RNA–Protein interactions for RNA: YGR135W

PRE9, Transcript of Alpha 3 subunit of the 20S proteasome, yeastyeast

Gene PRE9, Length 777 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRE9YGR135W YGL230CP53074 147 aa3.52□□□□□ -1.85
PRE9YGR135W CGI121Q03705 181 aaKnown RBP3.52□□□□□ -1.85
PRE9YGR135W CNL1Q06333 122 aa3.52□□□□□ -1.85
PRE9YGR135W UTP23Q12339 254 aaKnown RBP3.52□□□□□ -1.85
PRE9YGR135W RPS22BQ3E7Y3 130 aaKnown RBP3.52□□□□□ -1.85
PRE9YGR135W SOD1P00445 154 aaKnown RBP3.51□□□□□ -1.85
PRE9YGR135W YSF3P0C074 85 aaPredicted RBP3.51□□□□□ -1.85
PRE9YGR135W SPS100P13130 326 aa3.51□□□□□ -1.85
PRE9YGR135W RPL30P14120 105 aaKnown RBP3.51□□□□□ -1.85
PRE9YGR135W SEC11P15367 167 aa3.51□□□□□ -1.85
PRE9YGR135W HSP150P32478 413 aa3.51□□□□□ -1.85
PRE9YGR135W PAM17P36147 197 aa3.51□□□□□ -1.85
PRE9YGR135W SWD3P38123 315 aa3.51□□□□□ -1.85
PRE9YGR135W BAT1P38891 393 aaKnown RBP3.51□□□□□ -1.85
PRE9YGR135W YFL067WP43537 175 aa3.51□□□□□ -1.85
PRE9YGR135W COQ5P49017 307 aa3.51□□□□□ -1.85
PRE9YGR135W MST27P53176 234 aa3.51□□□□□ -1.85
PRE9YGR135W YLR460CP54007 376 aa3.51□□□□□ -1.85
PRE9YGR135W YDR102CQ03864 110 aa3.51□□□□□ -1.85
PRE9YGR135W GIM5Q04493 163 aa3.51□□□□□ -1.85
PRE9YGR135W LOA1Q06508 300 aa3.51□□□□□ -1.85
PRE9YGR135W YOL118CQ08259 102 aa3.51□□□□□ -1.85
PRE9YGR135W YOR186WQ08560 144 aa3.51□□□□□ -1.85
PRE9YGR135W YPL257WQ08974 193 aa3.51□□□□□ -1.85
PRE9YGR135W AYT1Q12226 474 aa3.51□□□□□ -1.85
PRE9YGR135W SMT3Q12306 101 aaKnown RBP3.51□□□□□ -1.85
PRE9YGR135W ATG40Q99325 256 aa3.51□□□□□ -1.85
PRE9YGR135W YFL068WP0CX99 160 aa3.5□□□□□ -1.85
PRE9YGR135W YLL066W-AP0CY00 160 aa3.5□□□□□ -1.85
PRE9YGR135W YLL067W-AP0CY01 160 aa3.5□□□□□ -1.85
PRE9YGR135W FCY2P17064 533 aa3.5□□□□□ -1.85
PRE9YGR135W INO2P26798 304 aa3.5□□□□□ -1.85
PRE9YGR135W MRP49P32388 137 aa3.5□□□□□ -1.85
PRE9YGR135W RPS27AP35997 82 aaKnown RBP3.5□□□□□ -1.85
PRE9YGR135W MIC12P38341 106 aa3.5□□□□□ -1.85
PRE9YGR135W RPS27BP38711 82 aa3.5□□□□□ -1.85
PRE9YGR135W FYV4P38783 130 aaPredicted RBP3.5□□□□□ -1.85
PRE9YGR135W CCS1P40202 249 aaKnown RBP3.5□□□□□ -1.85
PRE9YGR135W YIL163CP40448 117 aa3.5□□□□□ -1.85
PRE9YGR135W PRM5P40476 318 aa3.5□□□□□ -1.85
PRE9YGR135W MSL1P40567 111 aaPredicted RBP3.5□□□□□ -1.85
PRE9YGR135W HAC1P41546 238 aa3.5□□□□□ -1.85
PRE9YGR135W GEP7P53171 287 aa3.5□□□□□ -1.85
PRE9YGR135W YGR050CP53231 118 aa3.5□□□□□ -1.85
PRE9YGR135W WSC2P53832 503 aa3.5□□□□□ -1.85
PRE9YGR135W SEI1Q06058 285 aa3.5□□□□□ -1.85
PRE9YGR135W ATG39Q06159 398 aa3.5□□□□□ -1.85
PRE9YGR135W RDL2Q08742 149 aaKnown RBP3.5□□□□□ -1.85
PRE9YGR135W FIT3Q08907 204 aa3.5□□□□□ -1.85
PRE9YGR135W YHR214C-EQ8TGK0 99 aa3.5□□□□□ -1.85
PRE9YGR135W SEC4P07560 215 aaKnown RBP3.49□□□□□ -1.85
PRE9YGR135W MSI1P13712 422 aa3.49□□□□□ -1.85
PRE9YGR135W CUP2P15315 225 aa3.49□□□□□ -1.85
PRE9YGR135W ARO2P28777 376 aaKnown RBP3.49□□□□□ -1.85
PRE9YGR135W QRI5P32344 111 aa3.49□□□□□ -1.85
PRE9YGR135W SRX1P36077 127 aa3.49□□□□□ -1.85
PRE9YGR135W YBR090CP38253 122 aa3.49□□□□□ -1.85
PRE9YGR135W DER1P38307 211 aa3.49□□□□□ -1.85
PRE9YGR135W MOB1P40484 314 aa3.49□□□□□ -1.85
PRE9YGR135W RPR2P40571 144 aa3.49□□□□□ -1.85
PRE9YGR135W YGR017WP53210 297 aa3.49□□□□□ -1.85
PRE9YGR135W LPP1Q04396 274 aa3.49□□□□□ -1.85
PRE9YGR135W PRP11Q07350 266 aaPredicted RBP3.49□□□□□ -1.85
PRE9YGR135W YOR292CQ08743 309 aa3.49□□□□□ -1.85
PRE9YGR135W CSM4Q08955 156 aa3.49□□□□□ -1.85
PRE9YGR135W NIP7Q08962 181 aaKnown RBP3.49□□□□□ -1.85
PRE9YGR135W POC4Q12245 148 aaPredicted RBP3.49□□□□□ -1.85
PRE9YGR135W ATO3Q12359 275 aa3.49□□□□□ -1.85
PRE9YGR135W YOR192C-CQ3E736 78 aa3.49□□□□□ -1.85
PRE9YGR135W YAL064W-BO13512 126 aa3.48□□□□□ -1.85
PRE9YGR135W RPL15AP05748 204 aaKnown RBP3.48□□□□□ -1.85
PRE9YGR135W RPL23AP0CX41 137 aaKnown RBP3.48□□□□□ -1.85
PRE9YGR135W RPL23BP0CX42 137 aaKnown RBP3.48□□□□□ -1.85
PRE9YGR135W HMRA1P0CY11 126 aa3.48□□□□□ -1.85
PRE9YGR135W MRS3P10566 314 aa3.48□□□□□ -1.85
PRE9YGR135W NOP1P15646 327 aaKnown RBP3.48□□□□□ -1.85
PRE9YGR135W KTI12P34253 313 aaKnown RBP3.48□□□□□ -1.85
PRE9YGR135W YHL044WP38727 235 aa3.48□□□□□ -1.85
PRE9YGR135W YNL198CP40166 100 aa3.48□□□□□ -1.85
PRE9YGR135W ARP3P47117 449 aaKnown RBP3.48□□□□□ -1.85
PRE9YGR135W DSK2P48510 373 aa3.48□□□□□ -1.85
PRE9YGR135W SSU72P53538 206 aaPredicted RBP3.48□□□□□ -1.85
PRE9YGR135W BOR1P53838 576 aa3.48□□□□□ -1.85
PRE9YGR135W GRH1Q04410 372 aaKnown RBP3.48□□□□□ -1.85
PRE9YGR135W SNA4Q07549 140 aa3.48□□□□□ -1.85
PRE9YGR135W YLR050CQ12155 161 aaKnown RBP3.48□□□□□ -1.85
PRE9YGR135W GEP5Q12393 293 aa3.48□□□□□ -1.85
PRE9YGR135W SLO1Q3E784 85 aa3.48□□□□□ -1.85
PRE9YGR135W BOL1Q3E793 110 aa3.48□□□□□ -1.85
PRE9YGR135W SCS22Q6Q595 175 aa3.48□□□□□ -1.85
PRE9YGR135W TRP1P00912 224 aa3.47□□□□□ -1.85
PRE9YGR135W PAI3P01094 68 aa3.47□□□□□ -1.85
PRE9YGR135W HEM4P06174 275 aa3.47□□□□□ -1.85
PRE9YGR135W RPS14AP06367 137 aaKnown RBP3.47□□□□□ -1.85
PRE9YGR135W ANB1P19211 157 aa3.47□□□□□ -1.85
PRE9YGR135W SPT4P32914 102 aaPredicted RBP3.47□□□□□ -1.85
PRE9YGR135W MCH2P36032 473 aa3.47□□□□□ -1.85
PRE9YGR135W RPS14BP39516 138 aaKnown RBP3.47□□□□□ -1.85
PRE9YGR135W TDA4P47153 279 aa3.47□□□□□ -1.85
PRE9YGR135W UBC13P52490 153 aa3.47□□□□□ -1.85
Retrieved 100 of 5,963 RNA–protein pairs in 41.1 ms