RNA–Protein interactions for RNA: YLR440C

SEC39, Transcript of Component of the Dsl1p tethering complex, yeast

Gene SEC39, Length 2,130 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SEC39	YLR440C	PAU22	P0CE87	164 aa		4.22	□□□□□ -1.73
SEC39	YLR440C	PAU3	P25610	124 aa		4.22	□□□□□ -1.73
SEC39	YLR440C	RPL16B	P26785	198 aa	Known RBP	4.22	□□□□□ -1.73
SEC39	YLR440C	SFT2	P38166	215 aa		4.22	□□□□□ -1.73
SEC39	YLR440C	YER181C	P40097	107 aa		4.22	□□□□□ -1.73
SEC39	YLR440C	UBP8	P50102	471 aa		4.22	□□□□□ -1.73
SEC39	YLR440C	KNH1	P50112	268 aa		4.22	□□□□□ -1.73
SEC39	YLR440C	ADD37	Q03233	198 aa		4.22	□□□□□ -1.73
SEC39	YLR440C	ARR3	Q06598	404 aa		4.22	□□□□□ -1.73
SEC39	YLR440C	YDL157C	Q12082	118 aa		4.22	□□□□□ -1.73
SEC39	YLR440C	TSC3	Q3E790	80 aa		4.22	□□□□□ -1.73
SEC39	YLR440C	YPL229W	Q99395	206 aa		4.22	□□□□□ -1.73
SEC39	YLR440C	TAD3	Q9URQ3	322 aa		4.22	□□□□□ -1.73
SEC39	YLR440C	SPT4	P32914	102 aa	Predicted RBP	4.22	□□□□□ -1.73
SEC39	YLR440C	MTR2	P34232	184 aa	Known RBP	4.22	□□□□□ -1.73
SEC39	YLR440C	CSH1	P38287	376 aa		4.22	□□□□□ -1.73
SEC39	YLR440C	MPM1	P40364	252 aa		4.22	□□□□□ -1.73
SEC39	YLR440C	TDA4	P47153	279 aa		4.22	□□□□□ -1.73
SEC39	YLR440C	ROT1	Q03691	256 aa		4.22	□□□□□ -1.73
SEC39	YLR440C	YMR252C	Q04814	134 aa		4.22	□□□□□ -1.73
SEC39	YLR440C	FAB1	P34756	2278 aa		4.22	□□□□□ -1.73
SEC39	YLR440C	CCH1	P50077	2039 aa		4.22	□□□□□ -1.73
SEC39	YLR440C	KRE1	P17260	313 aa		4.21	□□□□□ -1.74
SEC39	YLR440C	MID2	P36027	376 aa		4.21	□□□□□ -1.74
SEC39	YLR440C	YRA2	P36036	203 aa	Known RBP RIP-Chip data	4.21	□□□□□ -1.74	not detected
SEC39	YLR440C	RPL32	P38061	130 aa	Known RBP	4.21	□□□□□ -1.74
SEC39	YLR440C	SHE1	P38200	338 aa		4.21	□□□□□ -1.74
SEC39	YLR440C	SWS2	P53937	143 aa		4.21	□□□□□ -1.74
SEC39	YLR440C	GPI19	Q04082	140 aa		4.21	□□□□□ -1.74
SEC39	YLR440C	GAT3	Q07928	141 aa		4.21	□□□□□ -1.74
SEC39	YLR440C	YOL160W	Q08321	113 aa		4.21	□□□□□ -1.74
SEC39	YLR440C	HEM4	P06174	275 aa		4.21	□□□□□ -1.74
SEC39	YLR440C	MRS4	P23500	304 aa		4.21	□□□□□ -1.74
SEC39	YLR440C	YCR050C	P25630	102 aa		4.21	□□□□□ -1.74
SEC39	YLR440C	GAT4	P40569	121 aa		4.21	□□□□□ -1.74
SEC39	YLR440C	PHS1	P40857	217 aa		4.21	□□□□□ -1.74
SEC39	YLR440C	YPS5	P53057	165 aa		4.21	□□□□□ -1.74
SEC39	YLR440C	MPC1	P53157	130 aa	Known RBP	4.21	□□□□□ -1.74
SEC39	YLR440C	SPG4	Q04438	115 aa		4.21	□□□□□ -1.74
SEC39	YLR440C	NCE102	Q12207	173 aa	RIP-Chip data	4.21	□□□□□ -1.74	not detected
SEC39	YLR440C	CNE1	P27825	502 aa		4.2	□□□□□ -1.74
SEC39	YLR440C	PEX17	P40155	199 aa		4.2	□□□□□ -1.74
SEC39	YLR440C	EMC5	P40540	141 aa		4.2	□□□□□ -1.74
SEC39	YLR440C	YGL034C	P53186	121 aa		4.2	□□□□□ -1.74
SEC39	YLR440C	HTL1	Q9URQ5	78 aa		4.2	□□□□□ -1.74
SEC39	YLR440C	RPS31	P05759	152 aa	Known RBP	4.19	□□□□□ -1.74
SEC39	YLR440C	RPA12	P32529	125 aa	Known RBP	4.19	□□□□□ -1.74
SEC39	YLR440C	YHL018W	P38744	120 aa	Predicted RBP	4.19	□□□□□ -1.74
SEC39	YLR440C	NSA2	P40078	261 aa	Known RBP	4.19	□□□□□ -1.74
SEC39	YLR440C	DSK2	P48510	373 aa		4.19	□□□□□ -1.74
SEC39	YLR440C	UBC13	P52490	153 aa		4.19	□□□□□ -1.74
SEC39	YLR440C	SDS23	P53172	527 aa		4.19	□□□□□ -1.74
SEC39	YLR440C	YNL234W	P53857	426 aa		4.19	□□□□□ -1.74
SEC39	YLR440C	YDL057W	Q07379	328 aa		4.19	□□□□□ -1.74
SEC39	YLR440C	YOL162W	P0CF19	215 aa		4.19	□□□□□ -1.74
SEC39	YLR440C	SMP1	P38128	452 aa		4.19	□□□□□ -1.74
SEC39	YLR440C	ASP1	P38986	381 aa	Predicted RBP	4.19	□□□□□ -1.74
SEC39	YLR440C	KEG1	P43614	200 aa		4.19	□□□□□ -1.74
SEC39	YLR440C	TDA7	P53882	636 aa	Predicted RBP	4.19	□□□□□ -1.74
SEC39	YLR440C	RPL22B	P56628	122 aa	Known RBP	4.19	□□□□□ -1.74
SEC39	YLR440C	YLR281C	Q05863	155 aa		4.19	□□□□□ -1.74
SEC39	YLR440C	YIL102C-A	Q2V2P5	75 aa		4.19	□□□□□ -1.74
SEC39	YLR440C	YLR363W-A	Q3E747	85 aa		4.19	□□□□□ -1.74
SEC39	YLR440C	ATG40	Q99325	256 aa		4.19	□□□□□ -1.74
SEC39	YLR440C	Q0255	P03881	472 aa		4.18	□□□□□ -1.74
SEC39	YLR440C	NRG2	P38082	220 aa		4.18	□□□□□ -1.74
SEC39	YLR440C	CTF8	P38877	133 aa		4.18	□□□□□ -1.74
SEC39	YLR440C	YIL054W	P40524	105 aa		4.18	□□□□□ -1.74
SEC39	YLR440C	MTR3	P48240	250 aa	Predicted RBP	4.18	□□□□□ -1.74
SEC39	YLR440C	YGL088W	P53151	121 aa		4.18	□□□□□ -1.74
SEC39	YLR440C	YLR012C	Q07927	99 aa		4.18	□□□□□ -1.74
SEC39	YLR440C	IRC25	Q07951	179 aa		4.18	□□□□□ -1.74
SEC39	YLR440C	POC4	Q12245	148 aa	Predicted RBP	4.18	□□□□□ -1.74
SEC39	YLR440C	DFM1	Q12743	341 aa	Known RBP	4.18	□□□□□ -1.74
SEC39	YLR440C	UBC4	P15731	148 aa		4.18	□□□□□ -1.74
SEC39	YLR440C	YCR099C	P25657	155 aa		4.18	□□□□□ -1.74
SEC39	YLR440C	AHT1	P29589	182 aa		4.18	□□□□□ -1.74
SEC39	YLR440C	DSS4	P32601	143 aa		4.18	□□□□□ -1.74
SEC39	YLR440C	EST3	Q03096	181 aa		4.18	□□□□□ -1.74
SEC39	YLR440C	YMR187C	Q03236	431 aa		4.18	□□□□□ -1.74
SEC39	YLR440C	DAD1	Q12248	94 aa		4.18	□□□□□ -1.74
SEC39	YLR440C	HTA2	P04912	132 aa		4.17	□□□□□ -1.74
SEC39	YLR440C	RPS14A	P06367	137 aa	Known RBP	4.17	□□□□□ -1.74
SEC39	YLR440C	RPS14B	P39516	138 aa	Known RBP	4.17	□□□□□ -1.74
SEC39	YLR440C	SMD1	Q02260	146 aa	Predicted RBP	4.17	□□□□□ -1.74
SEC39	YLR440C	YAL064W-B	O13512	126 aa		4.16	□□□□□ -1.74
SEC39	YLR440C	GPI18	P38211	433 aa		4.16	□□□□□ -1.74
SEC39	YLR440C	ECM34	P38728	170 aa		4.16	□□□□□ -1.74
SEC39	YLR440C	YML079W	Q03629	201 aa		4.16	□□□□□ -1.74
SEC39	YLR440C	MSA1	Q08471	629 aa		4.16	□□□□□ -1.74
SEC39	YLR440C	YDR119W-A	Q2V2P9	66 aa		4.16	□□□□□ -1.74
SEC39	YLR440C	YHR214C-E	Q8TGK0	99 aa		4.16	□□□□□ -1.74
SEC39	YLR440C	SVP26	P38869	228 aa		4.16	□□□□□ -1.74
SEC39	YLR440C	YNL195C	P40168	261 aa		4.16	□□□□□ -1.74
SEC39	YLR440C	YJL218W	P40892	196 aa	Known RBP	4.16	□□□□□ -1.74
SEC39	YLR440C	SUN4	P53616	420 aa		4.16	□□□□□ -1.74
SEC39	YLR440C	Q0010	Q9ZZX9	128 aa		4.16	□□□□□ -1.74
SEC39	YLR440C	LAA1	P39526	2014 aa		4.16	□□□□□ -1.74
SEC39	YLR440C	TOR1	P35169	2470 aa		4.15	□□□□□ -1.74
SEC39	YLR440C	RPL40A	P0CH08	128 aa	Known RBP	4.15	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 51.9 ms