□□ -1.08
SDCBP-208ENST00000520228 DIS3LQ8TF46 1054 aaKnown RBP8.33□□□□□ -1.08
SDCBP-208ENST00000520228 RAB24Q969Q5 203 aa8.33□□□□□ -1.08
SDCBP-208ENST00000520228 RELTQ969Z4 430 aa8.33□□□□□ -1.08
SDCBP-208ENST00000520228 LRGUKQ96M69 825 aa8.33□□□□□ -1.08
SDCBP-208ENST00000520228 MAP3K14Q99558 947 aa8.33□□□□□ -1.08
SDCBP-208ENST00000520228 PUS3Q9BZE2 481 aaKnown RBP8.33□□□□□ -1.08
SDCBP-208ENST00000520228 TAF1DQ9H5J8 278 aaPredicted RBP8.33□□□□□ -1.08
SDCBP-208ENST00000520228 MOCS1Q9NZB8 636 aa8.33□□□□□ -1.08
SDCBP-208ENST00000520228 CALCOCO1Q9P1Z2 691 aa8.33□□□□□ -1.08
SDCBP-208ENST00000520228 ACTL7AQ9Y615 435 aa8.33□□□□□ -1.08
SDCBP-208ENST00000520228 COL4A1P02462 1669 aa8.33□□□□□ -1.08
SDCBP-208ENST00000520228 CHD4Q14839 1912 aa8.33□□□□□ -1.08
SDCBP-208ENST00000520228 MROH5Q6ZUA9 1318 aa8.32□□□□□ -1.08
SDCBP-208ENST00000520228 DDX60Q8IY21 1712 aaKnown RBP8.32□□□□□ -1.08
SDCBP-208ENST00000520228 B5MCH6 92 aa8.32□□□□□ -1.08
SDCBP-208ENST00000520228 SNAP23O00161 211 aa8.32□□□□□ -1.08
SDCBP-208ENST00000520228 PJA2O43164 708 aa8.32□□□□□ -1.08
SDCBP-208ENST00000520228 GNAI2P04899 355 aa8.32□□□□□ -1.08
SDCBP-208ENST00000520228 EPHX2P34913 555 aa8.32□□□□□ -1.08
SDCBP-208ENST00000520228 EPS15P42566 896 aa8.32□□□□□ -1.08
SDCBP-208ENST00000520228 ALDH1A3P47895 512 aa8.32□□□□□ -1.08
SDCBP-208ENST00000520228 CTXN1P60606 82 aa8.32□□□□□ -1.08
SDCBP-208ENST00000520228 FSTL1Q12841 308 aa8.32□□□□□ -1.08
SDCBP-208ENST00000520228 RAB39AQ14964 217 aa8.32□□□□□ -1.08
SDCBP-208ENST00000520228 MINDY4Q4G0A6 757 aa8.32□□□□□ -1.08
SDCBP-208ENST00000520228 METTL24Q5JXM2 366 aa8.32□□□□□ -1.08
SDCBP-208ENST00000520228 C14orf80Q86SX3 495 aa8.32□□□□□ -1.08
SDCBP-208ENST00000520228 FAM83AQ86UY5 434 aa8.32□□□□□ -1.08
SDCBP-208ENST00000520228 ITPRIPQ8IWB1 547 aa8.32□□□□□ -1.08
SDCBP-208ENST00000520228 ELOA2Q8IYF1 753 aaPredicted RBP8.32□□□□□ -1.08
SDCBP-208ENST00000520228 KLHDC4Q8TBB5 520 aa8.32□□□□□ -1.08
SDCBP-208ENST00000520228 ST8SIA2Q92186 375 aa8.32□□□□□ -1.08
SDCBP-208ENST00000520228 EDAQ92838 391 aa8.32□□□□□ -1.08
SDCBP-208ENST00000520228 C1GALT1C1Q96EU7 318 aa8.32□□□□□ -1.08
SDCBP-208ENST00000520228 CLPTM1LQ96KA5 538 aa8.32□□□□□ -1.08
SDCBP-208ENST00000520228 COA1Q9GZY4 146 aa8.32□□□□□ -1.08
SDCBP-208ENST00000520228 SLC23A1Q9UHI7 598 aa8.32□□□□□ -1.08
SDCBP-208ENST00000520228 RIPOR2Q9Y4F9 1068 aa8.32□□□□□ -1.08
SDCBP-208ENST00000520228 COL4A5P29400 1685 aa8.32□□□□□ -1.08
SDCBP-208ENST00000520228 MED23Q9ULK4 1368 aa8.32□□□□□ -1.08
SDCBP-208ENST00000520228 TBKBP1A7MCY6 615 aa8.31□□□□□ -1.08
SDCBP-208ENST00000520228 K7ESM1 405 aa8.31□□□□□ -1.08
SDCBP-208ENST00000520228 EYA2O00167 538 aa8.31□□□□□ -1.08
SDCBP-208ENST00000520228 PSMD14O00487 310 aa8.31□□□□□ -1.08
SDCBP-208ENST00000520228 SLC16A6O15403 523 aa8.31□□□□□ -1.08
SDCBP-208ENST00000520228 RPLP2P05387 115 aaKnown RBP8.31□□□□□ -1.08
SDCBP-208ENST00000520228 SYN1P17600 705 aa8.31□□□□□ -1.08
SDCBP-208ENST00000520228 KLRK1P26718 216 aa8.31□□□□□ -1.08
SDCBP-208ENST00000520228 RFX5P48382 616 aaPredicted RBP8.31□□□□□ -1.08
SDCBP-208ENST00000520228 TLE1Q04724 770 aa8.31□□□□□ -1.08
SDCBP-208ENST00000520228 BMT2Q1RMZ1 405 aa8.31□□□□□ -1.08
SDCBP-208ENST00000520228 LRRC24Q50LG9 513 aa8.31□□□□□ -1.08
SDCBP-208ENST00000520228 C1QL3Q5VWW1 255 aa8.31□□□□□ -1.08
SDCBP-208ENST00000520228 C15orf52Q6ZUT6 534 aaKnown RBP8.31□□□□□ -1.08
SDCBP-208ENST00000520228 XYLT1Q86Y38 959 aa8.31□□□□□ -1.08
SDCBP-208ENST00000520228 PLXDC1Q8IUK5 500 aa8.31□□□□□ -1.08
SDCBP-208ENST00000520228 ZNF808Q8N4W9 903 aaPredicted RBP8.31□□□□□ -1.08
SDCBP-208ENST00000520228 DCBLD1Q8N8Z6 715 aa8.31□□□□□ -1.08
SDCBP-208ENST00000520228 OR52N2Q8NGI0 321 aa8.31□□□□□ -1.08
SDCBP-208ENST00000520228 MIEF2Q96C03 454 aa8.31□□□□□ -1.08
SDCBP-208ENST00000520228 TMX3Q96JJ7 454 aa8.31□□□□□ -1.08
SDCBP-208ENST00000520228 C8orf48Q96LL4 319 aa8.31□□□□□ -1.08
SDCBP-208ENST00000520228 CPEB1Q9BZB8 566 aaKnown RBP8.31□□□□□ -1.08
SDCBP-208ENST00000520228 FAM30AQ9NZY2 134 aa8.31□□□□□ -1.08
SDCBP-208ENST00000520228 FER1L6Q2WGJ9 1857 aa8.31□□□□□ -1.08
SDCBP-208ENST00000520228 DUOX1Q9NRD9 1551 aa8.31□□□□□ -1.08
SDCBP-208ENST00000520228 TEX33O43247 280 aa8.3□□□□□ -1.08
SDCBP-208ENST00000520228 MFAP3LO75121 409 aa8.3□□□□□ -1.08
SDCBP-208ENST00000520228 ACO1P21399 889 aaKnown RBP8.3□□□□□ -1.08
SDCBP-208ENST00000520228 RPS12P25398 132 aaKnown RBP8.3□□□□□ -1.08
SDCBP-208ENST00000520228 RABGGTBP53611 331 aa8.3□□□□□ -1.08
SDCBP-208ENST00000520228 PTH1RQ03431 593 aa8.3□□□□□ -1.08
SDCBP-208ENST00000520228 UBE4AQ14139 1066 aa8.3□□□□□ -1.08
SDCBP-208ENST00000520228 SEM1Q6ZVN7 128 aa8.3□□□□□ -1.08
SDCBP-208ENST00000520228 HTR3DQ70Z44 454 aa8.3□□□□□ -1.08
SDCBP-208ENST00000520228 RSPH3Q86UC2 560 aa8.3□□□□□ -1.08
SDCBP-208ENST00000520228 WDR75Q8IWA0 830 aaKnown RBP8.3□□□□□ -1.08
SDCBP-208ENST00000520228 GRAMD1CQ8IYS0 662 aa8.3□□□□□ -1.08
SDCBP-208ENST00000520228 ANKRD35Q8N283 1001 aa8.3□□□□□ -1.08
SDCBP-208ENST00000520228 LOXL4Q96JB6 756 aa8.3□□□□□ -1.08
SDCBP-208ENST00000520228 ACO2Q99798 780 aaKnown RBP8.3□□□□□ -1.08
SDCBP-208ENST00000520228 CPPED1Q9BRF8 314 aaPredicted RBP8.3□□□□□ -1.08
SDCBP-208ENST00000520228 MRI1Q9BV20 369 aa8.3□□□□□ -1.08
SDCBP-208ENST00000520228 SIL1Q9H173 461 aa8.3□□□□□ -1.08
SDCBP-208ENST00000520228 EPC1Q9H2F5 836 aa8.3□□□□□ -1.08
SDCBP-208ENST00000520228 ADARB2Q9NS39 739 aaKnown RBP8.3□□□□□ -1.08
SDCBP-208ENST00000520228 CNOT7Q9UIV1 285 aaKnown RBP8.3□□□□□ -1.08
SDCBP-208ENST00000520228 ST6GALNAC2Q9UJ37 374 aa8.3□□□□□ -1.08
SDCBP-208ENST00000520228 CIAO1O76071 339 aa8.29□□□□□ -1.08
SDCBP-208ENST00000520228 IPO13O94829 963 aaKnown RBP8.29□□□□□ -1.08
SDCBP-208ENST00000520228 PDE8BO95263 885 aa8.29□□□□□ -1.08
SDCBP-208ENST00000520228 ALDH2P05091 517 aa8.29□□□□□ -1.08
SDCBP-208ENST00000520228 GNAT2P19087 354 aa8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms