RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 HOXA9P31269 272 aa14.55□□□□□ -0.08
SHMT2-228ENST00000557302 MARSP56192 900 aaKnown RBP14.55□□□□□ -0.08
SHMT2-228ENST00000557302 SMARCB1Q12824 385 aa14.55□□□□□ -0.08
SHMT2-228ENST00000557302 FBXL13Q8NEE6 735 aa14.55□□□□□ -0.08
SHMT2-228ENST00000557302 ADAMTS19Q8TE59 1207 aa14.55□□□□□ -0.08
SHMT2-228ENST00000557302 SMG7Q92540 1137 aaKnown RBP14.55□□□□□ -0.08
SHMT2-228ENST00000557302 ZNF707Q96C28 371 aaPredicted RBP14.55□□□□□ -0.08
SHMT2-228ENST00000557302 PGLYRP2Q96PD5 576 aa14.55□□□□□ -0.08
SHMT2-228ENST00000557302 MED15Q96RN5 788 aa14.55□□□□□ -0.08
SHMT2-228ENST00000557302 MRPL45Q9BRJ2 306 aaKnown RBP14.55□□□□□ -0.08
SHMT2-228ENST00000557302 SNX25Q9H3E2 840 aa14.55□□□□□ -0.08
SHMT2-228ENST00000557302 PIDD1Q9HB75 910 aa14.55□□□□□ -0.08
SHMT2-228ENST00000557302 PRKAG3Q9UGI9 489 aa14.55□□□□□ -0.08
SHMT2-228ENST00000557302 POLIQ9UNA4 740 aa14.55□□□□□ -0.08
SHMT2-228ENST00000557302 INSL5Q9Y5Q6 135 aa14.55□□□□□ -0.08
SHMT2-228ENST00000557302 MTMR11A4FU01 709 aa14.54□□□□□ -0.08
SHMT2-228ENST00000557302 CCL16O15467 120 aa14.54□□□□□ -0.08
SHMT2-228ENST00000557302 N4BP1O75113 896 aaKnown RBP14.54□□□□□ -0.08
SHMT2-228ENST00000557302 SEC24AO95486 1093 aa14.54□□□□□ -0.08
SHMT2-228ENST00000557302 LRG1P02750 347 aa14.54□□□□□ -0.08
SHMT2-228ENST00000557302 POU2F2P09086 479 aa14.54□□□□□ -0.08
SHMT2-228ENST00000557302 ACAT1P24752 427 aaKnown RBP14.54□□□□□ -0.08
SHMT2-228ENST00000557302 GNL1P36915 607 aaPredicted RBP14.54□□□□□ -0.08
SHMT2-228ENST00000557302 NOP14P78316 857 aaKnown RBP14.54□□□□□ -0.08
SHMT2-228ENST00000557302 NFE2Q16621 373 aaPredicted RBP14.54□□□□□ -0.08
SHMT2-228ENST00000557302 STX1AQ16623 288 aa14.54□□□□□ -0.08
SHMT2-228ENST00000557302 KLHL40Q2TBA0 621 aa14.54□□□□□ -0.08
SHMT2-228ENST00000557302 CBWD6Q4V339 395 aa14.54□□□□□ -0.08
SHMT2-228ENST00000557302 INTS6LQ5JSJ4 861 aaKnown RBP14.54□□□□□ -0.08
SHMT2-228ENST00000557302 CBWD3Q5JTY5 395 aa14.54□□□□□ -0.08
SHMT2-228ENST00000557302 CBWD5Q5RIA9 395 aa14.54□□□□□ -0.08
SHMT2-228ENST00000557302 SPOPLQ6IQ16 392 aa14.54□□□□□ -0.08
SHMT2-228ENST00000557302 CAVIN1Q6NZI2 390 aaKnown RBP14.54□□□□□ -0.08
SHMT2-228ENST00000557302 SCARA5Q6ZMJ2 495 aa14.54□□□□□ -0.08
SHMT2-228ENST00000557302 TRIM59Q8IWR1 403 aa14.54□□□□□ -0.08
SHMT2-228ENST00000557302 ATAD1Q8NBU5 361 aa14.54□□□□□ -0.08
SHMT2-228ENST00000557302 FEZF2Q8TBJ5 459 aa14.54□□□□□ -0.08
SHMT2-228ENST00000557302 C2orf15Q8WU43 125 aaKnown RBP14.54□□□□□ -0.08
SHMT2-228ENST00000557302 ELMO3Q96BJ8 720 aa14.54□□□□□ -0.08
SHMT2-228ENST00000557302 PI4K2AQ9BTU6 479 aa14.54□□□□□ -0.08
SHMT2-228ENST00000557302 PHF7Q9BWX1 381 aaPredicted RBP14.54□□□□□ -0.08
SHMT2-228ENST00000557302 POMKQ9H5K3 350 aa14.54□□□□□ -0.08
SHMT2-228ENST00000557302 SMYD3Q9H7B4 428 aa14.54□□□□□ -0.08
SHMT2-228ENST00000557302 UTP3Q9NQZ2 479 aaKnown RBP eCLIP14.54□□□□□ -0.08
SHMT2-228ENST00000557302 ANO10Q9NW15 660 aa14.54□□□□□ -0.08
SHMT2-228ENST00000557302 RAB20Q9NX57 234 aa14.54□□□□□ -0.08
SHMT2-228ENST00000557302 BDP1A6H8Y1 2624 aa14.53□□□□□ -0.08
SHMT2-228ENST00000557302 HCRTO43612 131 aa14.53□□□□□ -0.08
SHMT2-228ENST00000557302 VNN2O95498 520 aa14.53□□□□□ -0.08
SHMT2-228ENST00000557302 FMO5P49326 533 aa14.53□□□□□ -0.08
SHMT2-228ENST00000557302 DUSP4Q13115 394 aa14.53□□□□□ -0.08
SHMT2-228ENST00000557302 PLD1Q13393 1074 aa14.53□□□□□ -0.08
SHMT2-228ENST00000557302 WDR44Q5JSH3 913 aa14.53□□□□□ -0.08
SHMT2-228ENST00000557302 LRRTM3Q86VH5 581 aa14.53□□□□□ -0.08
SHMT2-228ENST00000557302 CREBRFQ8IUR6 639 aa14.53□□□□□ -0.08
SHMT2-228ENST00000557302 ADHFE1Q8IWW8 467 aa14.53□□□□□ -0.08
SHMT2-228ENST00000557302 OR6B3Q8NGW1 331 aa14.53□□□□□ -0.08
SHMT2-228ENST00000557302 SPPL2BQ8TCT7 592 aa14.53□□□□□ -0.08
SHMT2-228ENST00000557302 SEMA4DQ92854 862 aa14.53□□□□□ -0.08
SHMT2-228ENST00000557302 CNOT6LQ96LI5 555 aaKnown RBP14.53□□□□□ -0.08
SHMT2-228ENST00000557302 UHRF1Q96T88 793 aaPredicted RBP14.53□□□□□ -0.08
SHMT2-228ENST00000557302 SYT15Q9BQS2 421 aa14.53□□□□□ -0.08
SHMT2-228ENST00000557302 THAP9Q9H5L6 903 aa14.53□□□□□ -0.08
SHMT2-228ENST00000557302 HSFX1Q9UBD0 423 aa14.53□□□□□ -0.08
SHMT2-228ENST00000557302 CDH9Q9ULB4 789 aa14.53□□□□□ -0.08
SHMT2-228ENST00000557302 YIPF1Q9Y548 306 aa14.53□□□□□ -0.08
SHMT2-228ENST00000557302 PCDHB5Q9Y5E4 795 aa14.53□□□□□ -0.08
SHMT2-228ENST00000557302 UTP18Q9Y5J1 556 aaKnown RBP eCLIP14.53□□□□□ -0.08
SHMT2-228ENST00000557302 MTCL1Q9Y4B5 1905 aaKnown RBP14.53□□□□□ -0.08
SHMT2-228ENST00000557302 NCOR1O75376 2440 aa14.52□□□□□ -0.08
SHMT2-228ENST00000557302 C5orf42Q9H799 3197 aa14.52□□□□□ -0.08
SHMT2-228ENST00000557302 A8MXQ7 604 aa14.52□□□□□ -0.09
SHMT2-228ENST00000557302 PDGFRBP09619 1106 aa14.52□□□□□ -0.09
SHMT2-228ENST00000557302 LMO2P25791 158 aa14.52□□□□□ -0.09
SHMT2-228ENST00000557302 ASPAP45381 313 aa14.52□□□□□ -0.09
SHMT2-228ENST00000557302 RAP1GAPP47736 663 aa14.52□□□□□ -0.09
SHMT2-228ENST00000557302 CDH8P55286 799 aa14.52□□□□□ -0.09
SHMT2-228ENST00000557302 PSMC1P62191 440 aaKnown RBP14.52□□□□□ -0.09
SHMT2-228ENST00000557302 ZP2Q05996 745 aa14.52□□□□□ -0.09
SHMT2-228ENST00000557302 TWF1Q12792 350 aa14.52□□□□□ -0.09
SHMT2-228ENST00000557302 CETN1Q12798 172 aa14.52□□□□□ -0.09
SHMT2-228ENST00000557302 FAM114A1Q8IWE2 563 aa14.52□□□□□ -0.09
SHMT2-228ENST00000557302 ELMOD1Q8N336 334 aa14.52□□□□□ -0.09
SHMT2-228ENST00000557302 NECAB3Q96P71 396 aaPredicted RBP14.52□□□□□ -0.09
SHMT2-228ENST00000557302 NIF3L1Q9GZT8 377 aa14.52□□□□□ -0.09
SHMT2-228ENST00000557302 CRISPLD1Q9H336 500 aa14.52□□□□□ -0.09
SHMT2-228ENST00000557302 APOBEC3GQ9HC16 384 aaKnown RBP14.52□□□□□ -0.09
SHMT2-228ENST00000557302 WDR6Q9NNW5 1121 aaKnown RBP14.52□□□□□ -0.09
SHMT2-228ENST00000557302 TMLHEQ9NVH6 421 aa14.52□□□□□ -0.09
SHMT2-228ENST00000557302 ABI2Q9NYB9 513 aaPredicted RBP14.52□□□□□ -0.09
SHMT2-228ENST00000557302 SLC27A5Q9Y2P5 690 aa14.52□□□□□ -0.09
SHMT2-228ENST00000557302 COQ4Q9Y3A0 265 aa14.52□□□□□ -0.09
SHMT2-228ENST00000557302 CLUHO75153 1309 aa14.51□□□□□ -0.09
SHMT2-228ENST00000557302 MYBPHLA2RUH7 354 aa14.51□□□□□ -0.09
SHMT2-228ENST00000557302 PMM2O15305 246 aa14.51□□□□□ -0.09
SHMT2-228ENST00000557302 P4HA2O15460 535 aa14.51□□□□□ -0.09
SHMT2-228ENST00000557302 LRRN2O75325 713 aa14.51□□□□□ -0.09
SHMT2-228ENST00000557302 AFPP02771 609 aaKnown RBP14.51□□□□□ -0.09
SHMT2-228ENST00000557302 ALDH1A3P47895 512 aa14.51□□□□□ -0.09
SHMT2-228ENST00000557302 TUFMP49411 452 aaKnown RBP14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms