RNA–Protein interactions for RNA: YMR173W

DDR48, Transcript of DNA damage-responsive protein, yeast

Gene DDR48, Length 1,293 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
DDR48	YMR173W	SCS22	Q6Q595	175 aa		0.65	□□□□□ -2.31
DDR48	YMR173W	QCR6	P00127	147 aa		0.64	□□□□□ -2.31
DDR48	YMR173W	YGL041W-A	P0C5N3	154 aa		0.64	□□□□□ -2.31
DDR48	YMR173W	HYP2	P23301	157 aa	Known RBP	0.64	□□□□□ -2.31
DDR48	YMR173W	MRS4	P23500	304 aa		0.64	□□□□□ -2.31
DDR48	YMR173W	ATG8	P38182	117 aa	RIP-Chip data	0.64	□□□□□ -2.31	not detected
DDR48	YMR173W	YBR027C	P38220	110 aa		0.64	□□□□□ -2.31
DDR48	YMR173W	YEL014C	P39999	101 aa		0.64	□□□□□ -2.31
DDR48	YMR173W	GPI2	P46961	280 aa		0.64	□□□□□ -2.31
DDR48	YMR173W	MOG1	P47123	218 aa		0.64	□□□□□ -2.31
DDR48	YMR173W	RCF2	P53721	224 aa		0.64	□□□□□ -2.31
DDR48	YMR173W	PKR1	Q03880	122 aa	Known RBP	0.64	□□□□□ -2.31
DDR48	YMR173W	AVO2	Q04749	426 aa		0.64	□□□□□ -2.31
DDR48	YMR173W	RFU1	Q08003	200 aa		0.64	□□□□□ -2.31
DDR48	YMR173W	RIB3	Q99258	208 aa		0.64	□□□□□ -2.31
DDR48	YMR173W	ADE6	P38972	1358 aa	Known RBP	0.64	□□□□□ -2.31
DDR48	YMR173W	RPC19	P28000	142 aa	Known RBP	0.63	□□□□□ -2.31
DDR48	YMR173W	ARC19	P33204	171 aa	Known RBP	0.63	□□□□□ -2.31
DDR48	YMR173W	MRPL24	P36525	258 aa	Predicted RBP	0.63	□□□□□ -2.31
DDR48	YMR173W	SLM6	P38343	150 aa		0.63	□□□□□ -2.31
DDR48	YMR173W	YGL193C	P53097	103 aa		0.63	□□□□□ -2.31
DDR48	YMR173W	EFM5	P53200	248 aa	Known RBP	0.63	□□□□□ -2.31
DDR48	YMR173W	RAV2	Q03956	351 aa		0.63	□□□□□ -2.31
DDR48	YMR173W	IRC19	Q07843	230 aa		0.63	□□□□□ -2.31
DDR48	YMR173W	YPR202W	Q08993	238 aa		0.63	□□□□□ -2.31
DDR48	YMR173W	FCY1	Q12178	158 aa		0.63	□□□□□ -2.31
DDR48	YMR173W	MHF1	Q3E835	90 aa		0.63	□□□□□ -2.31
DDR48	YMR173W	TAF2	P23255	1407 aa		0.63	□□□□□ -2.31
DDR48	YMR173W	DUR1,2	P32528	1835 aa	Known RBP	0.62	□□□□□ -2.31
DDR48	YMR173W	DDR48	P18899	430 aa	Known RBP	0.62	□□□□□ -2.31
DDR48	YMR173W	PHO13	P19881	312 aa		0.62	□□□□□ -2.31
DDR48	YMR173W	HSP12	P22943	109 aa	Known RBP	0.62	□□□□□ -2.31
DDR48	YMR173W	YCR001W	P25347	104 aa		0.62	□□□□□ -2.31
DDR48	YMR173W	GPI11	Q06636	219 aa		0.62	□□□□□ -2.31
DDR48	YMR173W	YOR072W	Q08486	104 aa		0.62	□□□□□ -2.31
DDR48	YMR173W	RIF1	P29539	1916 aa		0.62	□□□□□ -2.31
DDR48	YMR173W	SPA2	P23201	1466 aa	Known RBP	0.61	□□□□□ -2.31
DDR48	YMR173W	YDR366C	P87287	132 aa		0.61	□□□□□ -2.31
DDR48	YMR173W	IRC21	Q04772	201 aa		0.61	□□□□□ -2.31
DDR48	YMR173W	CMC4	Q3E7A9	73 aa		0.61	□□□□□ -2.31
DDR48	YMR173W	KTI11	Q3E840	82 aa		0.61	□□□□□ -2.31
DDR48	YMR173W	YOL013W-A	P0C272	63 aa	Predicted RBP	0.6	□□□□□ -2.31
DDR48	YMR173W	NHP6A	P11632	93 aa	Known RBP	0.6	□□□□□ -2.31
DDR48	YMR173W	HSP150	P32478	413 aa		0.6	□□□□□ -2.31
DDR48	YMR173W	IPI1	P38803	334 aa	Predicted RBP	0.6	□□□□□ -2.31
DDR48	YMR173W	IPT1	P38954	527 aa		0.6	□□□□□ -2.31
DDR48	YMR173W	LSM8	P47093	109 aa	Known RBP	0.6	□□□□□ -2.31
DDR48	YMR173W	RBL2	P48606	106 aa	Known RBP	0.6	□□□□□ -2.31
DDR48	YMR173W	YCL001W-A	P87012	153 aa		0.6	□□□□□ -2.31
DDR48	YMR173W	SEN15	Q04675	128 aa		0.6	□□□□□ -2.31
DDR48	YMR173W	SMD2	Q06217	110 aa	Known RBP	0.6	□□□□□ -2.31
DDR48	YMR173W	YHR213W-B	Q8TGK1	99 aa		0.6	□□□□□ -2.31
DDR48	YMR173W	PET20	Q99373	253 aa		0.6	□□□□□ -2.31
DDR48	YMR173W	RPL33A	P05744	107 aa	Known RBP	0.59	□□□□□ -2.31
DDR48	YMR173W	HAP2	P06774	265 aa		0.59	□□□□□ -2.31
DDR48	YMR173W	RPS22A	P0C0W1	130 aa	Known RBP	0.59	□□□□□ -2.31
DDR48	YMR173W	PET54	P10834	293 aa		0.59	□□□□□ -2.31
DDR48	YMR173W	FUN14	P18411	198 aa		0.59	□□□□□ -2.31
DDR48	YMR173W	SRL3	P36167	246 aa		0.59	□□□□□ -2.31
DDR48	YMR173W	YJL218W	P40892	196 aa	Known RBP	0.59	□□□□□ -2.31
DDR48	YMR173W	DIE2	P50076	525 aa		0.59	□□□□□ -2.31
DDR48	YMR173W	SPG1	P50088	95 aa		0.59	□□□□□ -2.31
DDR48	YMR173W	EST3	Q03096	181 aa		0.59	□□□□□ -2.31
DDR48	YMR173W	YPR153W	Q06537	140 aa		0.59	□□□□□ -2.31
DDR48	YMR173W	HUT1	Q12520	339 aa		0.59	□□□□□ -2.31
DDR48	YMR173W	RPS22B	Q3E7Y3	130 aa	Known RBP	0.59	□□□□□ -2.31
DDR48	YMR173W	RPS1B	P23248	255 aa	Known RBP	0.58	□□□□□ -2.32
DDR48	YMR173W	RME1	P32338	300 aa	Known RBP	0.58	□□□□□ -2.32
DDR48	YMR173W	HHY1	P39982	102 aa		0.58	□□□□□ -2.32
DDR48	YMR173W	YGR201C	P42936	225 aa		0.58	□□□□□ -2.32
DDR48	YMR173W	YGR039W	P53225	103 aa		0.58	□□□□□ -2.32
DDR48	YMR173W	YNL122C	P53921	115 aa	Predicted RBP	0.58	□□□□□ -2.32
DDR48	YMR173W	YNL019C	P53975	284 aa		0.58	□□□□□ -2.32
DDR48	YMR173W	SED1	Q01589	338 aa		0.58	□□□□□ -2.32
DDR48	YMR173W	NAT5	Q08689	176 aa		0.58	□□□□□ -2.32
DDR48	YMR173W	PRM3	Q08931	133 aa		0.58	□□□□□ -2.32
DDR48	YMR173W	COX5B	P00425	151 aa		0.57	□□□□□ -2.32
DDR48	YMR173W	FYV5	P25585	152 aa		0.57	□□□□□ -2.32
DDR48	YMR173W	YHR140W	P38842	239 aa		0.57	□□□□□ -2.32
DDR48	YMR173W	PHB1	P40961	287 aa		0.57	□□□□□ -2.32
DDR48	YMR173W	LSM1	P47017	172 aa	Known RBP	0.57	□□□□□ -2.32
DDR48	YMR173W	MGR2	Q02889	113 aa		0.57	□□□□□ -2.32
DDR48	YMR173W	COF1	Q03048	143 aa	Known RBP	0.57	□□□□□ -2.32
DDR48	YMR173W	RAF1	Q06891	181 aa		0.57	□□□□□ -2.32
DDR48	YMR173W	MED11	Q99278	115 aa		0.57	□□□□□ -2.32
DDR48	YMR173W	ROM2	P51862	1356 aa	Known RBP	0.57	□□□□□ -2.32
DDR48	YMR173W	YGL014C-A	P0C5N1	53 aa		0.56	□□□□□ -2.32
DDR48	YMR173W	MRPL44	P19956	98 aa		0.56	□□□□□ -2.32
DDR48	YMR173W	MVB12	P42939	101 aa		0.56	□□□□□ -2.32
DDR48	YMR173W	YJL009W	P47078	108 aa		0.56	□□□□□ -2.32
DDR48	YMR173W	YGL149W	P53116	101 aa		0.56	□□□□□ -2.32
DDR48	YMR173W	YMR320W	Q04897	101 aa		0.56	□□□□□ -2.32
DDR48	YMR173W	SOM1	Q05676	74 aa		0.56	□□□□□ -2.32
DDR48	YMR173W	ATP14	Q12349	124 aa		0.56	□□□□□ -2.32
DDR48	YMR173W	COA6	Q3E846	104 aa		0.56	□□□□□ -2.32
DDR48	YMR173W	HAP3	P13434	144 aa		0.55	□□□□□ -2.32
DDR48	YMR173W	ANB1	P19211	157 aa		0.55	□□□□□ -2.32
DDR48	YMR173W	SUI1	P32911	108 aa	Known RBP	0.55	□□□□□ -2.32
DDR48	YMR173W	RPS1A	P33442	255 aa	Known RBP	0.55	□□□□□ -2.32
DDR48	YMR173W	UTP11	P34247	250 aa	Predicted RBP	0.55	□□□□□ -2.32

Retrieved 100 of 5,963 RNA–protein pairs in 24.3 ms