RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 ERO1BQ86YB8 467 aa9.38□□□□□ -0.91
PDLIM5-222ENST00000615540 GABPB2Q8TAK5 448 aaPredicted RBP9.38□□□□□ -0.91
PDLIM5-222ENST00000615540 BSNDQ8WZ55 320 aa9.38□□□□□ -0.91
PDLIM5-222ENST00000615540 ZNF560Q96MR9 790 aa9.38□□□□□ -0.91
PDLIM5-222ENST00000615540 TLK1Q9UKI8 766 aa9.38□□□□□ -0.91
PDLIM5-222ENST00000615540 DDX60Q8IY21 1712 aaKnown RBP9.38□□□□□ -0.91
PDLIM5-222ENST00000615540 LAMA4Q16363 1823 aa9.38□□□□□ -0.91
PDLIM5-222ENST00000615540 LACTBL1A8MY62 500 aa9.37□□□□□ -0.91
PDLIM5-222ENST00000615540 ETS1P14921 441 aa9.37□□□□□ -0.91
PDLIM5-222ENST00000615540 CASP2P42575 452 aa9.37□□□□□ -0.91
PDLIM5-222ENST00000615540 AGBL2Q5U5Z8 902 aa9.37□□□□□ -0.91
PDLIM5-222ENST00000615540 HIPK4Q8NE63 616 aa9.37□□□□□ -0.91
PDLIM5-222ENST00000615540 HSD17B14Q9BPX1 270 aa9.37□□□□□ -0.91
PDLIM5-222ENST00000615540 MRIQ9BWK5 157 aa9.37□□□□□ -0.91
PDLIM5-222ENST00000615540 RRAGCQ9HB90 399 aa9.37□□□□□ -0.91
PDLIM5-222ENST00000615540 MYH3P11055 1940 aa9.37□□□□□ -0.91
PDLIM5-222ENST00000615540 C17orf102A2RUQ5 167 aa9.37□□□□□ -0.91
PDLIM5-222ENST00000615540 GTPBP10A4D1E9 387 aaKnown RBP9.37□□□□□ -0.91
PDLIM5-222ENST00000615540 EEF2KO00418 725 aaKnown RBP9.37□□□□□ -0.91
PDLIM5-222ENST00000615540 INSRRP14616 1297 aa9.37□□□□□ -0.91
PDLIM5-222ENST00000615540 PAN2Q504Q3 1202 aaKnown RBP9.37□□□□□ -0.91
PDLIM5-222ENST00000615540 TDRD10Q5VZ19 366 aaKnown RBP9.37□□□□□ -0.91
PDLIM5-222ENST00000615540 BTNL9Q6UXG8 535 aa9.37□□□□□ -0.91
PDLIM5-222ENST00000615540 ANO5Q75V66 913 aa9.37□□□□□ -0.91
PDLIM5-222ENST00000615540 NIPA1Q7RTP0 329 aa9.37□□□□□ -0.91
PDLIM5-222ENST00000615540 OSMRQ99650 979 aa9.37□□□□□ -0.91
PDLIM5-222ENST00000615540 MICAL2O94851 1124 aa9.37□□□□□ -0.91
PDLIM5-222ENST00000615540 ADORA2AP29274 412 aa9.37□□□□□ -0.91
PDLIM5-222ENST00000615540 HUNKP57058 714 aa9.37□□□□□ -0.91
PDLIM5-222ENST00000615540 TPI1P60174 286 aa9.37□□□□□ -0.91
PDLIM5-222ENST00000615540 KYAT1Q16773 422 aa9.37□□□□□ -0.91
PDLIM5-222ENST00000615540 MMEL1Q495T6 779 aa9.37□□□□□ -0.91
PDLIM5-222ENST00000615540 HYIQ5T013 277 aa9.37□□□□□ -0.91
PDLIM5-222ENST00000615540 GJC2Q5T442 439 aaPredicted RBP9.37□□□□□ -0.91
PDLIM5-222ENST00000615540 KIAA1841Q6NSI8 718 aa9.37□□□□□ -0.91
PDLIM5-222ENST00000615540 LLGL2Q6P1M3 1020 aa9.37□□□□□ -0.91
PDLIM5-222ENST00000615540 TRMT10CQ7L0Y3 403 aaKnown RBP9.37□□□□□ -0.91
PDLIM5-222ENST00000615540 GPC2Q8N158 579 aa9.37□□□□□ -0.91
PDLIM5-222ENST00000615540 TRIM56Q9BRZ2 755 aaKnown RBP9.37□□□□□ -0.91
PDLIM5-222ENST00000615540 AJAP1Q9UKB5 411 aaPredicted RBP9.37□□□□□ -0.91
PDLIM5-222ENST00000615540 RAB21Q9UL25 225 aa9.37□□□□□ -0.91
PDLIM5-222ENST00000615540 H3BRJ5 948 aa9.37□□□□□ -0.91
PDLIM5-222ENST00000615540 IRF6O14896 467 aa9.37□□□□□ -0.91
PDLIM5-222ENST00000615540 TBC1D12O60347 775 aa9.37□□□□□ -0.91
PDLIM5-222ENST00000615540 RPS6KA5O75582 802 aa9.37□□□□□ -0.91
PDLIM5-222ENST00000615540 HSPA4LO95757 839 aa9.37□□□□□ -0.91
PDLIM5-222ENST00000615540 SYF2O95926 243 aaKnown RBP9.37□□□□□ -0.91
PDLIM5-222ENST00000615540 GTF2A2P52657 109 aa9.37□□□□□ -0.91
PDLIM5-222ENST00000615540 NSUN2Q08J23 767 aaKnown RBP eCLIP9.37□□□□□ -0.91
PDLIM5-222ENST00000615540 PRAMEF19Q5SWL8 479 aa9.37□□□□□ -0.91
PDLIM5-222ENST00000615540 POTEAQ6S8J7 498 aa9.37□□□□□ -0.91
PDLIM5-222ENST00000615540 SPOCD1Q6ZMY3 1216 aa9.37□□□□□ -0.91
PDLIM5-222ENST00000615540 RNF135Q8IUD6 432 aa9.37□□□□□ -0.91
PDLIM5-222ENST00000615540 NLGN2Q8NFZ4 835 aa9.37□□□□□ -0.91
PDLIM5-222ENST00000615540 CDCA5Q96FF9 252 aa9.37□□□□□ -0.91
PDLIM5-222ENST00000615540 SMYD3Q9H7B4 428 aa9.37□□□□□ -0.91
PDLIM5-222ENST00000615540 PCMTD2Q9NV79 361 aa9.37□□□□□ -0.91
PDLIM5-222ENST00000615540 PPARGC1AQ9UBK2 798 aaKnown RBP9.37□□□□□ -0.91
PDLIM5-222ENST00000615540 GIPC1O14908 333 aa9.37□□□□□ -0.91
PDLIM5-222ENST00000615540 CFLARO15519 480 aa9.37□□□□□ -0.91
PDLIM5-222ENST00000615540 CCNE2O96020 404 aa9.37□□□□□ -0.91
PDLIM5-222ENST00000615540 PTGER2P43116 358 aa9.37□□□□□ -0.91
PDLIM5-222ENST00000615540 KDM7AQ6ZMT4 941 aa9.37□□□□□ -0.91
PDLIM5-222ENST00000615540 C3orf62Q6ZUJ4 267 aa9.37□□□□□ -0.91
PDLIM5-222ENST00000615540 PID1Q7Z2X4 250 aa9.37□□□□□ -0.91
PDLIM5-222ENST00000615540 TMEM161BQ8NDZ6 487 aa9.37□□□□□ -0.91
PDLIM5-222ENST00000615540 PARD3BQ8TEW8 1205 aa9.37□□□□□ -0.91
PDLIM5-222ENST00000615540 CARD9Q9H257 536 aa9.37□□□□□ -0.91
PDLIM5-222ENST00000615540 SLC12A6Q9UHW9 1150 aa9.37□□□□□ -0.91
PDLIM5-222ENST00000615540 IPO11Q9UI26 975 aaKnown RBP9.37□□□□□ -0.91
PDLIM5-222ENST00000615540 SALL4Q9UJQ4 1053 aa9.37□□□□□ -0.91
PDLIM5-222ENST00000615540 AFG3L2Q9Y4W6 797 aa9.37□□□□□ -0.91
PDLIM5-222ENST00000615540 MAGEB2O15479 319 aa9.36□□□□□ -0.91
PDLIM5-222ENST00000615540 KRT37O76014 449 aa9.36□□□□□ -0.91
PDLIM5-222ENST00000615540 HSD17B4P51659 736 aa9.36□□□□□ -0.91
PDLIM5-222ENST00000615540 NOTUMQ6P988 496 aa9.36□□□□□ -0.91
PDLIM5-222ENST00000615540 PDCD6IPQ8WUM4 868 aaKnown RBP9.36□□□□□ -0.91
PDLIM5-222ENST00000615540 BEGAINQ9BUH8 593 aa9.36□□□□□ -0.91
PDLIM5-222ENST00000615540 ALDH18A1P54886 795 aaKnown RBP9.36□□□□□ -0.91
PDLIM5-222ENST00000615540 ASPHQ12797 758 aa9.36□□□□□ -0.91
PDLIM5-222ENST00000615540 GRIK4Q16099 956 aa9.36□□□□□ -0.91
PDLIM5-222ENST00000615540 IRF2BP2Q7Z5L9 587 aa9.36□□□□□ -0.91
PDLIM5-222ENST00000615540 KIF2BQ8N4N8 673 aa9.36□□□□□ -0.91
PDLIM5-222ENST00000615540 FBXO25Q8TCJ0 367 aa9.36□□□□□ -0.91
PDLIM5-222ENST00000615540 MARCOQ9UEW3 520 aaPredicted RBP9.36□□□□□ -0.91
PDLIM5-222ENST00000615540 PLIN4Q96Q06 1357 aa9.36□□□□□ -0.91
PDLIM5-222ENST00000615540 ASAP2O43150 1006 aa9.36□□□□□ -0.91
PDLIM5-222ENST00000615540 SHBGP04278 402 aa9.36□□□□□ -0.91
PDLIM5-222ENST00000615540 RARAP10276 462 aa9.36□□□□□ -0.91
PDLIM5-222ENST00000615540 OTUD4Q01804 1114 aaKnown RBP9.36□□□□□ -0.91
PDLIM5-222ENST00000615540 PTK7Q13308 1070 aa9.36□□□□□ -0.91
PDLIM5-222ENST00000615540 STAT4Q14765 748 aa9.36□□□□□ -0.91
PDLIM5-222ENST00000615540 SH2D4BQ5SQS7 431 aa9.36□□□□□ -0.91
PDLIM5-222ENST00000615540 ATG16L1Q676U5 607 aa9.36□□□□□ -0.91
PDLIM5-222ENST00000615540 SPATA21Q7Z572 469 aa9.36□□□□□ -0.91
PDLIM5-222ENST00000615540 CRLF3Q8IUI8 442 aa9.36□□□□□ -0.91
PDLIM5-222ENST00000615540 SPATA2LQ8IUW3 424 aaPredicted RBP9.36□□□□□ -0.91
PDLIM5-222ENST00000615540 URGCPQ8TCY9 931 aa9.36□□□□□ -0.91
PDLIM5-222ENST00000615540 CAVIN3Q969G5 261 aa9.36□□□□□ -0.91
PDLIM5-222ENST00000615540 L3MBTL3Q96JM7 780 aaPredicted RBP9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms