RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 LRCH4O75427 683 aa18.87■□□□□ 0.61
VIM-206ENST00000487938 CDH5P33151 784 aaPredicted RBP18.87■□□□□ 0.61
VIM-206ENST00000487938 PTPN7P35236 360 aa18.87■□□□□ 0.61
VIM-206ENST00000487938 CTCFP49711 727 aaPredicted RBP18.87■□□□□ 0.61
VIM-206ENST00000487938 PSMC1P62191 440 aaKnown RBP18.87■□□□□ 0.61
VIM-206ENST00000487938 GRM1Q13255 1194 aa18.87■□□□□ 0.61
VIM-206ENST00000487938 SPARCL1Q14515 664 aa18.87■□□□□ 0.61
VIM-206ENST00000487938 HIF1AQ16665 826 aa18.87■□□□□ 0.61
VIM-206ENST00000487938 TMEM132AQ24JP5 1023 aa18.87■□□□□ 0.61
VIM-206ENST00000487938 IER5Q5VY09 327 aa18.87■□□□□ 0.61
VIM-206ENST00000487938 NIPA2Q8N8Q9 360 aa18.87■□□□□ 0.61
VIM-206ENST00000487938 TRAPPC12Q8WVT3 735 aa18.87■□□□□ 0.61
VIM-206ENST00000487938 GRAMD1AQ96CP6 724 aa18.87■□□□□ 0.61
VIM-206ENST00000487938 UBN1Q9NPG3 1134 aa18.87■□□□□ 0.61
VIM-206ENST00000487938 LTBP3Q9NS15 1303 aa18.87■□□□□ 0.61
VIM-206ENST00000487938 PRPF4O43172 522 aaKnown RBP eCLIP18.86■□□□□ 0.61
VIM-206ENST00000487938 SLC25A11Q02978 314 aaKnown RBP18.86■□□□□ 0.61
VIM-206ENST00000487938 TFDP1Q14186 410 aa18.86■□□□□ 0.61
VIM-206ENST00000487938 NEDD9Q14511 834 aa18.86■□□□□ 0.61
VIM-206ENST00000487938 TAF5Q15542 800 aa18.86■□□□□ 0.61
VIM-206ENST00000487938 ACCSLQ4AC99 568 aa18.86■□□□□ 0.61
VIM-206ENST00000487938 TMEM192Q8IY95 271 aa18.86■□□□□ 0.61
VIM-206ENST00000487938 ARHGEF3Q9NR81 526 aa18.86■□□□□ 0.61
VIM-206ENST00000487938 SHOC2Q9UQ13 582 aa18.86■□□□□ 0.61
VIM-206ENST00000487938 CLUHO75153 1309 aa18.86■□□□□ 0.61
VIM-206ENST00000487938 TCRBV7S3A2A0A539 114 aa18.86■□□□□ 0.61
VIM-206ENST00000487938 SIGLEC16A6NMB1 481 aa18.86■□□□□ 0.61
VIM-206ENST00000487938 KDELR1P24390 212 aa18.86■□□□□ 0.61
VIM-206ENST00000487938 RIPK1Q13546 671 aa18.86■□□□□ 0.61
VIM-206ENST00000487938 ZBTB8OSQ8IWT0 167 aa18.86■□□□□ 0.61
VIM-206ENST00000487938 AGAP11Q8TF27 550 aa18.86■□□□□ 0.61
VIM-206ENST00000487938 PYROXD1Q8WU10 500 aa18.86■□□□□ 0.61
VIM-206ENST00000487938 CNKSR2Q8WXI2 1034 aa18.86■□□□□ 0.61
VIM-206ENST00000487938 CPT1BQ92523 772 aa18.86■□□□□ 0.61
VIM-206ENST00000487938 NLRP4Q96MN2 994 aa18.86■□□□□ 0.61
VIM-206ENST00000487938 MYLK2Q9H1R3 596 aa18.86■□□□□ 0.61
VIM-206ENST00000487938 RABGEF1Q9UJ41 708 aa18.86■□□□□ 0.61
VIM-206ENST00000487938 FARP1Q9Y4F1 1045 aaPredicted RBP18.86■□□□□ 0.61
VIM-206ENST00000487938 INO80B-WBP1J3KQ70 363 aa18.85■□□□□ 0.61
VIM-206ENST00000487938 ARIH2O95376 493 aa18.85■□□□□ 0.61
VIM-206ENST00000487938 TNNC2P02585 160 aa18.85■□□□□ 0.61
VIM-206ENST00000487938 KRT4P19013 534 aa18.85■□□□□ 0.61
VIM-206ENST00000487938 RPL22P35268 128 aaKnown RBP18.85■□□□□ 0.61
VIM-206ENST00000487938 NRLP54845 237 aa18.85■□□□□ 0.61
VIM-206ENST00000487938 YWHAEP62258 255 aaKnown RBP18.85■□□□□ 0.61
VIM-206ENST00000487938 ACVR2BQ13705 512 aa18.85■□□□□ 0.61
VIM-206ENST00000487938 HSDL1Q3SXM5 330 aa18.85■□□□□ 0.61
VIM-206ENST00000487938 EEF1DP3Q658K8 133 aa18.85■□□□□ 0.61
VIM-206ENST00000487938 C3orf62Q6ZUJ4 267 aa18.85■□□□□ 0.61
VIM-206ENST00000487938 APOBEC3FQ8IUX4 373 aaKnown RBP18.85■□□□□ 0.61
VIM-206ENST00000487938 UNC45BQ8IWX7 931 aa18.85■□□□□ 0.61
VIM-206ENST00000487938 RSAD2Q8WXG1 361 aa18.85■□□□□ 0.61
VIM-206ENST00000487938 STAMBPL1Q96FJ0 436 aa18.85■□□□□ 0.61
VIM-206ENST00000487938 CPXM1Q96SM3 734 aa18.85■□□□□ 0.61
VIM-206ENST00000487938 INO80BQ9C086 356 aaPredicted RBP18.85■□□□□ 0.61
VIM-206ENST00000487938 SYNCQ9H7C4 482 aa18.85■□□□□ 0.61
VIM-206ENST00000487938 METTL5Q9NRN9 209 aaKnown RBP18.85■□□□□ 0.61
VIM-206ENST00000487938 GGA3Q9NZ52 723 aa18.85■□□□□ 0.61
VIM-206ENST00000487938 STARD13Q9Y3M8 1113 aa18.85■□□□□ 0.61
VIM-206ENST00000487938 BRCA1P38398 1863 aaKnown RBP18.85■□□□□ 0.61
VIM-206ENST00000487938 MAGEB2O15479 319 aa18.85■□□□□ 0.61
VIM-206ENST00000487938 POLR2BP30876 1174 aaKnown RBP18.85■□□□□ 0.61
VIM-206ENST00000487938 HHATQ5VTY9 493 aa18.85■□□□□ 0.61
VIM-206ENST00000487938 CDCA2Q69YH5 1023 aaPredicted RBP18.85■□□□□ 0.61
VIM-206ENST00000487938 LBX2Q6XYB7 198 aa18.85■□□□□ 0.61
VIM-206ENST00000487938 ASRGL1Q7L266 308 aa18.85■□□□□ 0.61
VIM-206ENST00000487938 GIMAP7Q8NHV1 300 aa18.85■□□□□ 0.61
VIM-206ENST00000487938 HSPH1Q92598 858 aa18.85■□□□□ 0.61
VIM-206ENST00000487938 ANKRD36BP1Q96IX9 119 aa18.85■□□□□ 0.61
VIM-206ENST00000487938 PSMC3IPQ9P2W1 217 aaPredicted RBP18.85■□□□□ 0.61
VIM-206ENST00000487938 STRIP2Q9ULQ0 834 aa18.85■□□□□ 0.61
VIM-206ENST00000487938 SMG5Q9UPR3 1016 aaKnown RBP18.85■□□□□ 0.61
VIM-206ENST00000487938 ZBTB42B2RXF5 422 aa18.84■□□□□ 0.61
VIM-206ENST00000487938 ERBB2P04626 1255 aa18.84■□□□□ 0.61
VIM-206ENST00000487938 RPSAP08865 295 aaKnown RBP18.84■□□□□ 0.61
VIM-206ENST00000487938 GEMIN4P57678 1058 aaKnown RBP18.84■□□□□ 0.61
VIM-206ENST00000487938 SURF1Q15526 300 aa18.84■□□□□ 0.61
VIM-206ENST00000487938 HADHQ16836 314 aaKnown RBP18.84■□□□□ 0.61
VIM-206ENST00000487938 ATF7IP2Q5U623 682 aa18.84■□□□□ 0.61
VIM-206ENST00000487938 LVRNQ6Q4G3 990 aa18.84■□□□□ 0.61
VIM-206ENST00000487938 METTL7BQ6UX53 244 aa18.84■□□□□ 0.61
VIM-206ENST00000487938 POLNQ7Z5Q5 900 aa18.84■□□□□ 0.61
VIM-206ENST00000487938 RFX6Q8HWS3 928 aa18.84■□□□□ 0.61
VIM-206ENST00000487938 PPIL6Q8IXY8 311 aa18.84■□□□□ 0.61
VIM-206ENST00000487938 KCTD6Q8NC69 237 aa18.84■□□□□ 0.61
VIM-206ENST00000487938 LRRC8CQ8TDW0 803 aa18.84■□□□□ 0.61
VIM-206ENST00000487938 SDCBP2Q9H190 292 aa18.84■□□□□ 0.61
VIM-206ENST00000487938 C12orf65Q9H3J6 166 aaKnown RBP18.84■□□□□ 0.61
VIM-206ENST00000487938 SNCAIPQ9Y6H5 919 aa18.84■□□□□ 0.61
VIM-206ENST00000487938 WDR91A4D1P6 747 aa18.84■□□□□ 0.61
VIM-206ENST00000487938 TYROBPO43914 113 aa18.84■□□□□ 0.61
VIM-206ENST00000487938 KRT7P08729 469 aa18.84■□□□□ 0.61
VIM-206ENST00000487938 CXCL8P10145 99 aa18.84■□□□□ 0.61
VIM-206ENST00000487938 FGFR1P11362 822 aa18.84■□□□□ 0.61
VIM-206ENST00000487938 MYO1EQ12965 1108 aa18.84■□□□□ 0.61
VIM-206ENST00000487938 MXD4Q14582 209 aaPredicted RBP18.84■□□□□ 0.61
VIM-206ENST00000487938 SYCP2LQ5T4T6 812 aa18.84■□□□□ 0.61
VIM-206ENST00000487938 MPZL3Q6UWV2 235 aa18.84■□□□□ 0.61
VIM-206ENST00000487938 PCGF5Q86SE9 256 aa18.84■□□□□ 0.61
VIM-206ENST00000487938 NAT8LQ8N9F0 302 aa18.84■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 116.3 ms