RNA–Protein interactions for RNA: YLL011W

SOF1, Transcript of Protein required for biogenesis of 40S (small) ribosomal subunit, yeastyeast

Gene SOF1, Length 1,470 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SOF1YLL011W SEN1Q00416 2231 aaKnown RBP3.21□□□□□ -1.9
SOF1YLL011W RSA4P25382 515 aaKnown RBP3.21□□□□□ -1.9
SOF1YLL011W YEL045CP32616 141 aa3.21□□□□□ -1.9
SOF1YLL011W VMA11P32842 164 aa3.21□□□□□ -1.9
SOF1YLL011W DLS1P40366 167 aa3.21□□□□□ -1.9
SOF1YLL011W YFL019CP43576 117 aa3.21□□□□□ -1.9
SOF1YLL011W YFR045WP43617 309 aa3.21□□□□□ -1.9
SOF1YLL011W BUD13P46947 266 aaPredicted RBP3.21□□□□□ -1.9
SOF1YLL011W HAL1Q01766 294 aa3.21□□□□□ -1.9
SOF1YLL011W TMC1Q08422 150 aaPredicted RBP3.21□□□□□ -1.9
SOF1YLL011W TIM9O74700 87 aa3.2□□□□□ -1.9
SOF1YLL011W HAP2P06774 265 aa3.2□□□□□ -1.9
SOF1YLL011W GAA1P39012 614 aa3.2□□□□□ -1.9
SOF1YLL011W YER188WP40103 239 aa3.2□□□□□ -1.9
SOF1YLL011W PRE5P40302 234 aaKnown RBP3.2□□□□□ -1.9
SOF1YLL011W ECO1P43605 281 aa3.2□□□□□ -1.9
SOF1YLL011W SNX4P47057 423 aa3.2□□□□□ -1.9
SOF1YLL011W XPT1P47165 209 aa3.2□□□□□ -1.9
SOF1YLL011W HRD1Q08109 551 aa3.2□□□□□ -1.9
SOF1YLL011W AKR2Q12013 749 aa3.2□□□□□ -1.9
SOF1YLL011W YLR422WQ06409 1932 aa3.19□□□□□ -1.9
SOF1YLL011W MSB2P32334 1306 aa3.19□□□□□ -1.9
SOF1YLL011W HSP26P15992 214 aaKnown RBP RIP-Chip data3.19□□□□□ -1.9 RIP-Chip
SOF1YLL011W TKL2P33315 681 aa3.19□□□□□ -1.9
SOF1YLL011W YPL073CP40323 161 aa3.19□□□□□ -1.9
SOF1YLL011W DSK2P48510 373 aa3.19□□□□□ -1.9
SOF1YLL011W TSA2Q04120 196 aa3.19□□□□□ -1.9
SOF1YLL011W NAT3Q06504 195 aa3.19□□□□□ -1.9
SOF1YLL011W CPR5P35176 225 aa3.18□□□□□ -1.9
SOF1YLL011W UTH1P36135 365 aa3.18□□□□□ -1.9
SOF1YLL011W MRPL17P36528 281 aa3.18□□□□□ -1.9
SOF1YLL011W CTR2P38865 189 aa3.18□□□□□ -1.9
SOF1YLL011W VTC1P40046 129 aaRIP-Chip data3.18□□□□□ -1.9not detected
SOF1YLL011W YFL012WP43580 148 aa3.18□□□□□ -1.9
SOF1YLL011W YFR054CP43622 192 aa3.18□□□□□ -1.9
SOF1YLL011W CAB4P53332 305 aa3.18□□□□□ -1.9
SOF1YLL011W TIM8P57744 87 aa3.18□□□□□ -1.9
SOF1YLL011W YDR274CP87283 123 aa3.18□□□□□ -1.9
SOF1YLL011W FMN1Q03778 218 aa3.18□□□□□ -1.9
SOF1YLL011W PIN3Q06449 215 aa3.18□□□□□ -1.9
SOF1YLL011W YLR412C-AQ3E742 68 aa3.18□□□□□ -1.9
SOF1YLL011W SAS5Q99314 248 aa3.18□□□□□ -1.9
SOF1YLL011W HIS3P06633 220 aa3.17□□□□□ -1.9
SOF1YLL011W PAN3P36102 679 aaPredicted RBP3.17□□□□□ -1.9
SOF1YLL011W YER134CP40081 178 aa3.17□□□□□ -1.9
SOF1YLL011W SMD3P43321 101 aaKnown RBP3.17□□□□□ -1.9
SOF1YLL011W FIP1P45976 327 aa3.17□□□□□ -1.9
SOF1YLL011W AIF1P52923 378 aa3.17□□□□□ -1.9
SOF1YLL011W SPG3Q04398 127 aaPredicted RBP3.17□□□□□ -1.9
SOF1YLL011W YDR278CQ05612 105 aa3.17□□□□□ -1.9
SOF1YLL011W YOR268CQ08734 132 aa3.17□□□□□ -1.9
SOF1YLL011W YPT53P36019 220 aa3.16□□□□□ -1.9
SOF1YLL011W CCC1P47818 322 aa3.16□□□□□ -1.9
SOF1YLL011W YMR099CQ03161 297 aaKnown RBP3.16□□□□□ -1.9
SOF1YLL011W YTH1Q06102 208 aaPredicted RBP3.16□□□□□ -1.9
SOF1YLL011W YAR023CD6VPM8 179 aa3.16□□□□□ -1.9
SOF1YLL011W ATP5P09457 212 aa3.16□□□□□ -1.9
SOF1YLL011W SCL1P21243 252 aaKnown RBP3.16□□□□□ -1.9
SOF1YLL011W YKR032WP36127 104 aa3.16□□□□□ -1.9
SOF1YLL011W GLC8P41818 229 aa3.16□□□□□ -1.9
SOF1YLL011W GLR1P41921 483 aaKnown RBP3.16□□□□□ -1.9
SOF1YLL011W YGR026WP53217 278 aa3.16□□□□□ -1.9
SOF1YLL011W COF1Q03048 143 aaKnown RBP3.16□□□□□ -1.9
SOF1YLL011W VPS71Q03433 280 aa3.16□□□□□ -1.9
SOF1YLL011W FYV12Q08559 129 aa3.16□□□□□ -1.9
SOF1YLL011W CPA1P07258 411 aaKnown RBP3.15□□□□□ -1.91
SOF1YLL011W GVP36P40531 326 aaKnown RBP3.15□□□□□ -1.91
SOF1YLL011W YPR063CQ12160 140 aa3.15□□□□□ -1.91
SOF1YLL011W WIP1Q2V2P8 89 aa3.15□□□□□ -1.91
SOF1YLL011W SLO1Q3E784 85 aa3.15□□□□□ -1.91
SOF1YLL011W ODC2Q99297 307 aa3.15□□□□□ -1.91
SOF1YLL011W SHE2P36068 246 aaKnown RBP RIP-Chip data3.14□□□□□ -1.91not detected
SOF1YLL011W ERJ5P43613 295 aaPredicted RBP3.14□□□□□ -1.91
SOF1YLL011W YGL193CP53097 103 aa3.14□□□□□ -1.91
SOF1YLL011W TIM13P53299 105 aa3.14□□□□□ -1.91
SOF1YLL011W YGR219WP53307 113 aa3.14□□□□□ -1.91
SOF1YLL011W HHO1P53551 258 aa3.14□□□□□ -1.91
SOF1YLL011W YPD1Q07688 167 aa3.14□□□□□ -1.91
SOF1YLL011W Q0144Q9ZZW2 109 aa3.14□□□□□ -1.91
SOF1YLL011W MSW1P04803 379 aa3.13□□□□□ -1.91
SOF1YLL011W NSP1P14907 823 aaKnown RBP3.13□□□□□ -1.91
SOF1YLL011W SPT14P32363 452 aa3.13□□□□□ -1.91
SOF1YLL011W MID2P36027 376 aa3.13□□□□□ -1.91
SOF1YLL011W YNL200CP40165 246 aaKnown RBP3.13□□□□□ -1.91
SOF1YLL011W PIR5P46999 287 aa3.13□□□□□ -1.91
SOF1YLL011W SBH1P52870 82 aa3.13□□□□□ -1.91
SOF1YLL011W YDR366CP87287 132 aa3.13□□□□□ -1.91
SOF1YLL011W YOR214CQ12282 236 aa3.13□□□□□ -1.91
SOF1YLL011W BEM2P39960 2167 aaKnown RBP3.13□□□□□ -1.91
SOF1YLL011W POR1P04840 283 aaKnown RBP3.12□□□□□ -1.91
SOF1YLL011W TIR1P10863 254 aa3.12□□□□□ -1.91
SOF1YLL011W RPS1AP33442 255 aaKnown RBP3.12□□□□□ -1.91
SOF1YLL011W MRPS9P38120 278 aa3.12□□□□□ -1.91
SOF1YLL011W RPS20P38701 121 aaKnown RBP3.12□□□□□ -1.91
SOF1YLL011W FYV4P38783 130 aaPredicted RBP3.12□□□□□ -1.91
SOF1YLL011W YER181CP40097 107 aa3.12□□□□□ -1.91
SOF1YLL011W DIG2Q03373 323 aaKnown RBP3.12□□□□□ -1.91
SOF1YLL011W GAL83Q04739 417 aa3.12□□□□□ -1.91
SOF1YLL011W FRQ1Q06389 190 aa3.12□□□□□ -1.91
SOF1YLL011W ATO3Q12359 275 aa3.12□□□□□ -1.91
Retrieved 100 of 5,963 RNA–protein pairs in 62.8 ms