RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 CCT5P48643 541 aa22.77■■□□□ 1.24
TRIM54-202ENST00000380075 KCTD19Q17RG1 926 aaPredicted RBP22.77■■□□□ 1.24
TRIM54-202ENST00000380075 ERICH1Q86X53 443 aa22.77■■□□□ 1.24
TRIM54-202ENST00000380075 LINC01465Q8N7H1 131 aa22.77■■□□□ 1.24
TRIM54-202ENST00000380075 NIPA2Q8N8Q9 360 aa22.77■■□□□ 1.24
TRIM54-202ENST00000380075 ABHD8Q96I13 439 aa22.77■■□□□ 1.24
TRIM54-202ENST00000380075 BCO2Q9BYV7 579 aa22.77■■□□□ 1.24
TRIM54-202ENST00000380075 TULP2O00295 520 aa22.76■■□□□ 1.23
TRIM54-202ENST00000380075 RIPK2O43353 540 aa22.76■■□□□ 1.23
TRIM54-202ENST00000380075 GJB1P08034 283 aa22.76■■□□□ 1.23
TRIM54-202ENST00000380075 INSRRP14616 1297 aa22.76■■□□□ 1.23
TRIM54-202ENST00000380075 ATICP31939 592 aa22.76■■□□□ 1.23
TRIM54-202ENST00000380075 MAGOHP61326 146 aaKnown RBP22.76■■□□□ 1.23
TRIM54-202ENST00000380075 SNX1Q13596 522 aa22.76■■□□□ 1.23
TRIM54-202ENST00000380075 SLC29A2Q14542 456 aa22.76■■□□□ 1.23
TRIM54-202ENST00000380075 ZNF667Q5HYK9 610 aa22.76■■□□□ 1.23
TRIM54-202ENST00000380075 SCARA3Q6AZY7 606 aa22.76■■□□□ 1.23
TRIM54-202ENST00000380075 RHBDF2Q6PJF5 856 aa22.76■■□□□ 1.23
TRIM54-202ENST00000380075 B4GALNT4Q76KP1 1039 aa22.76■■□□□ 1.23
TRIM54-202ENST00000380075 TLK2Q86UE8 772 aa22.76■■□□□ 1.23
TRIM54-202ENST00000380075 TNS4Q8IZW8 715 aa22.76■■□□□ 1.23
TRIM54-202ENST00000380075 CCDC89Q8N998 374 aa22.76■■□□□ 1.23
TRIM54-202ENST00000380075 SEMA4AQ9H3S1 761 aa22.76■■□□□ 1.23
TRIM54-202ENST00000380075 ASB7Q9H672 318 aa22.76■■□□□ 1.23
TRIM54-202ENST00000380075 IFT122Q9HBG6 1241 aa22.76■■□□□ 1.23
TRIM54-202ENST00000380075 XPNPEP3Q9NQH7 507 aa22.76■■□□□ 1.23
TRIM54-202ENST00000380075 USTQ9Y2C2 406 aa22.76■■□□□ 1.23
TRIM54-202ENST00000380075 WEE2P0C1S8 567 aa22.76■■□□□ 1.23
TRIM54-202ENST00000380075 ATF2P15336 505 aa22.76■■□□□ 1.23
TRIM54-202ENST00000380075 TMOD1P28289 359 aa22.76■■□□□ 1.23
TRIM54-202ENST00000380075 SSTR3P32745 418 aaPredicted RBP22.76■■□□□ 1.23
TRIM54-202ENST00000380075 PTPN7P35236 360 aa22.76■■□□□ 1.23
TRIM54-202ENST00000380075 PPP1R15BQ5SWA1 713 aa22.76■■□□□ 1.23
TRIM54-202ENST00000380075 DCUN1D2Q6PH85 259 aa22.76■■□□□ 1.23
TRIM54-202ENST00000380075 CCHCR1Q8TD31 782 aa22.76■■□□□ 1.23
TRIM54-202ENST00000380075 HERPUD2Q9BSE4 406 aa22.76■■□□□ 1.23
TRIM54-202ENST00000380075 TRAIPQ9BWF2 469 aa22.76■■□□□ 1.23
TRIM54-202ENST00000380075 ROPN1BQ9BZX4 212 aaPredicted RBP22.76■■□□□ 1.23
TRIM54-202ENST00000380075 FAM124BQ9H5Z6 455 aaPredicted RBP22.76■■□□□ 1.23
TRIM54-202ENST00000380075 MINDY3Q9H8M7 445 aa22.76■■□□□ 1.23
TRIM54-202ENST00000380075 VRTNQ9H8Y1 702 aa22.76■■□□□ 1.23
TRIM54-202ENST00000380075 ROPN1Q9HAT0 212 aaPredicted RBP22.76■■□□□ 1.23
TRIM54-202ENST00000380075 DDX56Q9NY93 547 aaKnown RBP22.76■■□□□ 1.23
TRIM54-202ENST00000380075 SHBGP04278 402 aa22.75■■□□□ 1.23
TRIM54-202ENST00000380075 CXCL8P10145 99 aa22.75■■□□□ 1.23
TRIM54-202ENST00000380075 SSR1P43307 286 aaKnown RBP22.75■■□□□ 1.23
TRIM54-202ENST00000380075 NFX1Q12986 1120 aaKnown RBP22.75■■□□□ 1.23
TRIM54-202ENST00000380075 DRICH1Q6PGQ1 229 aaPredicted RBP22.75■■□□□ 1.23
TRIM54-202ENST00000380075 OR6J1Q8NGC5 347 aa22.75■■□□□ 1.23
TRIM54-202ENST00000380075 ATG4AQ8WYN0 398 aa22.75■■□□□ 1.23
TRIM54-202ENST00000380075 CCDC114Q96M63 670 aa22.75■■□□□ 1.23
TRIM54-202ENST00000380075 SCLT1Q96NL6 688 aa22.75■■□□□ 1.23
TRIM54-202ENST00000380075 TMEM106CQ9BVX2 250 aa22.75■■□□□ 1.23
TRIM54-202ENST00000380075 AGTP01019 485 aa22.74■■□□□ 1.23
TRIM54-202ENST00000380075 MYCNP04198 464 aaPredicted RBP22.74■■□□□ 1.23
TRIM54-202ENST00000380075 IVDP26440 423 aa22.74■■□□□ 1.23
TRIM54-202ENST00000380075 GSCP56915 257 aaPredicted RBP22.74■■□□□ 1.23
TRIM54-202ENST00000380075 OSTNP61366 133 aa22.74■■□□□ 1.23
TRIM54-202ENST00000380075 RPL7AP62424 266 aaKnown RBP22.74■■□□□ 1.23
TRIM54-202ENST00000380075 ZNF394Q53GI3 561 aa22.74■■□□□ 1.23
TRIM54-202ENST00000380075 CEP128Q6ZU80 1094 aa22.74■■□□□ 1.23
TRIM54-202ENST00000380075 CEP120Q8N960 986 aa22.74■■□□□ 1.23
TRIM54-202ENST00000380075 MCEEQ96PE7 176 aa22.74■■□□□ 1.23
TRIM54-202ENST00000380075 CYP3A43Q9HB55 503 aa22.74■■□□□ 1.23
TRIM54-202ENST00000380075 Q9Y3F1 56 aa22.74■■□□□ 1.23
TRIM54-202ENST00000380075 NEU2Q9Y3R4 380 aa22.74■■□□□ 1.23
TRIM54-202ENST00000380075 MYADML2A6NDP7 307 aa22.74■■□□□ 1.23
TRIM54-202ENST00000380075 CAND2O75155 1236 aa22.74■■□□□ 1.23
TRIM54-202ENST00000380075 TJP3O95049 919 aa22.74■■□□□ 1.23
TRIM54-202ENST00000380075 STAG3L1P0CL83 205 aa22.74■■□□□ 1.23
TRIM54-202ENST00000380075 AMHR2Q16671 573 aa22.74■■□□□ 1.23
TRIM54-202ENST00000380075 SCARA5Q6ZMJ2 495 aa22.74■■□□□ 1.23
TRIM54-202ENST00000380075 ZNF365Q70YC5 407 aa22.74■■□□□ 1.23
TRIM54-202ENST00000380075 TFAP2BQ92481 460 aa22.74■■□□□ 1.23
TRIM54-202ENST00000380075 HEMGNQ9BXL5 484 aa22.74■■□□□ 1.23
TRIM54-202ENST00000380075 AP5M1Q9H0R1 490 aa22.74■■□□□ 1.23
TRIM54-202ENST00000380075 WDR35Q9P2L0 1181 aa22.74■■□□□ 1.23
TRIM54-202ENST00000380075 SIX4Q9UIU6 781 aa22.74■■□□□ 1.23
TRIM54-202ENST00000380075 R3HDM2Q9Y2K5 976 aaKnown RBP22.74■■□□□ 1.23
TRIM54-202ENST00000380075 O00370 1275 aa22.73■■□□□ 1.23
TRIM54-202ENST00000380075 ADAMTS4O75173 837 aa22.73■■□□□ 1.23
TRIM54-202ENST00000380075 C6orf222P0C671 652 aaPredicted RBP22.73■■□□□ 1.23
TRIM54-202ENST00000380075 P4HA1P13674 534 aa22.73■■□□□ 1.23
TRIM54-202ENST00000380075 GJA9P57773 515 aa22.73■■□□□ 1.23
TRIM54-202ENST00000380075 LLGL1Q15334 1064 aa22.73■■□□□ 1.23
TRIM54-202ENST00000380075 WDTC1Q8N5D0 677 aa22.73■■□□□ 1.23
TRIM54-202ENST00000380075 CENPTQ96BT3 561 aa22.73■■□□□ 1.23
TRIM54-202ENST00000380075 SLITRK1Q96PX8 696 aa22.73■■□□□ 1.23
TRIM54-202ENST00000380075 FOXP3Q9BZS1 431 aa22.73■■□□□ 1.23
TRIM54-202ENST00000380075 ATXN2Q99700 1313 aaKnown RBP22.73■■□□□ 1.23
TRIM54-202ENST00000380075 TP73O15350 636 aa22.72■■□□□ 1.23
TRIM54-202ENST00000380075 RGS16O15492 202 aaPredicted RBP22.72■■□□□ 1.23
TRIM54-202ENST00000380075 FAM107AO95990 144 aa22.72■■□□□ 1.23
TRIM54-202ENST00000380075 KRT19P08727 400 aa22.72■■□□□ 1.23
TRIM54-202ENST00000380075 IQCF3P0C7M6 154 aa22.72■■□□□ 1.23
TRIM54-202ENST00000380075 GJA8P48165 433 aa22.72■■□□□ 1.23
TRIM54-202ENST00000380075 IGBP1P78318 339 aa22.72■■□□□ 1.23
TRIM54-202ENST00000380075 BEX3Q00994 111 aa22.72■■□□□ 1.23
TRIM54-202ENST00000380075 ZNF252P-AS1Q0IIN9 211 aa22.72■■□□□ 1.23
TRIM54-202ENST00000380075 DAB2IPQ5VWQ8 1189 aa22.72■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms