RNA–Protein interactions for RNA: ENST00000505804.1

TOPBP1-204, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 2

Gene TOPBP1, Length 472 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-204ENST00000505804 ZNF280BQ86YH2 543 aa4.96□□□□□ -1.62
TOPBP1-204ENST00000505804 VRK3Q8IV63 474 aa4.96□□□□□ -1.62
TOPBP1-204ENST00000505804 Q8N1X5 172 aa4.96□□□□□ -1.62
TOPBP1-204ENST00000505804 FUBP1Q96AE4 644 aaKnown RBP4.96□□□□□ -1.62
TOPBP1-204ENST00000505804 MOGAT1Q96PD6 335 aa4.96□□□□□ -1.62
TOPBP1-204ENST00000505804 STRBPQ96SI9 672 aaKnown RBP4.96□□□□□ -1.62
TOPBP1-204ENST00000505804 STK31Q9BXU1 1019 aa4.96□□□□□ -1.62
TOPBP1-204ENST00000505804 A1CFQ9NQ94 594 aaKnown RBP4.96□□□□□ -1.62
TOPBP1-204ENST00000505804 INTS13Q9NVM9 706 aa4.96□□□□□ -1.62
TOPBP1-204ENST00000505804 TBCCD1Q9NVR7 557 aa4.96□□□□□ -1.62
TOPBP1-204ENST00000505804 TESQ9UGI8 421 aaKnown RBP4.96□□□□□ -1.62
TOPBP1-204ENST00000505804 PHTF1Q9UMS5 762 aa4.96□□□□□ -1.62
TOPBP1-204ENST00000505804 HS3ST3A1Q9Y663 406 aa4.96□□□□□ -1.62
TOPBP1-204ENST00000505804 A0A0B4J269 797 aa4.95□□□□□ -1.62
TOPBP1-204ENST00000505804 hCG_1984214I3L0E3 225 aa4.95□□□□□ -1.62
TOPBP1-204ENST00000505804 TRIAP1O43715 76 aa4.95□□□□□ -1.62
TOPBP1-204ENST00000505804 SOAT2O75908 522 aa4.95□□□□□ -1.62
TOPBP1-204ENST00000505804 ATXN1LP0C7T5 689 aaKnown RBP4.95□□□□□ -1.62
TOPBP1-204ENST00000505804 CYP2C9P11712 490 aa4.95□□□□□ -1.62
TOPBP1-204ENST00000505804 XRCC6P12956 609 aaKnown RBP eCLIP4.95□□□□□ -1.62
TOPBP1-204ENST00000505804 PXNP49023 591 aaPredicted RBP4.95□□□□□ -1.62
TOPBP1-204ENST00000505804 CASP5P51878 434 aa4.95□□□□□ -1.62
TOPBP1-204ENST00000505804 HNRNPMP52272 730 aaKnown RBP eCLIP4.95□□□□□ -1.62
TOPBP1-204ENST00000505804 ZNF543Q08ER8 600 aa4.95□□□□□ -1.62
TOPBP1-204ENST00000505804 IFIT5Q13325 482 aaKnown RBP4.95□□□□□ -1.62
TOPBP1-204ENST00000505804 TUBB3Q13509 450 aa4.95□□□□□ -1.62
TOPBP1-204ENST00000505804 SF3B3Q15393 1217 aaKnown RBP4.95□□□□□ -1.62
TOPBP1-204ENST00000505804 LONRF1Q17RB8 773 aa4.95□□□□□ -1.62
TOPBP1-204ENST00000505804 PLA1AQ53H76 456 aa4.95□□□□□ -1.62
TOPBP1-204ENST00000505804 RBM20Q5T481 1227 aaKnown RBP4.95□□□□□ -1.62
TOPBP1-204ENST00000505804 VPS53Q5VIR6 699 aa4.95□□□□□ -1.62
TOPBP1-204ENST00000505804 TSHZ1Q6ZSZ6 1077 aa4.95□□□□□ -1.62
TOPBP1-204ENST00000505804 LCORLQ8N3X6 602 aa4.95□□□□□ -1.62
TOPBP1-204ENST00000505804 SVIPQ8NHG7 77 aa4.95□□□□□ -1.62
TOPBP1-204ENST00000505804 MSLNLQ96KJ4 702 aa4.95□□□□□ -1.62
TOPBP1-204ENST00000505804 Q96MF0 132 aa4.95□□□□□ -1.62
TOPBP1-204ENST00000505804 MESP1Q9BRJ9 268 aa4.95□□□□□ -1.62
TOPBP1-204ENST00000505804 UNKQ9C0B0 810 aaKnown RBP4.95□□□□□ -1.62
TOPBP1-204ENST00000505804 AMBRA1Q9C0C7 1298 aa4.95□□□□□ -1.62
TOPBP1-204ENST00000505804 CASS4Q9NQ75 786 aa4.95□□□□□ -1.62
TOPBP1-204ENST00000505804 MRPS17Q9Y2R5 130 aaKnown RBP4.95□□□□□ -1.62
TOPBP1-204ENST00000505804 COL4A3Q01955 1670 aa4.95□□□□□ -1.62
TOPBP1-204ENST00000505804 POM121BA6NF01 834 aa4.94□□□□□ -1.62
TOPBP1-204ENST00000505804 RASSF9O75901 435 aa4.94□□□□□ -1.62
TOPBP1-204ENST00000505804 IL18RAPO95256 599 aa4.94□□□□□ -1.62
TOPBP1-204ENST00000505804 C6P13671 934 aa4.94□□□□□ -1.62
TOPBP1-204ENST00000505804 PPP3CBP16298 524 aa4.94□□□□□ -1.62
TOPBP1-204ENST00000505804 ALDH5A1P51649 535 aaPredicted RBP4.94□□□□□ -1.62
TOPBP1-204ENST00000505804 AK2P54819 239 aa4.94□□□□□ -1.62
TOPBP1-204ENST00000505804 WNT3P56703 355 aa4.94□□□□□ -1.62
TOPBP1-204ENST00000505804 DAG1Q14118 895 aa4.94□□□□□ -1.62
TOPBP1-204ENST00000505804 UBE4AQ14139 1066 aa4.94□□□□□ -1.62
TOPBP1-204ENST00000505804 ZIK1Q3SY52 487 aaPredicted RBP4.94□□□□□ -1.62
TOPBP1-204ENST00000505804 ABHD17BQ5VST6 288 aa4.94□□□□□ -1.62
TOPBP1-204ENST00000505804 KLHDC7AQ5VTJ3 777 aa4.94□□□□□ -1.62
TOPBP1-204ENST00000505804 DBX2Q6ZNG2 339 aa4.94□□□□□ -1.62
TOPBP1-204ENST00000505804 UNC13DQ70J99 1090 aa4.94□□□□□ -1.62
TOPBP1-204ENST00000505804 LIX1LQ8IVB5 337 aa4.94□□□□□ -1.62
TOPBP1-204ENST00000505804 SSH3Q8TE77 659 aa4.94□□□□□ -1.62
TOPBP1-204ENST00000505804 LPIN2Q92539 896 aa4.94□□□□□ -1.62
TOPBP1-204ENST00000505804 SPSB4Q96A44 273 aa4.94□□□□□ -1.62
TOPBP1-204ENST00000505804 TPSD1Q9BZJ3 242 aa4.94□□□□□ -1.62
TOPBP1-204ENST00000505804 CHST8Q9H2A9 424 aa4.94□□□□□ -1.62
TOPBP1-204ENST00000505804 PNPLA8Q9NP80 782 aa4.94□□□□□ -1.62
TOPBP1-204ENST00000505804 ZSCAN32Q9NX65 697 aa4.94□□□□□ -1.62
TOPBP1-204ENST00000505804 FNIP2Q9P278 1114 aa4.94□□□□□ -1.62
TOPBP1-204ENST00000505804 ITGB1BP2Q9UKP3 347 aa4.94□□□□□ -1.62
TOPBP1-204ENST00000505804 SHOC2Q9UQ13 582 aa4.94□□□□□ -1.62
TOPBP1-204ENST00000505804 UTP18Q9Y5J1 556 aaKnown RBP eCLIP4.94□□□□□ -1.62
TOPBP1-204ENST00000505804 MBD3L4A6NDZ8 208 aaPredicted RBP4.93□□□□□ -1.62
TOPBP1-204ENST00000505804 MBD3L3A6NE82 208 aaPredicted RBP4.93□□□□□ -1.62
TOPBP1-204ENST00000505804 FOXN3O00409 490 aaPredicted RBP4.93□□□□□ -1.62
TOPBP1-204ENST00000505804 ADH4P08319 380 aa4.93□□□□□ -1.62
TOPBP1-204ENST00000505804 PARP1P09874 1014 aaKnown RBP4.93□□□□□ -1.62
TOPBP1-204ENST00000505804 TACR2P21452 398 aa4.93□□□□□ -1.62
TOPBP1-204ENST00000505804 CD6P30203 668 aa4.93□□□□□ -1.62
TOPBP1-204ENST00000505804 MCM7P33993 719 aa4.93□□□□□ -1.62
TOPBP1-204ENST00000505804 STT3AP46977 705 aa4.93□□□□□ -1.62
TOPBP1-204ENST00000505804 LOXL3P58215 753 aa4.93□□□□□ -1.62
TOPBP1-204ENST00000505804 HTRA4P83105 476 aaPredicted RBP4.93□□□□□ -1.62
TOPBP1-204ENST00000505804 KRT17Q04695 432 aa4.93□□□□□ -1.62
TOPBP1-204ENST00000505804 HDAC1Q13547 482 aaPredicted RBP4.93□□□□□ -1.62
TOPBP1-204ENST00000505804 LCE1DQ5T752 114 aa4.93□□□□□ -1.62
TOPBP1-204ENST00000505804 ZNF627Q7L945 461 aa4.93□□□□□ -1.62
TOPBP1-204ENST00000505804 SRLQ86TD4 932 aa4.93□□□□□ -1.62
TOPBP1-204ENST00000505804 GAS2L3Q86XJ1 694 aa4.93□□□□□ -1.62
TOPBP1-204ENST00000505804 LNX2Q8N448 690 aa4.93□□□□□ -1.62
TOPBP1-204ENST00000505804 NEU4Q8WWR8 484 aaPredicted RBP4.93□□□□□ -1.62
TOPBP1-204ENST00000505804 LARP4BQ92615 738 aaKnown RBP4.93□□□□□ -1.62
TOPBP1-204ENST00000505804 TNIP3Q96KP6 325 aa4.93□□□□□ -1.62
TOPBP1-204ENST00000505804 SNX22Q96L94 193 aa4.93□□□□□ -1.62
TOPBP1-204ENST00000505804 OSBPL9Q96SU4 736 aa4.93□□□□□ -1.62
TOPBP1-204ENST00000505804 NELL2Q99435 816 aa4.93□□□□□ -1.62
TOPBP1-204ENST00000505804 PTDSS2Q9BVG9 487 aa4.93□□□□□ -1.62
TOPBP1-204ENST00000505804 BRIP1Q9BX63 1249 aa4.93□□□□□ -1.62
TOPBP1-204ENST00000505804 TBC1D23Q9NUY8 699 aa4.93□□□□□ -1.62
TOPBP1-204ENST00000505804 HDAC9Q9UKV0 1011 aa4.93□□□□□ -1.62
TOPBP1-204ENST00000505804 PAXBP1Q9Y5B6 917 aa4.93□□□□□ -1.62
TOPBP1-204ENST00000505804 FZD7O75084 574 aa4.92□□□□□ -1.62
TOPBP1-204ENST00000505804 MT-ND5P03915 603 aa4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms