RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 CDR2LQ86X02 465 aaPredicted RBP8.82□□□□□ -1
HMGB1-203ENST00000341423 TMEM86AQ8N2M4 240 aa8.82□□□□□ -1
HMGB1-203ENST00000341423 DNAJC28Q9NX36 388 aa8.82□□□□□ -1
HMGB1-203ENST00000341423 SNTG2Q9NY99 539 aa8.82□□□□□ -1
HMGB1-203ENST00000341423 CYP39A1Q9NYL5 469 aa8.82□□□□□ -1
HMGB1-203ENST00000341423 ADAM28Q9UKQ2 775 aa8.82□□□□□ -1
HMGB1-203ENST00000341423 CTAGE9A4FU28 777 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 MAPK13O15264 365 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 PIM1P11309 404 aaPredicted RBP8.81□□□□□ -1
HMGB1-203ENST00000341423 PTGS1P23219 599 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 AKAP5P24588 427 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 DDX6P26196 483 aaKnown RBP eCLIP8.81□□□□□ -18e-6■□□□□ 9.7
HMGB1-203ENST00000341423 PSEN1P49768 467 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 AMZ1Q400G9 498 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 EFHC1Q5JVL4 640 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 TEX35Q5T0J7 233 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 MPZL3Q6UWV2 235 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 METTL3Q86U44 580 aaKnown RBP8.81□□□□□ -1
HMGB1-203ENST00000341423 TREML1Q86YW5 311 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 LIX1Q8N485 282 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 UBXN4Q92575 508 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 RNPEPQ9H4A4 650 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 EPB41L5Q9HCM4 733 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 LATS2Q9NRM7 1088 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 BAG5Q9UL15 447 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 TRIM35Q9UPQ4 493 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 ABCA6Q8N139 1617 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 CCDC78A2IDD5 438 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 POTEFA5A3E0 1075 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 SUPT3HB4E1H0 165 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 CBX4O00257 560 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 TSPAN3O60637 253 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 VIPP01282 170 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 POM121L1PQ3SYA9 428 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 VWA2Q5GFL6 755 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 PATL1Q86TB9 770 aaKnown RBP8.81□□□□□ -1
HMGB1-203ENST00000341423 OXR1Q8N573 874 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 RAPGEF5Q92565 580 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 P2RY13Q9BPV8 354 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP8.81□□□□□ -11e-6■■■■□ 22.9
HMGB1-203ENST00000341423 C17orf75Q9HAS0 396 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 TMEM9BQ9NQ34 198 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 ANAPC4Q9UJX5 808 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 KCNH3Q9ULD8 1083 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 RBAK-RBAKDNI3L0D1 243 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 MCF2LO15068 1137 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 SULT1E1P49888 294 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 EVCP57679 992 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 ORC2Q13416 577 aaPredicted RBP8.81□□□□□ -1
HMGB1-203ENST00000341423 TARBP2Q15633 366 aaKnown RBP8.81□□□□□ -1
HMGB1-203ENST00000341423 STX1AQ16623 288 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 LYPLAL1Q5VWZ2 237 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 APOA5Q6Q788 366 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 GAS2L3Q86XJ1 694 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 RNF214Q8ND24 703 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 CDC6Q99741 560 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 TRIM7Q9C029 511 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 DMAP1Q9NPF5 467 aaPredicted RBP8.81□□□□□ -1
HMGB1-203ENST00000341423 CACNA2D2Q9NY47 1150 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 JRKLQ9Y4A0 524 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 TIMM13Q9Y5L4 95 aaPredicted RBP8.81□□□□□ -1
HMGB1-203ENST00000341423 TTLL8A6PVC2 850 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 NEDD8-MDP1E9PL57 170 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 PITPNM1O00562 1244 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 OGTO15294 1046 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 KRT33AO76009 404 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 KRT38O76015 456 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 TGM2P21980 687 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 LIFRP42702 1097 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 RENBPP51606 427 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 RPS15P62841 145 aaKnown RBP8.81□□□□□ -1
HMGB1-203ENST00000341423 EXOC3L4Q17RC7 722 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 TMTC3Q6ZXV5 915 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 MMGT1Q8N4V1 131 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 CD101Q93033 1021 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 MRPL38Q96DV4 380 aaKnown RBP8.81□□□□□ -1
HMGB1-203ENST00000341423 ZNF274Q96GC6 653 aaPredicted RBP8.81□□□□□ -1
HMGB1-203ENST00000341423 EIF3CQ99613 913 aaKnown RBP8.81□□□□□ -1
HMGB1-203ENST00000341423 SPZ1Q9BXG8 430 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 CFAP97Q9P2B7 532 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 DNMT3LQ9UJW3 386 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 CCDC151A5D8V7 595 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 PDHBP11177 359 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 VARSP26640 1264 aaKnown RBP8.81□□□□□ -1
HMGB1-203ENST00000341423 CLK3P49761 638 aaKnown RBP8.81□□□□□ -1
HMGB1-203ENST00000341423 ASPHQ12797 758 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 HIST2H2ACQ16777 129 aaPredicted RBP8.81□□□□□ -1
HMGB1-203ENST00000341423 HIST2H2AA3Q6FI13 130 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 TMEM270Q6UE05 265 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 MICALCLQ6ZW33 695 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 TAS1R3Q7RTX0 852 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 CTAGE3PQ8IX95 158 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 ATPAF2Q8N5M1 289 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 CNDP1Q96KN2 507 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 KXD1Q9BQD3 176 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 MORF4L1Q9UBU8 362 aa8.81□□□□□ -1
HMGB1-203ENST00000341423 LRRC14BA6NHZ5 514 aa8.8□□□□□ -1
HMGB1-203ENST00000341423 PLA2G4AP47712 749 aa8.8□□□□□ -1
HMGB1-203ENST00000341423 CDR2Q01850 454 aa8.8□□□□□ -1
HMGB1-203ENST00000341423 NR5A1Q13285 461 aa8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms