RNA–Protein interactions for RNA: ENST00000557024.1

SYNE2-224, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 998 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-224ENST00000557024 XKR4Q5GH76 650 aa10.15□□□□□ -0.78
SYNE2-224ENST00000557024 C19orf48Q6RUI8 117 aa10.15□□□□□ -0.78
SYNE2-224ENST00000557024 ALKAL1Q6UXT8 129 aa10.15□□□□□ -0.78
SYNE2-224ENST00000557024 APBB1IPQ7Z5R6 666 aaPredicted RBP10.15□□□□□ -0.78
SYNE2-224ENST00000557024 TTC9BQ8N6N2 239 aa10.15□□□□□ -0.78
SYNE2-224ENST00000557024 FAM184AQ8NB25 1140 aa10.15□□□□□ -0.78
SYNE2-224ENST00000557024 RDH13Q8NBN7 331 aa10.15□□□□□ -0.78
SYNE2-224ENST00000557024 CHFRQ96EP1 664 aa10.15□□□□□ -0.78
SYNE2-224ENST00000557024 IPO9Q96P70 1041 aaKnown RBP10.15□□□□□ -0.78
SYNE2-224ENST00000557024 CDT1Q9H211 546 aa10.15□□□□□ -0.78
SYNE2-224ENST00000557024 FBRSL1Q9HCM7 1045 aaKnown RBP10.15□□□□□ -0.78
SYNE2-224ENST00000557024 GKN1Q9NS71 199 aa10.15□□□□□ -0.78
SYNE2-224ENST00000557024 THG1LQ9NWX6 298 aaKnown RBP10.15□□□□□ -0.78
SYNE2-224ENST00000557024 OBP2AQ9NY56 170 aa10.15□□□□□ -0.78
SYNE2-224ENST00000557024 SLC27A5Q9Y2P5 690 aa10.15□□□□□ -0.78
SYNE2-224ENST00000557024 KIF3AQ9Y496 699 aa10.15□□□□□ -0.78
SYNE2-224ENST00000557024 TIMM13Q9Y5L4 95 aaPredicted RBP10.15□□□□□ -0.78
SYNE2-224ENST00000557024 LOC400499M0QZD8 3231 aa10.14□□□□□ -0.79
SYNE2-224ENST00000557024 SPAARA0A1B0GVQ0 90 aa10.14□□□□□ -0.79
SYNE2-224ENST00000557024 OTOL1A6NHN0 477 aaPredicted RBP10.14□□□□□ -0.79
SYNE2-224ENST00000557024 TRDMT1O14717 391 aaKnown RBP10.14□□□□□ -0.79
SYNE2-224ENST00000557024 APBB3O95704 486 aa10.14□□□□□ -0.79
SYNE2-224ENST00000557024 SPATA31C1P0DKV0 1188 aa10.14□□□□□ -0.79
SYNE2-224ENST00000557024 KCNE1P15382 129 aa10.14□□□□□ -0.79
SYNE2-224ENST00000557024 CYP11B2P19099 503 aa10.14□□□□□ -0.79
SYNE2-224ENST00000557024 U2AF2P26368 475 aaKnown RBP eCLIP10.14□□□□□ -0.79
SYNE2-224ENST00000557024 IRX4P78413 519 aa10.14□□□□□ -0.79
SYNE2-224ENST00000557024 HMGN5P82970 282 aaKnown RBP10.14□□□□□ -0.79
SYNE2-224ENST00000557024 YWHAHQ04917 246 aaPredicted RBP10.14□□□□□ -0.79
SYNE2-224ENST00000557024 NR5A1Q13285 461 aa10.14□□□□□ -0.79
SYNE2-224ENST00000557024 PPP2R5AQ15172 486 aa10.14□□□□□ -0.79
SYNE2-224ENST00000557024 ZNF568Q3ZCX4 644 aa10.14□□□□□ -0.79
SYNE2-224ENST00000557024 SOWAHCQ53LP3 525 aaPredicted RBP10.14□□□□□ -0.79
SYNE2-224ENST00000557024 NAIF1Q69YI7 327 aaPredicted RBP10.14□□□□□ -0.79
SYNE2-224ENST00000557024 TRIM68Q6AZZ1 485 aa10.14□□□□□ -0.79
SYNE2-224ENST00000557024 CYP2U1Q7Z449 544 aa10.14□□□□□ -0.79
SYNE2-224ENST00000557024 DNAJB7Q7Z6W7 309 aaPredicted RBP10.14□□□□□ -0.79
SYNE2-224ENST00000557024 TMEM130Q8N3G9 435 aa10.14□□□□□ -0.79
SYNE2-224ENST00000557024 ATAD1Q8NBU5 361 aa10.14□□□□□ -0.79
SYNE2-224ENST00000557024 RPLP0P6Q8NHW5 317 aa10.14□□□□□ -0.79
SYNE2-224ENST00000557024 RNF166Q96A37 237 aaPredicted RBP10.14□□□□□ -0.79
SYNE2-224ENST00000557024 LLPHQ9BRT6 129 aaKnown RBP10.14□□□□□ -0.79
SYNE2-224ENST00000557024 POLR3CQ9BUI4 534 aaPredicted RBP10.14□□□□□ -0.79
SYNE2-224ENST00000557024 EBF3Q9H4W6 596 aa10.14□□□□□ -0.79
SYNE2-224ENST00000557024 HPS4Q9NQG7 708 aa10.14□□□□□ -0.79
SYNE2-224ENST00000557024 TNFSF13BQ9Y275 285 aa10.14□□□□□ -0.79
SYNE2-224ENST00000557024 MSRB2Q9Y3D2 182 aa10.14□□□□□ -0.79
SYNE2-224ENST00000557024 FLNBO75369 2602 aaKnown RBP10.14□□□□□ -0.79
SYNE2-224ENST00000557024 ARHGEF35A5YM69 484 aa10.13□□□□□ -0.79
SYNE2-224ENST00000557024 WNT7AO00755 349 aa10.13□□□□□ -0.79
SYNE2-224ENST00000557024 ARHGAP33O14559 1287 aa10.13□□□□□ -0.79
SYNE2-224ENST00000557024 MEFVO15553 781 aaPredicted RBP10.13□□□□□ -0.79
SYNE2-224ENST00000557024 NEMFO60524 1076 aa10.13□□□□□ -0.79
SYNE2-224ENST00000557024 MED24O75448 989 aa10.13□□□□□ -0.79
SYNE2-224ENST00000557024 OAZ2O95190 189 aa10.13□□□□□ -0.79
SYNE2-224ENST00000557024 HARSP12081 509 aaKnown RBP10.13□□□□□ -0.79
SYNE2-224ENST00000557024 ARSAP15289 507 aa10.13□□□□□ -0.79
SYNE2-224ENST00000557024 MAPK8P45983 427 aa10.13□□□□□ -0.79
SYNE2-224ENST00000557024 CDR1P51861 262 aa10.13□□□□□ -0.79
SYNE2-224ENST00000557024 DGKEP52429 567 aa10.13□□□□□ -0.79
SYNE2-224ENST00000557024 SIM1P81133 766 aaPredicted RBP10.13□□□□□ -0.79
SYNE2-224ENST00000557024 CUL4AQ13619 759 aa10.13□□□□□ -0.79
SYNE2-224ENST00000557024 RUNX3Q13761 415 aa10.13□□□□□ -0.79
SYNE2-224ENST00000557024 DMC1Q14565 340 aa10.13□□□□□ -0.79
SYNE2-224ENST00000557024 PMS2CLQ68D20 193 aa10.13□□□□□ -0.79
SYNE2-224ENST00000557024 CENPPQ6IPU0 288 aa10.13□□□□□ -0.79
SYNE2-224ENST00000557024 SYT13Q7L8C5 426 aa10.13□□□□□ -0.79
SYNE2-224ENST00000557024 CATSPER3Q86XQ3 398 aa10.13□□□□□ -0.79
SYNE2-224ENST00000557024 WASF1Q92558 559 aa10.13□□□□□ -0.79
SYNE2-224ENST00000557024 PSMG2Q969U7 264 aa10.13□□□□□ -0.79
SYNE2-224ENST00000557024 INTS4Q96HW7 963 aaKnown RBP10.13□□□□□ -0.79
SYNE2-224ENST00000557024 IFT74Q96LB3 600 aa10.13□□□□□ -0.79
SYNE2-224ENST00000557024 ACAP3Q96P50 834 aa10.13□□□□□ -0.79
SYNE2-224ENST00000557024 NACC1Q96RE7 527 aa10.13□□□□□ -0.79
SYNE2-224ENST00000557024 FAM83CQ9BQN1 747 aa10.13□□□□□ -0.79
SYNE2-224ENST00000557024 TPSD1Q9BZJ3 242 aa10.13□□□□□ -0.79
SYNE2-224ENST00000557024 TASP1Q9H6P5 420 aa10.13□□□□□ -0.79
SYNE2-224ENST00000557024 TUFT1Q9NNX1 390 aa10.13□□□□□ -0.79
SYNE2-224ENST00000557024 CNTN3Q9P232 1028 aa10.13□□□□□ -0.79
SYNE2-224ENST00000557024 ORC3Q9UBD5 711 aaPredicted RBP10.13□□□□□ -0.79
SYNE2-224ENST00000557024 TUBGCP4Q9UGJ1 667 aa10.13□□□□□ -0.79
SYNE2-224ENST00000557024 EBF1Q9UH73 591 aa10.13□□□□□ -0.79
SYNE2-224ENST00000557024 K7ERI5 159 aa10.12□□□□□ -0.79
SYNE2-224ENST00000557024 FGF19O95750 216 aa10.12□□□□□ -0.79
SYNE2-224ENST00000557024 XBP1P17861 261 aa10.12□□□□□ -0.79
SYNE2-224ENST00000557024 BCKDHBP21953 392 aa10.12□□□□□ -0.79
SYNE2-224ENST00000557024 DHPSP49366 369 aaPredicted RBP10.12□□□□□ -0.79
SYNE2-224ENST00000557024 GALK1P51570 392 aa10.12□□□□□ -0.79
SYNE2-224ENST00000557024 GPR17Q13304 367 aa10.12□□□□□ -0.79
SYNE2-224ENST00000557024 USP39Q53GS9 565 aaKnown RBP10.12□□□□□ -0.79
SYNE2-224ENST00000557024 USP37Q86T82 979 aa10.12□□□□□ -0.79
SYNE2-224ENST00000557024 PDZD3Q86UT5 571 aa10.12□□□□□ -0.79
SYNE2-224ENST00000557024 PROSER1Q86XN7 944 aa10.12□□□□□ -0.79
SYNE2-224ENST00000557024 PIGKQ92643 395 aa10.12□□□□□ -0.79
SYNE2-224ENST00000557024 EZH1Q92800 747 aaPredicted RBP10.12□□□□□ -0.79
SYNE2-224ENST00000557024 GCNAQ96QF7 691 aa10.12□□□□□ -0.79
SYNE2-224ENST00000557024 ACO2Q99798 780 aaKnown RBP10.12□□□□□ -0.79
SYNE2-224ENST00000557024 P2RY13Q9BPV8 354 aa10.12□□□□□ -0.79
SYNE2-224ENST00000557024 LPIN3Q9BQK8 851 aa10.12□□□□□ -0.79
SYNE2-224ENST00000557024 TCHPQ9BT92 498 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms