RNA–Protein interactions for RNA: ENST00000526000.5

CD44-221, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 722 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-221ENST00000526000 C1QTNF9BB2RNN3 333 aa7.09□□□□□ -1.27
CD44-221ENST00000526000 PATE3B3GLJ2 98 aa7.09□□□□□ -1.27
CD44-221ENST00000526000 LAD1O00515 517 aa7.09□□□□□ -1.27
CD44-221ENST00000526000 TRDMT1O14717 391 aaKnown RBP7.09□□□□□ -1.27
CD44-221ENST00000526000 TM4SF5O14894 197 aa7.09□□□□□ -1.27
CD44-221ENST00000526000 FAM189A1O60320 539 aa7.09□□□□□ -1.27
CD44-221ENST00000526000 ATG13O75143 517 aa7.09□□□□□ -1.27
CD44-221ENST00000526000 ATP2C2O75185 946 aa7.09□□□□□ -1.27
CD44-221ENST00000526000 EPN2O95208 641 aa7.09□□□□□ -1.27
CD44-221ENST00000526000 FGF19O95750 216 aa7.09□□□□□ -1.27
CD44-221ENST00000526000 CAVIN2O95810 425 aa7.09□□□□□ -1.27
CD44-221ENST00000526000 C1QTNF9P0C862 333 aa7.09□□□□□ -1.27
CD44-221ENST00000526000 HMGA1P17096 107 aaKnown RBP7.09□□□□□ -1.27
CD44-221ENST00000526000 PLCG1P19174 1290 aa7.09□□□□□ -1.27
CD44-221ENST00000526000 PMLP29590 882 aa7.09□□□□□ -1.27
CD44-221ENST00000526000 GJA4P35212 333 aa7.09□□□□□ -1.27
CD44-221ENST00000526000 MPLP40238 635 aa7.09□□□□□ -1.27
CD44-221ENST00000526000 PRPHP41219 470 aa7.09□□□□□ -1.27
CD44-221ENST00000526000 RAP1GAPP47736 663 aa7.09□□□□□ -1.27
CD44-221ENST00000526000 TAF6P49848 677 aa7.09□□□□□ -1.27
CD44-221ENST00000526000 WNT7BP56706 349 aa7.09□□□□□ -1.27
CD44-221ENST00000526000 ATP2C1P98194 919 aaPredicted RBP7.09□□□□□ -1.27
CD44-221ENST00000526000 KCNA1Q09470 495 aa7.09□□□□□ -1.27
CD44-221ENST00000526000 FOXC1Q12948 553 aa7.09□□□□□ -1.27
CD44-221ENST00000526000 PTPAQ15257 358 aa7.09□□□□□ -1.27
CD44-221ENST00000526000 KYAT1Q16773 422 aa7.09□□□□□ -1.27
CD44-221ENST00000526000 C2orf27AQ580R0 203 aa7.09□□□□□ -1.27
CD44-221ENST00000526000 HYIQ5T013 277 aa7.09□□□□□ -1.27
CD44-221ENST00000526000 LMBRD2Q68DH5 695 aaPredicted RBP7.09□□□□□ -1.27
CD44-221ENST00000526000 USP49Q70CQ1 688 aa7.09□□□□□ -1.27
CD44-221ENST00000526000 OSTM1Q86WC4 334 aa7.09□□□□□ -1.27
CD44-221ENST00000526000 EFCAB13Q8IY85 973 aa7.09□□□□□ -1.27
CD44-221ENST00000526000 DCP1BQ8IZD4 617 aaKnown RBP7.09□□□□□ -1.27
CD44-221ENST00000526000 SYNPOQ8N3V7 929 aa7.09□□□□□ -1.27
CD44-221ENST00000526000 DEFB119Q8N690 84 aa7.09□□□□□ -1.27
CD44-221ENST00000526000 CSGALNACT2Q8N6G5 542 aa7.09□□□□□ -1.27
CD44-221ENST00000526000 ARL14EPQ8N8R7 260 aaPredicted RBP7.09□□□□□ -1.27
CD44-221ENST00000526000 RLN3Q8WXF3 142 aa7.09□□□□□ -1.27
CD44-221ENST00000526000 EZH1Q92800 747 aaPredicted RBP7.09□□□□□ -1.27
CD44-221ENST00000526000 SAAL1Q96ER3 474 aa7.09□□□□□ -1.27
CD44-221ENST00000526000 CALML4Q96GE6 196 aa7.09□□□□□ -1.27
CD44-221ENST00000526000 MSANTD3Q96H12 275 aa7.09□□□□□ -1.27
CD44-221ENST00000526000 FAM213AQ9BRX8 229 aa7.09□□□□□ -1.27
CD44-221ENST00000526000 DUSP15Q9H1R2 295 aaPredicted RBP7.09□□□□□ -1.27
CD44-221ENST00000526000 PCIF1Q9H4Z3 704 aa7.09□□□□□ -1.27
CD44-221ENST00000526000 ECT2Q9H8V3 914 aa7.09□□□□□ -1.27
CD44-221ENST00000526000 PARVGQ9HBI0 331 aa7.09□□□□□ -1.27
CD44-221ENST00000526000 ZDHHC4Q9NPG8 344 aa7.09□□□□□ -1.27
CD44-221ENST00000526000 BLOC1S4Q9NUP1 217 aa7.09□□□□□ -1.27
CD44-221ENST00000526000 DUS2Q9NX74 493 aaKnown RBP7.09□□□□□ -1.27
CD44-221ENST00000526000 OBP2AQ9NY56 170 aa7.09□□□□□ -1.27
CD44-221ENST00000526000 AGO2Q9UKV8 859 aaKnown RBP7.09□□□□□ -1.27
CD44-221ENST00000526000 AGAP1Q9UPQ3 857 aa7.09□□□□□ -1.27
CD44-221ENST00000526000 PCDHB5Q9Y5E4 795 aa7.09□□□□□ -1.27
CD44-221ENST00000526000 DMXL1Q9Y485 3027 aa7.09□□□□□ -1.27
CD44-221ENST00000526000 TICRRQ7Z2Z1 1910 aa7.09□□□□□ -1.27
CD44-221ENST00000526000 MAP1BP46821 2468 aaKnown RBP7.08□□□□□ -1.28
CD44-221ENST00000526000 C2orf78A6NCI8 922 aa7.08□□□□□ -1.28
CD44-221ENST00000526000 H0YCG3 227 aa7.08□□□□□ -1.28
CD44-221ENST00000526000 TBCAO75347 108 aaKnown RBP7.08□□□□□ -1.28
CD44-221ENST00000526000 PAPSS2O95340 614 aaPredicted RBP7.08□□□□□ -1.28
CD44-221ENST00000526000 ABL1P00519 1130 aa7.08□□□□□ -1.28
CD44-221ENST00000526000 CYP11A1P05108 521 aa7.08□□□□□ -1.28
CD44-221ENST00000526000 ADRB2P07550 413 aa7.08□□□□□ -1.28
CD44-221ENST00000526000 KRT19P08727 400 aa7.08□□□□□ -1.28
CD44-221ENST00000526000 PDGFRBP09619 1106 aa7.08□□□□□ -1.28
CD44-221ENST00000526000 CSH1P0DML2 217 aa7.08□□□□□ -1.28
CD44-221ENST00000526000 CSH2P0DML3 217 aa7.08□□□□□ -1.28
CD44-221ENST00000526000 PDIA4P13667 645 aaKnown RBP7.08□□□□□ -1.28
CD44-221ENST00000526000 BCKDHBP21953 392 aa7.08□□□□□ -1.28
CD44-221ENST00000526000 GJB2P29033 226 aa7.08□□□□□ -1.28
CD44-221ENST00000526000 POLR2BP30876 1174 aaKnown RBP7.08□□□□□ -1.28
CD44-221ENST00000526000 HOXA6P31267 233 aa7.08□□□□□ -1.28
CD44-221ENST00000526000 SLC6A11P48066 632 aa7.08□□□□□ -1.28
CD44-221ENST00000526000 IFNAR2P48551 515 aa7.08□□□□□ -1.28
CD44-221ENST00000526000 DHPSP49366 369 aaPredicted RBP7.08□□□□□ -1.28
CD44-221ENST00000526000 NOVA1P51513 510 aaKnown RBP7.08□□□□□ -1.28
CD44-221ENST00000526000 TSPY1Q01534 308 aa7.08□□□□□ -1.28
CD44-221ENST00000526000 BECN1Q14457 450 aa7.08□□□□□ -1.28
CD44-221ENST00000526000 DMC1Q14565 340 aa7.08□□□□□ -1.28
CD44-221ENST00000526000 RILPL1Q5EBL4 403 aa7.08□□□□□ -1.28
CD44-221ENST00000526000 EMC10Q5UCC4 262 aa7.08□□□□□ -1.28
CD44-221ENST00000526000 KIAA1211LQ6NV74 962 aa7.08□□□□□ -1.28
CD44-221ENST00000526000 C1orf228Q6PIY5 440 aa7.08□□□□□ -1.28
CD44-221ENST00000526000 CRELD2Q6UXH1 353 aaPredicted RBP7.08□□□□□ -1.28
CD44-221ENST00000526000 ARMCX6Q7L4S7 300 aa7.08□□□□□ -1.28
CD44-221ENST00000526000 MON1AQ86VX9 555 aa7.08□□□□□ -1.28
CD44-221ENST00000526000 SFR1Q86XK3 245 aa7.08□□□□□ -1.28
CD44-221ENST00000526000 SFTPA1Q8IWL2 248 aa7.08□□□□□ -1.28
CD44-221ENST00000526000 CD302Q8IX05 232 aa7.08□□□□□ -1.28
CD44-221ENST00000526000 PDCL2Q8N4E4 241 aa7.08□□□□□ -1.28
CD44-221ENST00000526000 FRMD1Q8N878 549 aa7.08□□□□□ -1.28
CD44-221ENST00000526000 SPPL2BQ8TCT7 592 aa7.08□□□□□ -1.28
CD44-221ENST00000526000 SH3RF2Q8TEC5 729 aa7.08□□□□□ -1.28
CD44-221ENST00000526000 POMGNT1Q8WZA1 660 aa7.08□□□□□ -1.28
CD44-221ENST00000526000 PIGKQ92643 395 aa7.08□□□□□ -1.28
CD44-221ENST00000526000 RAD54LQ92698 747 aa7.08□□□□□ -1.28
CD44-221ENST00000526000 CD101Q93033 1021 aa7.08□□□□□ -1.28
CD44-221ENST00000526000 EDEM2Q9BV94 578 aa7.08□□□□□ -1.28
CD44-221ENST00000526000 LSM14BQ9BX40 385 aaKnown RBP7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms