RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 GNL1P36915 607 aaPredicted RBP11.65□□□□□ -0.54
LIMCH1-217ENST00000512946 GCLCP48506 637 aaPredicted RBP11.65□□□□□ -0.54
LIMCH1-217ENST00000512946 STARP49675 285 aa11.65□□□□□ -0.54
LIMCH1-217ENST00000512946 IL5RAQ01344 420 aa11.65□□□□□ -0.54
LIMCH1-217ENST00000512946 STX4Q12846 297 aa11.65□□□□□ -0.54
LIMCH1-217ENST00000512946 TYSND1Q2T9J0 566 aa11.65□□□□□ -0.54
LIMCH1-217ENST00000512946 TAF8Q7Z7C8 310 aa11.65□□□□□ -0.54
LIMCH1-217ENST00000512946 TRMT2AQ8IZ69 625 aaKnown RBP11.65□□□□□ -0.54
LIMCH1-217ENST00000512946 RNASE11Q8TAA1 199 aaKnown RBP11.65□□□□□ -0.54
LIMCH1-217ENST00000512946 AGR3Q8TD06 166 aa11.65□□□□□ -0.54
LIMCH1-217ENST00000512946 RIN2Q8WYP3 895 aaPredicted RBP11.65□□□□□ -0.54
LIMCH1-217ENST00000512946 CAMKK2Q96RR4 588 aa11.65□□□□□ -0.54
LIMCH1-217ENST00000512946 INTS13Q9NVM9 706 aa11.65□□□□□ -0.54
LIMCH1-217ENST00000512946 DDX18Q9NVP1 670 aaKnown RBP11.65□□□□□ -0.54
LIMCH1-217ENST00000512946 ABCB11O95342 1321 aa11.65□□□□□ -0.55
LIMCH1-217ENST00000512946 E9PBE3 544 aa11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 RPS6KA5O75582 802 aa11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 CD2BP2O95400 341 aaKnown RBP11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 APRTP07741 180 aa11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 BMP3P12645 472 aa11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 COILP38432 576 aaPredicted RBP11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 ACLYP53396 1101 aa11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 MAPK7Q13164 816 aa11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 TTLL9Q3SXZ7 439 aa11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 PALB2Q86YC2 1186 aa11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 OR7A2PQ8NGA2 310 aa11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 CCSER1Q9C0I3 900 aa11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 KCNF1Q9H3M0 494 aa11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 BAIAP2Q9UQB8 552 aa11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 EXTL3O43909 919 aa11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 MYL12AP19105 171 aa11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 GCLMP48507 274 aa11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 PTPN21Q16825 1174 aa11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 TCHHL1Q5QJ38 904 aaPredicted RBP11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 TMEM26Q6ZUK4 368 aa11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 AP3S1Q92572 193 aa11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 ELMO2Q96JJ3 720 aa11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 NSMCE2Q96MF7 247 aa11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 AKAP7Q9P0M2 348 aaPredicted RBP11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 ABCC2Q92887 1545 aa11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 LINC00854A0A1B0GVQ3 168 aa11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 SAGE2PA6NJ88 616 aa11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 CDC40O60508 579 aaKnown RBP eCLIP11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 PGK2P07205 417 aa11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 RBP1P09455 135 aa11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 GPC3P51654 580 aa11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 ATP12AP54707 1039 aa11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 GALCP54803 685 aa11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 CSE1LP55060 971 aaKnown RBP11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 EFR3AQ14156 821 aa11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 NR1D2Q14995 579 aa11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 ATP13A5Q4VNC0 1218 aa11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 SAMD4BQ5PRF9 694 aaKnown RBP11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 KIAA1841Q6NSI8 718 aa11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 AADATQ8N5Z0 425 aa11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 PDPRQ8NCN5 879 aa11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 ZNF398Q8TD17 642 aa11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 HPS1Q92902 700 aa11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 CENPTQ96BT3 561 aa11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 CCNB1IP1Q9NPC3 277 aa11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 TRMT6Q9UJA5 497 aaKnown RBP11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 SLC30A1Q9Y6M5 507 aa11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 A0A1W2PP64 1363 aa11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 FAM170AA1A519 330 aa11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 SYNDIG1LA6NDD5 238 aa11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 LSM1O15116 133 aaKnown RBP11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 GAS2O43903 313 aaKnown RBP11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 FARP2O94887 1054 aaPredicted RBP11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 ME2P23368 584 aa11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 ITGA8P53708 1063 aa11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 TRAF2Q12933 501 aa11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 MAD2L1Q13257 205 aaPredicted RBP11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 TNFAIP8L3Q5GJ75 292 aa11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 FAM102AQ5T9C2 384 aaPredicted RBP11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 RC3H1Q5TC82 1133 aaKnown RBP11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 BROXQ5VW32 411 aa11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 DENND5AQ6IQ26 1287 aa11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 DENND1BQ6P3S1 775 aa11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 AKAP14Q86UN6 197 aa11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 SFRP1Q8N474 314 aa11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 ATG16L2Q8NAA4 619 aa11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 SLC35G2Q8TBE7 412 aa11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 MAGEC3Q8TD91 643 aa11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 ZKSCAN4Q969J2 545 aaPredicted RBP11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 C18orf8Q96DM3 657 aa11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 MKNK1Q9BUB5 465 aa11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 SH3BP4Q9P0V3 963 aa11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 PCSK1NQ9UHG2 260 aa11.64□□□□□ -0.55
LIMCH1-217ENST00000512946 M0QYV0 167 aa11.63□□□□□ -0.55
LIMCH1-217ENST00000512946 WWP2O00308 870 aa11.63□□□□□ -0.55
LIMCH1-217ENST00000512946 HAT1O14929 419 aa11.63□□□□□ -0.55
LIMCH1-217ENST00000512946 ATP9BO43861 1147 aa11.63□□□□□ -0.55
LIMCH1-217ENST00000512946 MSH3P20585 1137 aa11.63□□□□□ -0.55
LIMCH1-217ENST00000512946 PRELPP51888 382 aa11.63□□□□□ -0.55
LIMCH1-217ENST00000512946 PFKFB3Q16875 520 aaPredicted RBP11.63□□□□□ -0.55
LIMCH1-217ENST00000512946 FBXO42Q6P3S6 717 aa11.63□□□□□ -0.55
LIMCH1-217ENST00000512946 ZNF333Q96JL9 665 aa11.63□□□□□ -0.55
LIMCH1-217ENST00000512946 TNIP3Q96KP6 325 aa11.63□□□□□ -0.55
LIMCH1-217ENST00000512946 LEMD3Q9Y2U8 911 aa11.63□□□□□ -0.55
LIMCH1-217ENST00000512946 DYNC1LI2O43237 492 aaPredicted RBP11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms