RNA–Protein interactions for RNA: ENST00000535717.1

CHD4-203, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 2

Gene CHD4, Length 660 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-203ENST00000535717 EXOC3L4Q17RC7 722 aa12.87□□□□□ -0.35
CHD4-203ENST00000535717 UVSSAQ2YD98 709 aa12.87□□□□□ -0.35
CHD4-203ENST00000535717 RARS2Q5T160 578 aaKnown RBP12.87□□□□□ -0.35
CHD4-203ENST00000535717 LIN9Q5TKA1 542 aa12.87□□□□□ -0.35
CHD4-203ENST00000535717 PHLDB3Q6NSJ2 640 aa12.87□□□□□ -0.35
CHD4-203ENST00000535717 TRIM65Q6PJ69 517 aa12.87□□□□□ -0.35
CHD4-203ENST00000535717 ELMSAN1Q6PJG2 1045 aa12.87□□□□□ -0.35
CHD4-203ENST00000535717 TMC5Q6UXY8 1006 aa12.87□□□□□ -0.35
CHD4-203ENST00000535717 RRAGAQ7L523 313 aa12.87□□□□□ -0.35
CHD4-203ENST00000535717 UNC93AQ86WB7 457 aa12.87□□□□□ -0.35
CHD4-203ENST00000535717 PPM1KQ8N3J5 372 aa12.87□□□□□ -0.35
CHD4-203ENST00000535717 TTC9BQ8N6N2 239 aa12.87□□□□□ -0.35
CHD4-203ENST00000535717 ANKRD20A12PQ8NF67 263 aa12.87□□□□□ -0.35
CHD4-203ENST00000535717 WHAMMQ8TF30 809 aa12.87□□□□□ -0.35
CHD4-203ENST00000535717 KAT5Q92993 513 aa12.87□□□□□ -0.35
CHD4-203ENST00000535717 TWNKQ96RR1 684 aa12.87□□□□□ -0.35
CHD4-203ENST00000535717 SFXN1Q9H9B4 322 aa12.87□□□□□ -0.35
CHD4-203ENST00000535717 CYP4F11Q9HBI6 524 aa12.87□□□□□ -0.35
CHD4-203ENST00000535717 CISHQ9NSE2 258 aa12.87□□□□□ -0.35
CHD4-203ENST00000535717 CD207Q9UJ71 328 aa12.87□□□□□ -0.35
CHD4-203ENST00000535717 SLC27A5Q9Y2P5 690 aa12.87□□□□□ -0.35
CHD4-203ENST00000535717 CCDC195A0A1B0GUA6 201 aa12.86□□□□□ -0.35
CHD4-203ENST00000535717 SPDYE4A6NLX3 237 aa12.86□□□□□ -0.35
CHD4-203ENST00000535717 CILPO75339 1184 aa12.86□□□□□ -0.35
CHD4-203ENST00000535717 PAPLNO95428 1278 aa12.86□□□□□ -0.35
CHD4-203ENST00000535717 TPM2P07951 284 aa12.86□□□□□ -0.35
CHD4-203ENST00000535717 TBXAS1P24557 533 aaPredicted RBP12.86□□□□□ -0.35
CHD4-203ENST00000535717 KCNMA1Q12791 1236 aa12.86□□□□□ -0.35
CHD4-203ENST00000535717 SMARCB1Q12824 385 aa12.86□□□□□ -0.35
CHD4-203ENST00000535717 NFE2Q16621 373 aaPredicted RBP12.86□□□□□ -0.35
CHD4-203ENST00000535717 LEXMQ3ZCV2 418 aa12.86□□□□□ -0.35
CHD4-203ENST00000535717 MDH1BQ5I0G3 518 aa12.86□□□□□ -0.35
CHD4-203ENST00000535717 PPM1LQ5SGD2 360 aa12.86□□□□□ -0.35
CHD4-203ENST00000535717 DPY19L2P1Q6NXN4 242 aa12.86□□□□□ -0.35
CHD4-203ENST00000535717 GJB7Q6PEY0 223 aa12.86□□□□□ -0.35
CHD4-203ENST00000535717 CCDC149Q6ZUS6 474 aa12.86□□□□□ -0.35
CHD4-203ENST00000535717 RTL10Q7L3V2 364 aa12.86□□□□□ -0.35
CHD4-203ENST00000535717 ACOT1Q86TX2 421 aa12.86□□□□□ -0.35
CHD4-203ENST00000535717 CRYBG2Q8N1P7 616 aa12.86□□□□□ -0.35
CHD4-203ENST00000535717 TTC39CQ8N584 583 aa12.86□□□□□ -0.35
CHD4-203ENST00000535717 UBR7Q8N806 425 aa12.86□□□□□ -0.35
CHD4-203ENST00000535717 B3GALNT2Q8NCR0 500 aa12.86□□□□□ -0.35
CHD4-203ENST00000535717 SMRP1Q8NCR6 262 aa12.86□□□□□ -0.35
CHD4-203ENST00000535717 CMASQ8NFW8 434 aaPredicted RBP12.86□□□□□ -0.35
CHD4-203ENST00000535717 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.86□□□□□ -0.35
CHD4-203ENST00000535717 MYCBPAPQ8TBZ2 947 aa12.86□□□□□ -0.35
CHD4-203ENST00000535717 C2orf15Q8WU43 125 aaKnown RBP12.86□□□□□ -0.35
CHD4-203ENST00000535717 ZNF707Q96C28 371 aaPredicted RBP12.86□□□□□ -0.35
CHD4-203ENST00000535717 KREMEN1Q96MU8 473 aa12.86□□□□□ -0.35
CHD4-203ENST00000535717 ELOVL4Q9GZR5 314 aa12.86□□□□□ -0.35
CHD4-203ENST00000535717 SIX2Q9NPC8 291 aa12.86□□□□□ -0.35
CHD4-203ENST00000535717 ZDHHC7Q9NXF8 308 aa12.86□□□□□ -0.35
CHD4-203ENST00000535717 ABI2Q9NYB9 513 aaPredicted RBP12.86□□□□□ -0.35
CHD4-203ENST00000535717 THEGQ9P2T0 379 aa12.86□□□□□ -0.35
CHD4-203ENST00000535717 CDH22Q9UJ99 828 aa12.86□□□□□ -0.35
CHD4-203ENST00000535717 PCDHB5Q9Y5E4 795 aa12.86□□□□□ -0.35
CHD4-203ENST00000535717 INSL5Q9Y5Q6 135 aa12.86□□□□□ -0.35
CHD4-203ENST00000535717 GRXCR2A6NFK2 248 aa12.85□□□□□ -0.35
CHD4-203ENST00000535717 LGALS16A8MUM7 142 aa12.85□□□□□ -0.35
CHD4-203ENST00000535717 GOLGA6L19H0YKK7 550 aa12.85□□□□□ -0.35
CHD4-203ENST00000535717 CCL16O15467 120 aa12.85□□□□□ -0.35
CHD4-203ENST00000535717 SOAT2O75908 522 aa12.85□□□□□ -0.35
CHD4-203ENST00000535717 HNRNPA1P09651 372 aaKnown RBP eCLIP12.85□□□□□ -0.35
CHD4-203ENST00000535717 ACO1P21399 889 aaKnown RBP12.85□□□□□ -0.35
CHD4-203ENST00000535717 CYP2F1P24903 491 aa12.85□□□□□ -0.35
CHD4-203ENST00000535717 HOXA9P31269 272 aa12.85□□□□□ -0.35
CHD4-203ENST00000535717 GCNT1Q02742 428 aa12.85□□□□□ -0.35
CHD4-203ENST00000535717 MAPRE1Q15691 268 aaKnown RBP12.85□□□□□ -0.35
CHD4-203ENST00000535717 GPR149Q86SP6 731 aa12.85□□□□□ -0.35
CHD4-203ENST00000535717 SPATA2LQ8IUW3 424 aaPredicted RBP12.85□□□□□ -0.35
CHD4-203ENST00000535717 SPPL2BQ8TCT7 592 aa12.85□□□□□ -0.35
CHD4-203ENST00000535717 MYLPFQ96A32 169 aa12.85□□□□□ -0.35
CHD4-203ENST00000535717 PCED1BQ96HM7 432 aa12.85□□□□□ -0.35
CHD4-203ENST00000535717 TNIP3Q96KP6 325 aa12.85□□□□□ -0.35
CHD4-203ENST00000535717 NT5C1AQ9BXI3 368 aa12.85□□□□□ -0.35
CHD4-203ENST00000535717 B3GNT5Q9BYG0 378 aa12.85□□□□□ -0.35
CHD4-203ENST00000535717 RHOBTB2Q9BYZ6 727 aa12.85□□□□□ -0.35
CHD4-203ENST00000535717 PRKD2Q9BZL6 878 aa12.85□□□□□ -0.35
CHD4-203ENST00000535717 ADAM7Q9H2U9 754 aa12.85□□□□□ -0.35
CHD4-203ENST00000535717 FAM124BQ9H5Z6 455 aaPredicted RBP12.85□□□□□ -0.35
CHD4-203ENST00000535717 ABCB6Q9NP58 842 aa12.85□□□□□ -0.35
CHD4-203ENST00000535717 UBE2TQ9NPD8 197 aaPredicted RBP12.85□□□□□ -0.35
CHD4-203ENST00000535717 HSFX1Q9UBD0 423 aa12.85□□□□□ -0.35
CHD4-203ENST00000535717 APEX2Q9UBZ4 518 aa12.85□□□□□ -0.35
CHD4-203ENST00000535717 YIPF1Q9Y548 306 aa12.85□□□□□ -0.35
CHD4-203ENST00000535717 A0A0C4DFX4 3053 aa12.85□□□□□ -0.35
CHD4-203ENST00000535717 MBTPS2O43462 519 aa12.84□□□□□ -0.35
CHD4-203ENST00000535717 HAPLN1P10915 354 aaPredicted RBP12.84□□□□□ -0.35
CHD4-203ENST00000535717 KLK7P49862 253 aa12.84□□□□□ -0.35
CHD4-203ENST00000535717 RAD23BP54727 409 aa12.84□□□□□ -0.35
CHD4-203ENST00000535717 YWHAEP62258 255 aaKnown RBP12.84□□□□□ -0.35
CHD4-203ENST00000535717 TPM4P67936 248 aa12.84□□□□□ -0.35
CHD4-203ENST00000535717 CYP27A1Q02318 531 aa12.84□□□□□ -0.35
CHD4-203ENST00000535717 ITIH3Q06033 890 aa12.84□□□□□ -0.35
CHD4-203ENST00000535717 TWF1Q12792 350 aa12.84□□□□□ -0.35
CHD4-203ENST00000535717 SMAD4Q13485 552 aaKnown RBP12.84□□□□□ -0.35
CHD4-203ENST00000535717 CFAP221Q4G0U5 840 aa12.84□□□□□ -0.35
CHD4-203ENST00000535717 ZNF394Q53GI3 561 aa12.84□□□□□ -0.35
CHD4-203ENST00000535717 FKBP15Q5T1M5 1219 aa12.84□□□□□ -0.35
CHD4-203ENST00000535717 CES5AQ6NT32 575 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms