RNA–Protein interactions for RNA: ENST00000595081.5

PNKP-205, Transcript of polynucleotide kinase 3'-phosphatase, human

TSL 2

Gene PNKP, Length 513 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PNKP-205	ENST00000595081	MAFF	Q9ULX9	164 aa		24.44	■■□□□ 1.5
PNKP-205	ENST00000595081	C5orf42	Q9H799	3197 aa		24.44	■■□□□ 1.5
PNKP-205	ENST00000595081	SOAT2	O75908	522 aa		24.43	■■□□□ 1.5
PNKP-205	ENST00000595081	HNRNPA1	P09651	372 aa	Known RBP eCLIP	24.43	■■□□□ 1.5
PNKP-205	ENST00000595081	NDST1	P52848	882 aa		24.43	■■□□□ 1.5
PNKP-205	ENST00000595081	NFE2	Q16621	373 aa	Predicted RBP	24.43	■■□□□ 1.5
PNKP-205	ENST00000595081	FAM171B	Q6P995	826 aa		24.43	■■□□□ 1.5
PNKP-205	ENST00000595081	EHBP1	Q8NDI1	1231 aa		24.43	■■□□□ 1.5
PNKP-205	ENST00000595081	SMG7	Q92540	1137 aa	Known RBP	24.43	■■□□□ 1.5
PNKP-205	ENST00000595081	NT5C1B	Q96P26	610 aa		24.43	■■□□□ 1.5
PNKP-205	ENST00000595081	PRKD2	Q9BZL6	878 aa		24.43	■■□□□ 1.5
PNKP-205	ENST00000595081	NDST4	Q9H3R1	872 aa		24.43	■■□□□ 1.5
PNKP-205	ENST00000595081	YIPF1	Q9Y548	306 aa		24.43	■■□□□ 1.5
PNKP-205	ENST00000595081	PTPN1	P18031	435 aa	Known RBP	24.42	■■□□□ 1.5
PNKP-205	ENST00000595081	HOXA9	P31269	272 aa		24.42	■■□□□ 1.5
PNKP-205	ENST00000595081	INCA1	Q0VD86	236 aa		24.42	■■□□□ 1.5
PNKP-205	ENST00000595081	CUL2	Q13617	745 aa		24.42	■■□□□ 1.5
PNKP-205	ENST00000595081	KRT31	Q15323	416 aa		24.42	■■□□□ 1.5
PNKP-205	ENST00000595081	PUS10	Q3MIT2	529 aa	Known RBP	24.42	■■□□□ 1.5
PNKP-205	ENST00000595081	MDH1B	Q5I0G3	518 aa		24.42	■■□□□ 1.5
PNKP-205	ENST00000595081	MYLPF	Q96A32	169 aa		24.42	■■□□□ 1.5
PNKP-205	ENST00000595081	TWNK	Q96RR1	684 aa		24.42	■■□□□ 1.5
PNKP-205	ENST00000595081	SEPT5	Q99719	369 aa	Predicted RBP	24.42	■■□□□ 1.5
PNKP-205	ENST00000595081	RHOBTB2	Q9BYZ6	727 aa		24.42	■■□□□ 1.5
PNKP-205	ENST00000595081	PIDD1	Q9HB75	910 aa		24.42	■■□□□ 1.5
PNKP-205	ENST00000595081	PCDHB5	Q9Y5E4	795 aa		24.42	■■□□□ 1.5
PNKP-205	ENST00000595081	PES1	O00541	588 aa	Known RBP	24.41	■■□□□ 1.5
PNKP-205	ENST00000595081	PAPLN	O95428	1278 aa		24.41	■■□□□ 1.5
PNKP-205	ENST00000595081	LRG1	P02750	347 aa		24.41	■■□□□ 1.5
PNKP-205	ENST00000595081	ZNF18	P17022	549 aa		24.41	■■□□□ 1.5
PNKP-205	ENST00000595081	TWF1	Q12792	350 aa		24.41	■■□□□ 1.5
PNKP-205	ENST00000595081	SMARCB1	Q12824	385 aa		24.41	■■□□□ 1.5
PNKP-205	ENST00000595081	CBX2	Q14781	532 aa	Predicted RBP	24.41	■■□□□ 1.5
PNKP-205	ENST00000595081	SMAD2	Q15796	467 aa	Known RBP	24.41	■■□□□ 1.5
PNKP-205	ENST00000595081	MGAT5B	Q3V5L5	792 aa		24.41	■■□□□ 1.5
PNKP-205	ENST00000595081	ATAT1	Q5SQI0	421 aa		24.41	■■□□□ 1.5
PNKP-205	ENST00000595081	RTL10	Q7L3V2	364 aa		24.41	■■□□□ 1.5
PNKP-205	ENST00000595081	ACOT1	Q86TX2	421 aa		24.41	■■□□□ 1.5
PNKP-205	ENST00000595081	SPATA2L	Q8IUW3	424 aa	Predicted RBP	24.41	■■□□□ 1.5
PNKP-205	ENST00000595081	ARHGEF19	Q8IW93	802 aa		24.41	■■□□□ 1.5
PNKP-205	ENST00000595081	B3GALNT2	Q8NCR0	500 aa		24.41	■■□□□ 1.5
PNKP-205	ENST00000595081	MYCBPAP	Q8TBZ2	947 aa		24.41	■■□□□ 1.5
PNKP-205	ENST00000595081	SPPL2B	Q8TCT7	592 aa		24.41	■■□□□ 1.5
PNKP-205	ENST00000595081	C2orf15	Q8WU43	125 aa	Known RBP	24.41	■■□□□ 1.5
PNKP-205	ENST00000595081	FAXDC2	Q96IV6	333 aa		24.41	■■□□□ 1.5
PNKP-205	ENST00000595081	CISH	Q9NSE2	258 aa		24.41	■■□□□ 1.5
PNKP-205	ENST00000595081	CILP	O75339	1184 aa		24.4	■■□□□ 1.5
PNKP-205	ENST00000595081	BMP1	P13497	986 aa		24.4	■■□□□ 1.5
PNKP-205	ENST00000595081	CYP27A1	Q02318	531 aa		24.4	■■□□□ 1.5
PNKP-205	ENST00000595081	IQCB1	Q15051	598 aa		24.4	■■□□□ 1.5
PNKP-205	ENST00000595081	GBP6	Q6ZN66	633 aa		24.4	■■□□□ 1.5
PNKP-205	ENST00000595081	UNC93A	Q86WB7	457 aa		24.4	■■□□□ 1.5
PNKP-205	ENST00000595081	PPM1K	Q8N3J5	372 aa		24.4	■■□□□ 1.5
PNKP-205	ENST00000595081	WHAMM	Q8TF30	809 aa		24.4	■■□□□ 1.5
PNKP-205	ENST00000595081	KAT5	Q92993	513 aa		24.4	■■□□□ 1.5
PNKP-205	ENST00000595081	PCED1B	Q96HM7	432 aa		24.4	■■□□□ 1.5
PNKP-205	ENST00000595081	RIPOR3	Q96MK2	946 aa		24.4	■■□□□ 1.5
PNKP-205	ENST00000595081	VPS16	Q9H269	839 aa		24.4	■■□□□ 1.5
PNKP-205	ENST00000595081	POMK	Q9H5K3	350 aa		24.4	■■□□□ 1.5
PNKP-205	ENST00000595081	CBX8	Q9HC52	389 aa		24.4	■■□□□ 1.5
PNKP-205	ENST00000595081	HCFC1R1	Q9NWW0	138 aa		24.4	■■□□□ 1.5
PNKP-205	ENST00000595081	FAM50B	Q9Y247	325 aa		24.4	■■□□□ 1.5
PNKP-205	ENST00000595081	SMTNL1	A8MU46	457 aa		24.39	■■□□□ 1.49
PNKP-205	ENST00000595081	XYLB	O75191	536 aa		24.39	■■□□□ 1.49
PNKP-205	ENST00000595081	HAPLN1	P10915	354 aa	Predicted RBP	24.39	■■□□□ 1.49
PNKP-205	ENST00000595081	ATP1A3	P13637	1013 aa		24.39	■■□□□ 1.49
PNKP-205	ENST00000595081	SLC9A1	P19634	815 aa		24.39	■■□□□ 1.49
PNKP-205	ENST00000595081	CYP2F1	P24903	491 aa		24.39	■■□□□ 1.49
PNKP-205	ENST00000595081	MTHFR	P42898	656 aa		24.39	■■□□□ 1.49
PNKP-205	ENST00000595081	APBA1	Q02410	837 aa		24.39	■■□□□ 1.49
PNKP-205	ENST00000595081	EXOC3L4	Q17RC7	722 aa		24.39	■■□□□ 1.49
PNKP-205	ENST00000595081	TRIM65	Q6PJ69	517 aa		24.39	■■□□□ 1.49
PNKP-205	ENST00000595081	RRAGA	Q7L523	313 aa		24.39	■■□□□ 1.49
PNKP-205	ENST00000595081	TNIP3	Q96KP6	325 aa		24.39	■■□□□ 1.49
PNKP-205	ENST00000595081	ELOVL4	Q9GZR5	314 aa		24.39	■■□□□ 1.49
PNKP-205	ENST00000595081	HSFX1	Q9UBD0	423 aa		24.39	■■□□□ 1.49
PNKP-205	ENST00000595081		A0A0C4DFX4	3053 aa		24.38	■■□□□ 1.49
PNKP-205	ENST00000595081	C2orf16	Q68DN1	1984 aa		24.38	■■□□□ 1.49
PNKP-205	ENST00000595081	GTPBP10	A4D1E9	387 aa	Known RBP	24.38	■■□□□ 1.49
PNKP-205	ENST00000595081	CDK11B	P21127	795 aa	Known RBP	24.38	■■□□□ 1.49
PNKP-205	ENST00000595081	TBXAS1	P24557	533 aa	Predicted RBP	24.38	■■□□□ 1.49
PNKP-205	ENST00000595081	ALDH1A3	P47895	512 aa		24.38	■■□□□ 1.49
PNKP-205	ENST00000595081	TUFM	P49411	452 aa	Known RBP	24.38	■■□□□ 1.49
PNKP-205	ENST00000595081	GPR15	P49685	360 aa		24.38	■■□□□ 1.49
PNKP-205	ENST00000595081	NTHL1	P78549	312 aa		24.38	■■□□□ 1.49
PNKP-205	ENST00000595081	MAPRE1	Q15691	268 aa	Known RBP	24.38	■■□□□ 1.49
PNKP-205	ENST00000595081	ZNF394	Q53GI3	561 aa		24.38	■■□□□ 1.49
PNKP-205	ENST00000595081	PHLDB3	Q6NSJ2	640 aa		24.38	■■□□□ 1.49
PNKP-205	ENST00000595081	CYP26C1	Q6V0L0	522 aa		24.38	■■□□□ 1.49
PNKP-205	ENST00000595081	C4orf50	Q6ZRC1	276 aa		24.38	■■□□□ 1.49
PNKP-205	ENST00000595081	GRASP	Q7Z6J2	395 aa	Predicted RBP	24.38	■■□□□ 1.49
PNKP-205	ENST00000595081	NECTIN4	Q96NY8	510 aa		24.38	■■□□□ 1.49
PNKP-205	ENST00000595081	NT5C1A	Q9BXI3	368 aa		24.38	■■□□□ 1.49
PNKP-205	ENST00000595081	B3GNT5	Q9BYG0	378 aa		24.38	■■□□□ 1.49
PNKP-205	ENST00000595081	ABCB6	Q9NP58	842 aa		24.38	■■□□□ 1.49
PNKP-205	ENST00000595081	CEP72	Q9P209	647 aa		24.38	■■□□□ 1.49
PNKP-205	ENST00000595081	LIMA1	Q9UHB6	759 aa	Known RBP	24.38	■■□□□ 1.49
PNKP-205	ENST00000595081	BECN2	A8MW95	431 aa		24.37	■■□□□ 1.49
PNKP-205	ENST00000595081	CLDN5	O00501	218 aa		24.37	■■□□□ 1.49
PNKP-205	ENST00000595081	POU2F2	P09086	479 aa		24.37	■■□□□ 1.49

Retrieved 100 of 20,778 RNA–protein pairs in 29 ms