RNA–Protein interactions for RNA: YFL005W

SEC4, Transcript of Rab family GTPase, yeastyeast

Gene SEC4, Length 648 nt, Biotype protein coding, Subcellular localisation Cellular bud, Endoplasmic reticulum, Nucleus, Peroxisome .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SEC4YFL005W ALB1P47019 175 aaPredicted RBP1.59□□□□□ -2.15
SEC4YFL005W SYM1Q06563 197 aa1.59□□□□□ -2.15
SEC4YFL005W FIT2Q08906 153 aa1.59□□□□□ -2.15
SEC4YFL005W SNT2P53127 1403 aa1.58□□□□□ -2.16
SEC4YFL005W HSP12P22943 109 aaKnown RBP1.58□□□□□ -2.16
SEC4YFL005W EMC4P53073 190 aa1.58□□□□□ -2.16
SEC4YFL005W LIP1Q03579 150 aa1.58□□□□□ -2.16
SEC4YFL005W GAL83Q04739 417 aa1.58□□□□□ -2.16
SEC4YFL005W UIP4Q08926 304 aa1.58□□□□□ -2.16
SEC4YFL005W YPL225WQ08971 146 aaKnown RBP1.58□□□□□ -2.16
SEC4YFL005W YLR422WQ06409 1932 aa1.58□□□□□ -2.16
SEC4YFL005W PHO13P19881 312 aa1.57□□□□□ -2.16
SEC4YFL005W AHT1P29589 182 aa1.57□□□□□ -2.16
SEC4YFL005W GSP1P32835 219 aaKnown RBP1.57□□□□□ -2.16
SEC4YFL005W RPB7P34087 171 aa1.57□□□□□ -2.16
SEC4YFL005W RRT1P38192 103 aa1.57□□□□□ -2.16
SEC4YFL005W YNL200CP40165 246 aaKnown RBP1.57□□□□□ -2.16
SEC4YFL005W SAE3P89114 91 aa1.57□□□□□ -2.16
SEC4YFL005W EST3Q03096 181 aa1.57□□□□□ -2.16
SEC4YFL005W RUB1Q03919 77 aa1.57□□□□□ -2.16
SEC4YFL005W YOR289WQ12012 251 aaPredicted RBP1.57□□□□□ -2.16
SEC4YFL005W YOR015WQ12169 119 aa1.57□□□□□ -2.16
SEC4YFL005W FYV7Q12247 151 aa1.57□□□□□ -2.16
SEC4YFL005W YLR118CQ12354 227 aa1.57□□□□□ -2.16
SEC4YFL005W TOP2P06786 1428 aaKnown RBP1.57□□□□□ -2.16
SEC4YFL005W SPP41P38904 1435 aa1.57□□□□□ -2.16
SEC4YFL005W SPA2P23201 1466 aaKnown RBP1.56□□□□□ -2.16
SEC4YFL005W SPT14P32363 452 aa1.56□□□□□ -2.16
SEC4YFL005W ETR1P38071 380 aa1.56□□□□□ -2.16
SEC4YFL005W FYV4P38783 130 aaPredicted RBP1.56□□□□□ -2.16
SEC4YFL005W YEL073CP39974 107 aa1.56□□□□□ -2.16
SEC4YFL005W YEL028WP39989 153 aa1.56□□□□□ -2.16
SEC4YFL005W YER137CP40083 148 aaKnown RBP1.56□□□□□ -2.16
SEC4YFL005W YFL065CP43539 102 aa1.56□□□□□ -2.16
SEC4YFL005W GEP7P53171 287 aa1.56□□□□□ -2.16
SEC4YFL005W YNR064CP53750 290 aa1.56□□□□□ -2.16
SEC4YFL005W ELC1Q03071 99 aa1.56□□□□□ -2.16
SEC4YFL005W TMA23Q03525 211 aa1.56□□□□□ -2.16
SEC4YFL005W AIM36Q03798 255 aa1.56□□□□□ -2.16
SEC4YFL005W YMR252CQ04814 134 aa1.56□□□□□ -2.16
SEC4YFL005W LDB18Q07887 179 aa1.56□□□□□ -2.16
SEC4YFL005W YLR099W-AQ3E798 87 aa1.56□□□□□ -2.16
SEC4YFL005W ANB1P19211 157 aa1.55□□□□□ -2.16
SEC4YFL005W YRA2P36036 203 aaKnown RBP RIP-Chip data1.55□□□□□ -2.16not detected
SEC4YFL005W YHR140WP38842 239 aa1.55□□□□□ -2.16
SEC4YFL005W MOB1P40484 314 aa1.55□□□□□ -2.16
SEC4YFL005W SFT1P43682 97 aa1.55□□□□□ -2.16
SEC4YFL005W LSM8P47093 109 aaKnown RBP1.55□□□□□ -2.16
SEC4YFL005W PAC10P48363 199 aa1.55□□□□□ -2.16
SEC4YFL005W PIR1Q03178 341 aa1.55□□□□□ -2.16
SEC4YFL005W YML079WQ03629 201 aa1.55□□□□□ -2.16
SEC4YFL005W DML1Q03652 475 aa1.55□□□□□ -2.16
SEC4YFL005W YDR102CQ03864 110 aa1.55□□□□□ -2.16
SEC4YFL005W ATG10Q07879 167 aa1.55□□□□□ -2.16
SEC4YFL005W UGX2P32772 223 aa1.54□□□□□ -2.16
SEC4YFL005W SFT2P38166 215 aa1.54□□□□□ -2.16
SEC4YFL005W YPT31P38555 223 aaKnown RBP1.54□□□□□ -2.16
SEC4YFL005W YJL218WP40892 196 aaKnown RBP1.54□□□□□ -2.16
SEC4YFL005W RPS12P48589 143 aaKnown RBP1.54□□□□□ -2.16
SEC4YFL005W UPS3Q04006 179 aa1.54□□□□□ -2.16
SEC4YFL005W HSL1P34244 1518 aa1.54□□□□□ -2.16
SEC4YFL005W TY1B-HO13535 1793 aa1.54□□□□□ -2.16
SEC4YFL005W DUR1,2P32528 1835 aaKnown RBP1.54□□□□□ -2.16
SEC4YFL005W ACC1Q00955 2233 aaKnown RBP1.54□□□□□ -2.16
SEC4YFL005W VAR1P02381 398 aa1.53□□□□□ -2.16
SEC4YFL005W SPS2P08459 502 aa1.53□□□□□ -2.16
SEC4YFL005W YGL041W-AP0C5N3 154 aa1.53□□□□□ -2.16
SEC4YFL005W HYM1P32464 399 aa1.53□□□□□ -2.16
SEC4YFL005W RPL14AP36105 138 aaKnown RBP1.53□□□□□ -2.16
SEC4YFL005W RPL14BP38754 138 aaKnown RBP1.53□□□□□ -2.16
SEC4YFL005W RPB11P38902 120 aa1.53□□□□□ -2.16
SEC4YFL005W TSC11P40061 1430 aa1.53□□□□□ -2.16
SEC4YFL005W PHS1P40857 217 aa1.53□□□□□ -2.16
SEC4YFL005W YHP1Q04116 353 aa1.53□□□□□ -2.16
SEC4YFL005W RAF1Q06891 181 aa1.53□□□□□ -2.16
SEC4YFL005W ZEO1Q08245 113 aa1.53□□□□□ -2.16
SEC4YFL005W YOR381W-AQ3E804 55 aa1.53□□□□□ -2.16
SEC4YFL005W ADE6P38972 1358 aaKnown RBP1.52□□□□□ -2.17
SEC4YFL005W AQY2P0CD90 149 aa1.52□□□□□ -2.17
SEC4YFL005W DDR48P18899 430 aaKnown RBP1.52□□□□□ -2.17
SEC4YFL005W NSE4P43124 402 aa1.52□□□□□ -2.17
SEC4YFL005W DIE2P50076 525 aa1.52□□□□□ -2.17
SEC4YFL005W MET31Q03081 177 aa1.52□□□□□ -2.17
SEC4YFL005W SCS22Q6Q595 175 aa1.52□□□□□ -2.17
SEC4YFL005W RIF1P29539 1916 aa1.52□□□□□ -2.17
SEC4YFL005W MRPL44P19956 98 aa1.51□□□□□ -2.17
SEC4YFL005W MAK31P23059 88 aa1.51□□□□□ -2.17
SEC4YFL005W BUD23P25627 275 aaPredicted RBP1.51□□□□□ -2.17
SEC4YFL005W YEL008WP40001 126 aa1.51□□□□□ -2.17
SEC4YFL005W MPM1P40364 252 aa1.51□□□□□ -2.17
SEC4YFL005W RIM9Q04734 239 aa1.51□□□□□ -2.17
SEC4YFL005W TVP18Q04767 167 aa1.51□□□□□ -2.17
SEC4YFL005W UPS1Q05776 175 aa1.51□□□□□ -2.17
SEC4YFL005W KEI1Q06346 221 aa1.51□□□□□ -2.17
SEC4YFL005W ATG41Q12048 136 aa1.51□□□□□ -2.17
SEC4YFL005W RTR2Q12378 196 aa1.51□□□□□ -2.17
SEC4YFL005W HUT1Q12520 339 aa1.51□□□□□ -2.17
SEC4YFL005W DDP1Q99321 188 aaKnown RBP1.51□□□□□ -2.17
SEC4YFL005W STF2P16965 84 aa1.5□□□□□ -2.17
SEC4YFL005W HYP2P23301 157 aaKnown RBP1.5□□□□□ -2.17
Retrieved 100 of 5,963 RNA–protein pairs in 138 ms