RNA–Protein interactions for RNA: ENST00000553619.1

VTI1B-202, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-202ENST00000553619 FDXACB1Q9BRP7 624 aaPredicted RBP5.44□□□□□ -1.54
VTI1B-202ENST00000553619 TUBGCP2Q9BSJ2 902 aa5.44□□□□□ -1.54
VTI1B-202ENST00000553619 DUSP23Q9BVJ7 150 aa5.44□□□□□ -1.54
VTI1B-202ENST00000553619 NUP58Q9BVL2 599 aa5.44□□□□□ -1.54
VTI1B-202ENST00000553619 CELF4Q9BZC1 486 aaKnown RBP5.44□□□□□ -1.54
VTI1B-202ENST00000553619 FZD8Q9H461 694 aa5.44□□□□□ -1.54
VTI1B-202ENST00000553619 PRDM10Q9NQV6 1147 aa5.44□□□□□ -1.54
VTI1B-202ENST00000553619 AGPAT3Q9NRZ7 376 aa5.44□□□□□ -1.54
VTI1B-202ENST00000553619 MBNL3Q9NUK0 354 aaKnown RBP5.44□□□□□ -1.54
VTI1B-202ENST00000553619 DMAC2Q9NW81 257 aa5.44□□□□□ -1.54
VTI1B-202ENST00000553619 IFNKQ9P0W0 207 aa5.44□□□□□ -1.54
VTI1B-202ENST00000553619 IMPACTQ9P2X3 320 aa5.44□□□□□ -1.54
VTI1B-202ENST00000553619 ARMCX3Q9UH62 379 aaPredicted RBP5.44□□□□□ -1.54
VTI1B-202ENST00000553619 OGDHLQ9ULD0 1010 aa5.44□□□□□ -1.54
VTI1B-202ENST00000553619 UTP18Q9Y5J1 556 aaKnown RBP eCLIP5.44□□□□□ -1.54
VTI1B-202ENST00000553619 STYXL1Q9Y6J8 313 aa5.44□□□□□ -1.54
VTI1B-202ENST00000553619 SQORQ9Y6N5 450 aa5.44□□□□□ -1.54
VTI1B-202ENST00000553619 SCN10AQ9Y5Y9 1956 aa5.44□□□□□ -1.54
VTI1B-202ENST00000553619 GOLGB1Q14789 3259 aaKnown RBP5.43□□□□□ -1.54
VTI1B-202ENST00000553619 A0A1W2PQC6 194 aa5.43□□□□□ -1.54
VTI1B-202ENST00000553619 MYADML2A6NDP7 307 aa5.43□□□□□ -1.54
VTI1B-202ENST00000553619 ARVCFO00192 962 aa5.43□□□□□ -1.54
VTI1B-202ENST00000553619 P4HA2O15460 535 aa5.43□□□□□ -1.54
VTI1B-202ENST00000553619 EXTL3O43909 919 aa5.43□□□□□ -1.54
VTI1B-202ENST00000553619 N4BP1O75113 896 aaKnown RBP5.43□□□□□ -1.54
VTI1B-202ENST00000553619 TOM1L1O75674 476 aa5.43□□□□□ -1.54
VTI1B-202ENST00000553619 PARNO95453 639 aaKnown RBP5.43□□□□□ -1.54
VTI1B-202ENST00000553619 VTNP04004 478 aa5.43□□□□□ -1.54
VTI1B-202ENST00000553619 RNASE1P07998 156 aaKnown RBP5.43□□□□□ -1.54
VTI1B-202ENST00000553619 ZSCAN20P17040 1043 aaPredicted RBP5.43□□□□□ -1.54
VTI1B-202ENST00000553619 PTGS1P23219 599 aa5.43□□□□□ -1.54
VTI1B-202ENST00000553619 EIF4BP23588 611 aaKnown RBP5.43□□□□□ -1.54
VTI1B-202ENST00000553619 HOXC8P31273 242 aa5.43□□□□□ -1.54
VTI1B-202ENST00000553619 GTF2H1P32780 548 aa5.43□□□□□ -1.54
VTI1B-202ENST00000553619 HOXD13P35453 343 aa5.43□□□□□ -1.54
VTI1B-202ENST00000553619 CYP2J2P51589 502 aa5.43□□□□□ -1.54
VTI1B-202ENST00000553619 AP3M2P53677 418 aa5.43□□□□□ -1.54
VTI1B-202ENST00000553619 PMS1P54277 932 aaKnown RBP5.43□□□□□ -1.54
VTI1B-202ENST00000553619 OXCT1P55809 520 aa5.43□□□□□ -1.54
VTI1B-202ENST00000553619 GSDMDP57764 484 aa5.43□□□□□ -1.54
VTI1B-202ENST00000553619 UBXN1Q04323 297 aa5.43□□□□□ -1.54
VTI1B-202ENST00000553619 BFSP2Q13515 415 aa5.43□□□□□ -1.54
VTI1B-202ENST00000553619 TRIM14Q14142 442 aa5.43□□□□□ -1.54
VTI1B-202ENST00000553619 NR1I3Q14994 352 aa5.43□□□□□ -1.54
VTI1B-202ENST00000553619 KRT31Q15323 416 aa5.43□□□□□ -1.54
VTI1B-202ENST00000553619 VWA3BQ502W6 1294 aa5.43□□□□□ -1.54
VTI1B-202ENST00000553619 ATF7IP2Q5U623 682 aa5.43□□□□□ -1.54
VTI1B-202ENST00000553619 TCERG1LQ5VWI1 586 aa5.43□□□□□ -1.54
VTI1B-202ENST00000553619 LLGL2Q6P1M3 1020 aa5.43□□□□□ -1.54
VTI1B-202ENST00000553619 TSHZ1Q6ZSZ6 1077 aa5.43□□□□□ -1.54
VTI1B-202ENST00000553619 CATSPER4Q7RTX7 472 aa5.43□□□□□ -1.54
VTI1B-202ENST00000553619 PPFIBP1Q86W92 1011 aa5.43□□□□□ -1.54
VTI1B-202ENST00000553619 FMNL3Q8IVF7 1028 aa5.43□□□□□ -1.54
VTI1B-202ENST00000553619 CD302Q8IX05 232 aa5.43□□□□□ -1.54
VTI1B-202ENST00000553619 FAM186BQ8IYM0 893 aa5.43□□□□□ -1.54
VTI1B-202ENST00000553619 SLC43A3Q8NBI5 491 aa5.43□□□□□ -1.54
VTI1B-202ENST00000553619 KCT2Q8NC54 265 aa5.43□□□□□ -1.54
VTI1B-202ENST00000553619 ZNF397Q8NF99 534 aaPredicted RBP5.43□□□□□ -1.54
VTI1B-202ENST00000553619 GPBAR1Q8TDU6 330 aa5.43□□□□□ -1.54
VTI1B-202ENST00000553619 DNAJB3Q8WWF6 145 aa5.43□□□□□ -1.54
VTI1B-202ENST00000553619 ELMO3Q96BJ8 720 aa5.43□□□□□ -1.54
VTI1B-202ENST00000553619 TRIM44Q96DX7 344 aaPredicted RBP5.43□□□□□ -1.54
VTI1B-202ENST00000553619 FAM81BQ96LP2 452 aa5.43□□□□□ -1.54
VTI1B-202ENST00000553619 FRMD6Q96NE9 622 aa5.43□□□□□ -1.54
VTI1B-202ENST00000553619 DEFB118Q96PH6 123 aa5.43□□□□□ -1.54
VTI1B-202ENST00000553619 MED15Q96RN5 788 aa5.43□□□□□ -1.54
VTI1B-202ENST00000553619 FNBP1Q96RU3 617 aa5.43□□□□□ -1.54
VTI1B-202ENST00000553619 TSPAN18Q96SJ8 248 aa5.43□□□□□ -1.54
VTI1B-202ENST00000553619 XPO4Q9C0E2 1151 aaKnown RBP5.43□□□□□ -1.54
VTI1B-202ENST00000553619 FAM49AQ9H0Q0 323 aaPredicted RBP5.43□□□□□ -1.54
VTI1B-202ENST00000553619 VPS16Q9H269 839 aa5.43□□□□□ -1.54
VTI1B-202ENST00000553619 NDST4Q9H3R1 872 aa5.43□□□□□ -1.54
VTI1B-202ENST00000553619 PCIF1Q9H4Z3 704 aa5.43□□□□□ -1.54
VTI1B-202ENST00000553619 RC3H2Q9HBD1 1191 aaKnown RBP5.43□□□□□ -1.54
VTI1B-202ENST00000553619 IFT122Q9HBG6 1241 aa5.43□□□□□ -1.54
VTI1B-202ENST00000553619 CHST12Q9NRB3 414 aa5.43□□□□□ -1.54
VTI1B-202ENST00000553619 HSPBP1Q9NZL4 362 aa5.43□□□□□ -1.54
VTI1B-202ENST00000553619 FAM8A1Q9UBU6 413 aa5.43□□□□□ -1.54
VTI1B-202ENST00000553619 AGO2Q9UKV8 859 aaKnown RBP5.43□□□□□ -1.54
VTI1B-202ENST00000553619 PLAGL2Q9UPG8 496 aa5.43□□□□□ -1.54
VTI1B-202ENST00000553619 TNFSF13BQ9Y275 285 aa5.43□□□□□ -1.54
VTI1B-202ENST00000553619 DAAM1Q9Y4D1 1078 aa5.43□□□□□ -1.54
VTI1B-202ENST00000553619 TRPV2Q9Y5S1 764 aa5.43□□□□□ -1.54
VTI1B-202ENST00000553619 A0A1B0GUA9 196 aa5.42□□□□□ -1.54
VTI1B-202ENST00000553619 A0A1W2PQ45 241 aaPredicted RBP5.42□□□□□ -1.54
VTI1B-202ENST00000553619 A0A1W2PQY0 241 aa5.42□□□□□ -1.54
VTI1B-202ENST00000553619 GTPBP10A4D1E9 387 aaKnown RBP5.42□□□□□ -1.54
VTI1B-202ENST00000553619 DCDC2CA8MYV0 355 aa5.42□□□□□ -1.54
VTI1B-202ENST00000553619 ANKRD63C9JTQ0 380 aa5.42□□□□□ -1.54
VTI1B-202ENST00000553619 OGTO15294 1046 aa5.42□□□□□ -1.54
VTI1B-202ENST00000553619 PMM2O15305 246 aa5.42□□□□□ -1.54
VTI1B-202ENST00000553619 GPR32O75388 356 aa5.42□□□□□ -1.54
VTI1B-202ENST00000553619 RPS6KA5O75582 802 aa5.42□□□□□ -1.54
VTI1B-202ENST00000553619 IL18RAPO95256 599 aa5.42□□□□□ -1.54
VTI1B-202ENST00000553619 AFPP02771 609 aaKnown RBP5.42□□□□□ -1.54
VTI1B-202ENST00000553619 CEACAM5P06731 702 aa5.42□□□□□ -1.54
VTI1B-202ENST00000553619 MCF2P10911 925 aa5.42□□□□□ -1.54
VTI1B-202ENST00000553619 ATP1A3P13637 1013 aa5.42□□□□□ -1.54
VTI1B-202ENST00000553619 DARSP14868 501 aaKnown RBP5.42□□□□□ -1.54
VTI1B-202ENST00000553619 DEKP35659 375 aaKnown RBP5.42□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms