RNA–Protein interactions for RNA: ENST00000487880.2

USP48-209, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 524 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-209ENST00000487880 RPS16P62249 146 aaKnown RBP6.56□□□□□ -1.36
USP48-209ENST00000487880 HTRA4P83105 476 aaPredicted RBP6.56□□□□□ -1.36
USP48-209ENST00000487880 FPGSQ05932 587 aa6.56□□□□□ -1.36
USP48-209ENST00000487880 PICALMQ13492 652 aa6.56□□□□□ -1.36
USP48-209ENST00000487880 ABHD17BQ5VST6 288 aa6.56□□□□□ -1.36
USP48-209ENST00000487880 DCAF12L1Q5VU92 463 aa6.56□□□□□ -1.36
USP48-209ENST00000487880 IL31Q6EBC2 164 aa6.56□□□□□ -1.36
USP48-209ENST00000487880 LNX2Q8N448 690 aa6.56□□□□□ -1.36
USP48-209ENST00000487880 FAM109AQ8N4B1 249 aa6.56□□□□□ -1.36
USP48-209ENST00000487880 ZC3H10Q96K80 434 aaKnown RBP6.56□□□□□ -1.36
USP48-209ENST00000487880 TTYH3Q9C0H2 523 aa6.56□□□□□ -1.36
USP48-209ENST00000487880 PYCARD-AS1I3L0S3 204 aa6.55□□□□□ -1.36
USP48-209ENST00000487880 SRGNP10124 158 aa6.55□□□□□ -1.36
USP48-209ENST00000487880 XRCC6P12956 609 aaKnown RBP eCLIP6.55□□□□□ -1.36
USP48-209ENST00000487880 IL1R1P14778 569 aa6.55□□□□□ -1.36
USP48-209ENST00000487880 ITGALP20701 1170 aa6.55□□□□□ -1.36
USP48-209ENST00000487880 KLRC1P26715 233 aa6.55□□□□□ -1.36
USP48-209ENST00000487880 PRIM2P49643 509 aa6.55□□□□□ -1.36
USP48-209ENST00000487880 NEK3P51956 506 aa6.55□□□□□ -1.36
USP48-209ENST00000487880 ZNF543Q08ER8 600 aa6.55□□□□□ -1.36
USP48-209ENST00000487880 PREPLQ4J6C6 727 aaPredicted RBP6.55□□□□□ -1.36
USP48-209ENST00000487880 DBX2Q6ZNG2 339 aa6.55□□□□□ -1.36
USP48-209ENST00000487880 SSH3Q8TE77 659 aa6.55□□□□□ -1.36
USP48-209ENST00000487880 SLC39A13Q96H72 371 aa6.55□□□□□ -1.36
USP48-209ENST00000487880 WDR11Q9BZH6 1224 aa6.55□□□□□ -1.36
USP48-209ENST00000487880 SLC52A1Q9NWF4 448 aa6.55□□□□□ -1.36
USP48-209ENST00000487880 PHTF1Q9UMS5 762 aa6.55□□□□□ -1.36
USP48-209ENST00000487880 CORO2BQ9UQ03 480 aa6.55□□□□□ -1.36
USP48-209ENST00000487880 A0A0B4J269 797 aa6.54□□□□□ -1.36
USP48-209ENST00000487880 PROM1O43490 865 aa6.54□□□□□ -1.36
USP48-209ENST00000487880 C6P13671 934 aa6.54□□□□□ -1.36
USP48-209ENST00000487880 TSHRP16473 764 aa6.54□□□□□ -1.36
USP48-209ENST00000487880 ZKSCAN1P17029 563 aaPredicted RBP6.54□□□□□ -1.36
USP48-209ENST00000487880 ALDH5A1P51649 535 aaPredicted RBP6.54□□□□□ -1.36
USP48-209ENST00000487880 LILRA4P59901 499 aa6.54□□□□□ -1.36
USP48-209ENST00000487880 BLOC1S1P78537 153 aa6.54□□□□□ -1.36
USP48-209ENST00000487880 IFIT5Q13325 482 aaKnown RBP6.54□□□□□ -1.36
USP48-209ENST00000487880 TUBB3Q13509 450 aa6.54□□□□□ -1.36
USP48-209ENST00000487880 DAG1Q14118 895 aa6.54□□□□□ -1.36
USP48-209ENST00000487880 UBE4AQ14139 1066 aa6.54□□□□□ -1.36
USP48-209ENST00000487880 PTPAQ15257 358 aa6.54□□□□□ -1.36
USP48-209ENST00000487880 TMEM108Q6UXF1 575 aa6.54□□□□□ -1.36
USP48-209ENST00000487880 Q6ZPA2 131 aa6.54□□□□□ -1.36
USP48-209ENST00000487880 MS4A7Q9GZW8 240 aaPredicted RBP6.54□□□□□ -1.36
USP48-209ENST00000487880 TBCCD1Q9NVR7 557 aa6.54□□□□□ -1.36
USP48-209ENST00000487880 SYBUQ9NX95 663 aa6.54□□□□□ -1.36
USP48-209ENST00000487880 SHOC2Q9UQ13 582 aa6.54□□□□□ -1.36
USP48-209ENST00000487880 SNX13Q9Y5W8 968 aa6.54□□□□□ -1.36
USP48-209ENST00000487880 GRID2IPA4D2P6 1211 aa6.53□□□□□ -1.36
USP48-209ENST00000487880 KPNA5O15131 536 aa6.53□□□□□ -1.36
USP48-209ENST00000487880 IL18RAPO95256 599 aa6.53□□□□□ -1.36
USP48-209ENST00000487880 MYL3P08590 195 aa6.53□□□□□ -1.36
USP48-209ENST00000487880 ITGAMP11215 1152 aa6.53□□□□□ -1.36
USP48-209ENST00000487880 TGM1P22735 817 aa6.53□□□□□ -1.36
USP48-209ENST00000487880 PPIFP30405 207 aaKnown RBP6.53□□□□□ -1.36
USP48-209ENST00000487880 MCM7P33993 719 aa6.53□□□□□ -1.36
USP48-209ENST00000487880 PXNP49023 591 aaPredicted RBP6.53□□□□□ -1.36
USP48-209ENST00000487880 ABHD18Q0P651 414 aa6.53□□□□□ -1.36
USP48-209ENST00000487880 RBM20Q5T481 1227 aaKnown RBP6.53□□□□□ -1.36
USP48-209ENST00000487880 MPP5Q8N3R9 675 aa6.53□□□□□ -1.36
USP48-209ENST00000487880 RNF152Q8N8N0 203 aa6.53□□□□□ -1.36
USP48-209ENST00000487880 LARP4BQ92615 738 aaKnown RBP6.53□□□□□ -1.36
USP48-209ENST00000487880 PTCD3Q96EY7 689 aaKnown RBP6.53□□□□□ -1.36
USP48-209ENST00000487880 TBCBQ99426 244 aa6.53□□□□□ -1.36
USP48-209ENST00000487880 PTDSS2Q9BVG9 487 aa6.53□□□□□ -1.36
USP48-209ENST00000487880 COLEC11Q9BWP8 271 aa6.53□□□□□ -1.36
USP48-209ENST00000487880 BRIP1Q9BX63 1249 aa6.53□□□□□ -1.36
USP48-209ENST00000487880 PNPLA8Q9NP80 782 aa6.53□□□□□ -1.36
USP48-209ENST00000487880 XPNPEP3Q9NQH7 507 aa6.53□□□□□ -1.36
USP48-209ENST00000487880 F5H697 171 aa6.52□□□□□ -1.37
USP48-209ENST00000487880 TRIAP1O43715 76 aa6.52□□□□□ -1.37
USP48-209ENST00000487880 FZD7O75084 574 aa6.52□□□□□ -1.37
USP48-209ENST00000487880 ADH4P08319 380 aa6.52□□□□□ -1.37
USP48-209ENST00000487880 CD6P30203 668 aa6.52□□□□□ -1.37
USP48-209ENST00000487880 AK2P54819 239 aa6.52□□□□□ -1.37
USP48-209ENST00000487880 LONRF1Q17RB8 773 aa6.52□□□□□ -1.37
USP48-209ENST00000487880 ZIK1Q3SY52 487 aaPredicted RBP6.52□□□□□ -1.37
USP48-209ENST00000487880 PLA1AQ53H76 456 aa6.52□□□□□ -1.37
USP48-209ENST00000487880 VPS53Q5VIR6 699 aa6.52□□□□□ -1.37
USP48-209ENST00000487880 VWA1Q6PCB0 445 aa6.52□□□□□ -1.37
USP48-209ENST00000487880 LAYNQ6UX15 382 aa6.52□□□□□ -1.37
USP48-209ENST00000487880 Q6YL49 198 aa6.52□□□□□ -1.37
USP48-209ENST00000487880 ULK2Q8IYT8 1036 aa6.52□□□□□ -1.37
USP48-209ENST00000487880 SLC30A5Q8TAD4 765 aa6.52□□□□□ -1.37
USP48-209ENST00000487880 LINC00476Q8WZB0 136 aa6.52□□□□□ -1.37
USP48-209ENST00000487880 SPSB4Q96A44 273 aa6.52□□□□□ -1.37
USP48-209ENST00000487880 NELL2Q99435 816 aa6.52□□□□□ -1.37
USP48-209ENST00000487880 KCTD5Q9NXV2 234 aa6.52□□□□□ -1.37
USP48-209ENST00000487880 COL4A3Q01955 1670 aa6.52□□□□□ -1.37
USP48-209ENST00000487880 MAST3O60307 1309 aa6.51□□□□□ -1.37
USP48-209ENST00000487880 RASA4BC9J798 803 aa6.51□□□□□ -1.37
USP48-209ENST00000487880 RASA4O43374 803 aa6.51□□□□□ -1.37
USP48-209ENST00000487880 TXNP10599 105 aaKnown RBP6.51□□□□□ -1.37
USP48-209ENST00000487880 PPP3CBP16298 524 aa6.51□□□□□ -1.37
USP48-209ENST00000487880 LRPAP1P30533 357 aa6.51□□□□□ -1.37
USP48-209ENST00000487880 HNRNPMP52272 730 aaKnown RBP eCLIP6.51□□□□□ -1.37
USP48-209ENST00000487880 TAP1Q03518 808 aa6.51□□□□□ -1.37
USP48-209ENST00000487880 SF3B3Q15393 1217 aaKnown RBP6.51□□□□□ -1.37
USP48-209ENST00000487880 SYCP2LQ5T4T6 812 aa6.51□□□□□ -1.37
USP48-209ENST00000487880 ZNF627Q7L945 461 aa6.51□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms