RNA–Protein interactions for RNA: ENST00000590096.1

ATG4D-212, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 5

Gene ATG4D, Length 1,282 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-212ENST00000590096 CYP4F11Q9HBI6 524 aa22.81■■□□□ 1.24
ATG4D-212ENST00000590096 UTP3Q9NQZ2 479 aaKnown RBP eCLIP22.81■■□□□ 1.242e-45■■■■■ 353
ATG4D-212ENST00000590096 RAB20Q9NX57 234 aa22.81■■□□□ 1.24
ATG4D-212ENST00000590096 UTP18Q9Y5J1 556 aaKnown RBP eCLIP22.81■■□□□ 1.24
ATG4D-212ENST00000590096 HNRNPA1P09651 372 aaKnown RBP eCLIP22.8■■□□□ 1.24
ATG4D-212ENST00000590096 MTHFRP42898 656 aa22.8■■□□□ 1.24
ATG4D-212ENST00000590096 FMO5P49326 533 aa22.8■■□□□ 1.24
ATG4D-212ENST00000590096 CETN1Q12798 172 aa22.8■■□□□ 1.24
ATG4D-212ENST00000590096 SMARCB1Q12824 385 aa22.8■■□□□ 1.24
ATG4D-212ENST00000590096 SMAD2Q15796 467 aaKnown RBP22.8■■□□□ 1.24
ATG4D-212ENST00000590096 ATAT1Q5SQI0 421 aa22.8■■□□□ 1.24
ATG4D-212ENST00000590096 SPOPLQ6IQ16 392 aa22.8■■□□□ 1.24
ATG4D-212ENST00000590096 TCEAL8Q8IYN2 117 aa22.8■■□□□ 1.24
ATG4D-212ENST00000590096 OR6B3Q8NGW1 331 aa22.8■■□□□ 1.24
ATG4D-212ENST00000590096 ELMO3Q96BJ8 720 aa22.8■■□□□ 1.24
ATG4D-212ENST00000590096 PGLYRP2Q96PD5 576 aa22.8■■□□□ 1.24
ATG4D-212ENST00000590096 MRPL45Q9BRJ2 306 aaKnown RBP22.8■■□□□ 1.24
ATG4D-212ENST00000590096 MAGEC2Q9UBF1 373 aaPredicted RBP22.8■■□□□ 1.24
ATG4D-212ENST00000590096 IL9P15248 144 aa22.79■■□□□ 1.24
ATG4D-212ENST00000590096 ACAT1P24752 427 aaKnown RBP22.79■■□□□ 1.24
ATG4D-212ENST00000590096 HOXA9P31269 272 aa22.79■■□□□ 1.24
ATG4D-212ENST00000590096 GNL1P36915 607 aaPredicted RBP22.79■■□□□ 1.24
ATG4D-212ENST00000590096 TYRO3Q06418 890 aa22.79■■□□□ 1.24
ATG4D-212ENST00000590096 WDR44Q5JSH3 913 aa22.79■■□□□ 1.24
ATG4D-212ENST00000590096 INTS6LQ5JSJ4 861 aaKnown RBP22.79■■□□□ 1.24
ATG4D-212ENST00000590096 CYP26C1Q6V0L0 522 aa22.79■■□□□ 1.24
ATG4D-212ENST00000590096 GPR149Q86SP6 731 aa22.79■■□□□ 1.24
ATG4D-212ENST00000590096 NECTIN4Q96NY8 510 aa22.79■■□□□ 1.24
ATG4D-212ENST00000590096 PRKD2Q9BZL6 878 aa22.79■■□□□ 1.24
ATG4D-212ENST00000590096 SMYD3Q9H7B4 428 aa22.79■■□□□ 1.24
ATG4D-212ENST00000590096 PIDD1Q9HB75 910 aa22.79■■□□□ 1.24
ATG4D-212ENST00000590096 BDP1A6H8Y1 2624 aa22.78■■□□□ 1.24
ATG4D-212ENST00000590096 MTMR11A4FU01 709 aa22.78■■□□□ 1.24
ATG4D-212ENST00000590096 XYLBO75191 536 aa22.78■■□□□ 1.24
ATG4D-212ENST00000590096 SEC24AO95486 1093 aa22.78■■□□□ 1.24
ATG4D-212ENST00000590096 LRG1P02750 347 aa22.78■■□□□ 1.24
ATG4D-212ENST00000590096 AFPP02771 609 aaKnown RBP22.78■■□□□ 1.24
ATG4D-212ENST00000590096 WEE2P0C1S8 567 aa22.78■■□□□ 1.24
ATG4D-212ENST00000590096 BMP1P13497 986 aa22.78■■□□□ 1.24
ATG4D-212ENST00000590096 MTIF2P46199 727 aaKnown RBP22.78■■□□□ 1.24
ATG4D-212ENST00000590096 RAP1GAPP47736 663 aa22.78■■□□□ 1.24
ATG4D-212ENST00000590096 KCNH2Q12809 1159 aa22.78■■□□□ 1.24
ATG4D-212ENST00000590096 CBX2Q14781 532 aaPredicted RBP22.78■■□□□ 1.24
ATG4D-212ENST00000590096 C11orf57Q6ZUT1 292 aaPredicted RBP22.78■■□□□ 1.24
ATG4D-212ENST00000590096 ENOX1Q8TC92 643 aaKnown RBP22.78■■□□□ 1.24
ATG4D-212ENST00000590096 C2orf15Q8WU43 125 aaKnown RBP22.78■■□□□ 1.24
ATG4D-212ENST00000590096 SUSD6Q92537 303 aa22.78■■□□□ 1.24
ATG4D-212ENST00000590096 SMG7Q92540 1137 aaKnown RBP22.78■■□□□ 1.24
ATG4D-212ENST00000590096 SEMA4DQ92854 862 aa22.78■■□□□ 1.24
ATG4D-212ENST00000590096 NIF3L1Q9GZT8 377 aa22.78■■□□□ 1.24
ATG4D-212ENST00000590096 CDH9Q9ULB4 789 aa22.78■■□□□ 1.24
ATG4D-212ENST00000590096 COQ4Q9Y3A0 265 aa22.78■■□□□ 1.24
ATG4D-212ENST00000590096 PMM2O15305 246 aa22.77■■□□□ 1.24
ATG4D-212ENST00000590096 P4HA2O15460 535 aa22.77■■□□□ 1.24
ATG4D-212ENST00000590096 PDGFRBP09619 1106 aa22.77■■□□□ 1.24
ATG4D-212ENST00000590096 LMO2P25791 158 aa22.77■■□□□ 1.24
ATG4D-212ENST00000590096 NFE2Q16621 373 aaPredicted RBP22.77■■□□□ 1.24
ATG4D-212ENST00000590096 ATAD1Q8NBU5 361 aa22.77■■□□□ 1.24
ATG4D-212ENST00000590096 SYT15Q9BQS2 421 aa22.77■■□□□ 1.24
ATG4D-212ENST00000590096 RHOBTB2Q9BYZ6 727 aa22.77■■□□□ 1.24
ATG4D-212ENST00000590096 NAT10Q9H0A0 1025 aaKnown RBP22.77■■□□□ 1.24
ATG4D-212ENST00000590096 DNAJC25Q9H1X3 360 aa22.77■■□□□ 1.24
ATG4D-212ENST00000590096 APOBEC3GQ9HC16 384 aaKnown RBP22.77■■□□□ 1.24
ATG4D-212ENST00000590096 NFE2L3Q9Y4A8 694 aa22.77■■□□□ 1.24
ATG4D-212ENST00000590096 INSL5Q9Y5Q6 135 aa22.77■■□□□ 1.24
ATG4D-212ENST00000590096 A8MXQ7 604 aa22.76■■□□□ 1.23
ATG4D-212ENST00000590096 CCL16O15467 120 aa22.76■■□□□ 1.23
ATG4D-212ENST00000590096 HCRTO43612 131 aa22.76■■□□□ 1.23
ATG4D-212ENST00000590096 ASPAP45381 313 aa22.76■■□□□ 1.23
ATG4D-212ENST00000590096 CDH8P55286 799 aa22.76■■□□□ 1.23
ATG4D-212ENST00000590096 DUSP4Q13115 394 aa22.76■■□□□ 1.23
ATG4D-212ENST00000590096 LRRTM3Q86VH5 581 aa22.76■■□□□ 1.23
ATG4D-212ENST00000590096 IRF2BP1Q8IU81 584 aa22.76■■□□□ 1.23
ATG4D-212ENST00000590096 ELMOD1Q8N336 334 aa22.76■■□□□ 1.23
ATG4D-212ENST00000590096 SPPL2BQ8TCT7 592 aa22.76■■□□□ 1.23
ATG4D-212ENST00000590096 ZNF707Q96C28 371 aaPredicted RBP22.76■■□□□ 1.23
ATG4D-212ENST00000590096 ABI2Q9NYB9 513 aaPredicted RBP22.76■■□□□ 1.23
ATG4D-212ENST00000590096 HSFX1Q9UBD0 423 aa22.76■■□□□ 1.23
ATG4D-212ENST00000590096 CDH22Q9UJ99 828 aa22.76■■□□□ 1.23
ATG4D-212ENST00000590096 PCDHB5Q9Y5E4 795 aa22.76■■□□□ 1.23
ATG4D-212ENST00000590096 TCF20Q9UGU0 1960 aaKnown RBP22.76■■□□□ 1.23
ATG4D-212ENST00000590096 LRRN2O75325 713 aa22.75■■□□□ 1.23
ATG4D-212ENST00000590096 PAPLNO95428 1278 aa22.75■■□□□ 1.23
ATG4D-212ENST00000590096 VNN2O95498 520 aa22.75■■□□□ 1.23
ATG4D-212ENST00000590096 POU2F2P09086 479 aa22.75■■□□□ 1.23
ATG4D-212ENST00000590096 PSMC1P62191 440 aaKnown RBP22.75■■□□□ 1.23
ATG4D-212ENST00000590096 PLD1Q13393 1074 aa22.75■■□□□ 1.23
ATG4D-212ENST00000590096 MAPRE1Q15691 268 aaKnown RBP22.75■■□□□ 1.23
ATG4D-212ENST00000590096 HSP90AA4PQ58FG1 418 aa22.75■■□□□ 1.23
ATG4D-212ENST00000590096 FAXDC2Q96IV6 333 aa22.75■■□□□ 1.23
ATG4D-212ENST00000590096 BCO2Q9BYV7 579 aa22.75■■□□□ 1.23
ATG4D-212ENST00000590096 CYP3A43Q9HB55 503 aa22.75■■□□□ 1.23
ATG4D-212ENST00000590096 GTF3C4Q9UKN8 822 aa22.75■■□□□ 1.23
ATG4D-212ENST00000590096 SLC27A5Q9Y2P5 690 aa22.75■■□□□ 1.23
ATG4D-212ENST00000590096 YIPF1Q9Y548 306 aa22.75■■□□□ 1.23
ATG4D-212ENST00000590096 C2orf16Q68DN1 1984 aa22.75■■□□□ 1.23
ATG4D-212ENST00000590096 TRIM21P19474 475 aaKnown RBP22.74■■□□□ 1.23
ATG4D-212ENST00000590096 ALDH1A3P47895 512 aa22.74■■□□□ 1.23
ATG4D-212ENST00000590096 TUFMP49411 452 aaKnown RBP22.74■■□□□ 1.23
ATG4D-212ENST00000590096 MYL5Q02045 173 aa22.74■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms