RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 IPPQ9Y573 584 aa11.83□□□□□ -0.52
PTPN4-201ENST00000263708 MYO5CQ9NQX4 1742 aa11.83□□□□□ -0.52
PTPN4-201ENST00000263708 MGAT4DA6NG13 374 aa11.83□□□□□ -0.52
PTPN4-201ENST00000263708 HLA-DQA2P01906 255 aa11.83□□□□□ -0.52
PTPN4-201ENST00000263708 HNRNPH2P55795 449 aaKnown RBP11.83□□□□□ -0.52
PTPN4-201ENST00000263708 IER5Q5VY09 327 aa11.83□□□□□ -0.52
PTPN4-201ENST00000263708 TDRD10Q5VZ19 366 aaKnown RBP11.83□□□□□ -0.52
PTPN4-201ENST00000263708 ESRP1Q6NXG1 681 aaKnown RBP11.83□□□□□ -0.52
PTPN4-201ENST00000263708 LINC00301Q8NCQ3 95 aa11.83□□□□□ -0.52
PTPN4-201ENST00000263708 TDRD3Q9H7E2 651 aaKnown RBP11.83□□□□□ -0.52
PTPN4-201ENST00000263708 KLF15Q9UIH9 416 aa11.83□□□□□ -0.52
PTPN4-201ENST00000263708 NAGPAQ9UK23 515 aa11.83□□□□□ -0.52
PTPN4-201ENST00000263708 RTN2O75298 545 aa11.83□□□□□ -0.52
PTPN4-201ENST00000263708 NCAM1P13591 858 aa11.83□□□□□ -0.52
PTPN4-201ENST00000263708 CCNIQ14094 377 aa11.83□□□□□ -0.52
PTPN4-201ENST00000263708 SMTNL2Q2TAL5 461 aa11.83□□□□□ -0.52
PTPN4-201ENST00000263708 RSBN1Q5VWQ0 802 aaPredicted RBP11.83□□□□□ -0.52
PTPN4-201ENST00000263708 CACTIN-AS1Q8N1I8 211 aa11.83□□□□□ -0.52
PTPN4-201ENST00000263708 CNGB3Q9NQW8 809 aa11.83□□□□□ -0.52
PTPN4-201ENST00000263708 NDOR1Q9UHB4 597 aa11.83□□□□□ -0.52
PTPN4-201ENST00000263708 MICAL3Q7RTP6 2002 aa11.83□□□□□ -0.52
PTPN4-201ENST00000263708 LGALS16A8MUM7 142 aa11.83□□□□□ -0.52
PTPN4-201ENST00000263708 STAU1O95793 577 aaKnown RBP11.83□□□□□ -0.52
PTPN4-201ENST00000263708 MAGEA10P43363 369 aaPredicted RBP11.83□□□□□ -0.52
PTPN4-201ENST00000263708 SERAC1Q96JX3 654 aa11.83□□□□□ -0.52
PTPN4-201ENST00000263708 MXD3Q9BW11 206 aa11.83□□□□□ -0.52
PTPN4-201ENST00000263708 ARMC7Q9H6L4 198 aa11.83□□□□□ -0.52
PTPN4-201ENST00000263708 RGS18Q9NS28 235 aa11.83□□□□□ -0.52
PTPN4-201ENST00000263708 TMEM260Q9NX78 707 aa11.83□□□□□ -0.52
PTPN4-201ENST00000263708 TRAPPC8Q9Y2L5 1435 aa11.82□□□□□ -0.52
PTPN4-201ENST00000263708 ASS1P00966 412 aaKnown RBP11.82□□□□□ -0.52
PTPN4-201ENST00000263708 ALDH7A1P49419 539 aaKnown RBP11.82□□□□□ -0.52
PTPN4-201ENST00000263708 BLOC1S5Q8TDH9 187 aa11.82□□□□□ -0.52
PTPN4-201ENST00000263708 AIFM3Q96NN9 605 aa11.82□□□□□ -0.52
PTPN4-201ENST00000263708 ROGDIQ9GZN7 287 aa11.82□□□□□ -0.52
PTPN4-201ENST00000263708 PIF1Q9H611 641 aa11.82□□□□□ -0.52
PTPN4-201ENST00000263708 RMND5AQ9H871 391 aa11.82□□□□□ -0.52
PTPN4-201ENST00000263708 KLHL2O95198 593 aa11.82□□□□□ -0.52
PTPN4-201ENST00000263708 IL6P05231 212 aa11.82□□□□□ -0.52
PTPN4-201ENST00000263708 TXNP10599 105 aaKnown RBP11.82□□□□□ -0.52
PTPN4-201ENST00000263708 ITGA4P13612 1032 aa11.82□□□□□ -0.52
PTPN4-201ENST00000263708 ZNF23P17027 643 aa11.82□□□□□ -0.52
PTPN4-201ENST00000263708 ITGA3P26006 1051 aa11.82□□□□□ -0.52
PTPN4-201ENST00000263708 UBAP1Q9NZ09 502 aa11.82□□□□□ -0.52
PTPN4-201ENST00000263708 PSMC3IPQ9P2W1 217 aaPredicted RBP11.82□□□□□ -0.52
PTPN4-201ENST00000263708 DYRK1BQ9Y463 629 aa11.82□□□□□ -0.52
PTPN4-201ENST00000263708 C2orf81A6NN90 581 aa11.82□□□□□ -0.52
PTPN4-201ENST00000263708 KRT6AP02538 564 aa11.82□□□□□ -0.52
PTPN4-201ENST00000263708 KRT6BP04259 564 aa11.82□□□□□ -0.52
PTPN4-201ENST00000263708 ABCB1P08183 1280 aaPredicted RBP11.82□□□□□ -0.52
PTPN4-201ENST00000263708 MMP10P09238 476 aa11.82□□□□□ -0.52
PTPN4-201ENST00000263708 KRT6CP48668 564 aa11.82□□□□□ -0.52
PTPN4-201ENST00000263708 C1DQ13901 141 aaKnown RBP11.82□□□□□ -0.52
PTPN4-201ENST00000263708 STAT4Q14765 748 aa11.82□□□□□ -0.52
PTPN4-201ENST00000263708 PKN2Q16513 984 aaKnown RBP11.82□□□□□ -0.52
PTPN4-201ENST00000263708 PDZK1Q5T2W1 519 aa11.82□□□□□ -0.52
PTPN4-201ENST00000263708 SCFD2Q8WU76 684 aa11.82□□□□□ -0.52
PTPN4-201ENST00000263708 ANAPC2Q9UJX6 822 aa11.82□□□□□ -0.52
PTPN4-201ENST00000263708 DBR1Q9UK59 544 aaKnown RBP11.82□□□□□ -0.52
PTPN4-201ENST00000263708 SOAT2O75908 522 aa11.82□□□□□ -0.52
PTPN4-201ENST00000263708 DHX34Q14147 1143 aaKnown RBP11.82□□□□□ -0.52
PTPN4-201ENST00000263708 TMEM132BQ14DG7 1078 aa11.82□□□□□ -0.52
PTPN4-201ENST00000263708 TMC5Q6UXY8 1006 aa11.82□□□□□ -0.52
PTPN4-201ENST00000263708 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.82□□□□□ -0.52
PTPN4-201ENST00000263708 ASB14A6NK59 587 aa11.82□□□□□ -0.52
PTPN4-201ENST00000263708 NUDT2P50583 147 aa11.82□□□□□ -0.52
PTPN4-201ENST00000263708 KLC1Q07866 573 aa11.82□□□□□ -0.52
PTPN4-201ENST00000263708 NDUFA5Q16718 116 aa11.82□□□□□ -0.52
PTPN4-201ENST00000263708 TRPC4APQ8TEL6 797 aa11.82□□□□□ -0.52
PTPN4-201ENST00000263708 STK33Q9BYT3 514 aa11.82□□□□□ -0.52
PTPN4-201ENST00000263708 PIGUQ9H490 435 aa11.82□□□□□ -0.52
PTPN4-201ENST00000263708 TPST1O60507 370 aa11.82□□□□□ -0.52
PTPN4-201ENST00000263708 LBPP18428 481 aa11.82□□□□□ -0.52
PTPN4-201ENST00000263708 PSMD7P51665 324 aa11.82□□□□□ -0.52
PTPN4-201ENST00000263708 SPP2Q13103 211 aa11.82□□□□□ -0.52
PTPN4-201ENST00000263708 ARMC4Q5T2S8 1044 aa11.82□□□□□ -0.52
PTPN4-201ENST00000263708 ZCCHC8Q6NZY4 707 aaKnown RBP11.82□□□□□ -0.52
PTPN4-201ENST00000263708 PI16Q6UXB8 463 aa11.82□□□□□ -0.52
PTPN4-201ENST00000263708 GPR141Q7Z602 305 aa11.82□□□□□ -0.52
PTPN4-201ENST00000263708 GAS2L3Q86XJ1 694 aa11.82□□□□□ -0.52
PTPN4-201ENST00000263708 C4orf33Q8N1A6 199 aa11.82□□□□□ -0.52
PTPN4-201ENST00000263708 FAM136AQ96C01 138 aa11.82□□□□□ -0.52
PTPN4-201ENST00000263708 DNAJC1Q96KC8 554 aaKnown RBP11.82□□□□□ -0.52
PTPN4-201ENST00000263708 CARD14Q9BXL6 1004 aa11.82□□□□□ -0.52
PTPN4-201ENST00000263708 GON4LQ3T8J9 2241 aa11.82□□□□□ -0.52
PTPN4-201ENST00000263708 SMIM22K7EJ46 135 aa11.82□□□□□ -0.52
PTPN4-201ENST00000263708 ATP1A3P13637 1013 aa11.82□□□□□ -0.52
PTPN4-201ENST00000263708 SCP2P22307 547 aa11.82□□□□□ -0.52
PTPN4-201ENST00000263708 CTNNAL1Q9UBT7 734 aa11.82□□□□□ -0.52
PTPN4-201ENST00000263708 ARL2BPQ9Y2Y0 163 aa11.82□□□□□ -0.52
PTPN4-201ENST00000263708 ATP6V1B2P21281 511 aa11.82□□□□□ -0.52
PTPN4-201ENST00000263708 AP3M2P53677 418 aa11.82□□□□□ -0.52
PTPN4-201ENST00000263708 MTM1Q13496 603 aa11.82□□□□□ -0.52
PTPN4-201ENST00000263708 TTLL9Q3SXZ7 439 aa11.82□□□□□ -0.52
PTPN4-201ENST00000263708 SLC30A9Q6PML9 568 aa11.82□□□□□ -0.52
PTPN4-201ENST00000263708 SLC9A7Q96T83 725 aa11.82□□□□□ -0.52
PTPN4-201ENST00000263708 RANBP17Q9H2T7 1088 aaKnown RBP11.82□□□□□ -0.52
PTPN4-201ENST00000263708 MIEF1Q9NQG6 463 aa11.82□□□□□ -0.52
PTPN4-201ENST00000263708 SLC9A8Q9Y2E8 581 aa11.82□□□□□ -0.52
PTPN4-201ENST00000263708 NUP160Q12769 1436 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms