RNA–Protein interactions for RNA: ENST00000544983.1

SNHG1-221, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 870 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-221ENST00000544983 ZCWPW1Q9H0M4 648 aa12.55□□□□□ -0.4
SNHG1-221ENST00000544983 SMYD3Q9H7B4 428 aa12.55□□□□□ -0.4
SNHG1-221ENST00000544983 AFF4Q9UHB7 1163 aaKnown RBP12.55□□□□□ -0.4
SNHG1-221ENST00000544983 KIAA1257Q9ULG3 409 aa12.55□□□□□ -0.4
SNHG1-221ENST00000544983 POLIQ9UNA4 740 aa12.55□□□□□ -0.4
SNHG1-221ENST00000544983 CILPO75339 1184 aa12.54□□□□□ -0.4
SNHG1-221ENST00000544983 ABLIM3O94929 683 aa12.54□□□□□ -0.4
SNHG1-221ENST00000544983 WEE2P0C1S8 567 aa12.54□□□□□ -0.4
SNHG1-221ENST00000544983 CPB1P15086 417 aa12.54□□□□□ -0.4
SNHG1-221ENST00000544983 ATF2P15336 505 aa12.54□□□□□ -0.4
SNHG1-221ENST00000544983 SLC9A1P19634 815 aa12.54□□□□□ -0.4
SNHG1-221ENST00000544983 NRIP1P48552 1158 aa12.54□□□□□ -0.4
SNHG1-221ENST00000544983 CLCN4P51793 760 aa12.54□□□□□ -0.4
SNHG1-221ENST00000544983 COL19A1Q14993 1142 aa12.54□□□□□ -0.4
SNHG1-221ENST00000544983 NR1I3Q14994 352 aa12.54□□□□□ -0.4
SNHG1-221ENST00000544983 INTS6LQ5JSJ4 861 aaKnown RBP12.54□□□□□ -0.4
SNHG1-221ENST00000544983 LILRA6Q6PI73 481 aa12.54□□□□□ -0.4
SNHG1-221ENST00000544983 SCARA5Q6ZMJ2 495 aa12.54□□□□□ -0.4
SNHG1-221ENST00000544983 C4orf50Q6ZRC1 276 aa12.54□□□□□ -0.4
SNHG1-221ENST00000544983 CCDC149Q6ZUS6 474 aa12.54□□□□□ -0.4
SNHG1-221ENST00000544983 FMNL3Q8IVF7 1028 aa12.54□□□□□ -0.4
SNHG1-221ENST00000544983 RNF214Q8ND24 703 aa12.54□□□□□ -0.4
SNHG1-221ENST00000544983 SPPL2BQ8TCT7 592 aa12.54□□□□□ -0.4
SNHG1-221ENST00000544983 CASP10Q92851 521 aa12.54□□□□□ -0.4
SNHG1-221ENST00000544983 FUBP3Q96I24 572 aaKnown RBP eCLIP12.54□□□□□ -0.4
SNHG1-221ENST00000544983 RTP3Q9BQQ7 232 aa12.54□□□□□ -0.4
SNHG1-221ENST00000544983 MRPL45Q9BRJ2 306 aaKnown RBP12.54□□□□□ -0.4
SNHG1-221ENST00000544983 NT5C1AQ9BXI3 368 aa12.54□□□□□ -0.4
SNHG1-221ENST00000544983 ABCB6Q9NP58 842 aa12.54□□□□□ -0.4
SNHG1-221ENST00000544983 UBE2TQ9NPD8 197 aaPredicted RBP12.54□□□□□ -0.4
SNHG1-221ENST00000544983 CISHQ9NSE2 258 aa12.54□□□□□ -0.4
SNHG1-221ENST00000544983 DZANK1Q9NVP4 752 aa12.54□□□□□ -0.4
SNHG1-221ENST00000544983 CDH23Q9H251 3354 aa12.53□□□□□ -0.4
SNHG1-221ENST00000544983 HOXB8P17481 243 aaPredicted RBP12.53□□□□□ -0.4
SNHG1-221ENST00000544983 ELF1P32519 619 aa12.53□□□□□ -0.4
SNHG1-221ENST00000544983 NDST1P52848 882 aa12.53□□□□□ -0.4
SNHG1-221ENST00000544983 CDH8P55286 799 aa12.53□□□□□ -0.4
SNHG1-221ENST00000544983 ROR1Q01973 937 aa12.53□□□□□ -0.4
SNHG1-221ENST00000544983 KCNMA1Q12791 1236 aa12.53□□□□□ -0.4
SNHG1-221ENST00000544983 HYAL1Q12794 435 aa12.53□□□□□ -0.4
SNHG1-221ENST00000544983 LRMPQ12912 555 aa12.53□□□□□ -0.4
SNHG1-221ENST00000544983 KCNC3Q14003 757 aa12.53□□□□□ -0.4
SNHG1-221ENST00000544983 SYCP1Q15431 976 aa12.53□□□□□ -0.4
SNHG1-221ENST00000544983 KLHDC7AQ5VTJ3 777 aa12.53□□□□□ -0.4
SNHG1-221ENST00000544983 PHLDB3Q6NSJ2 640 aa12.53□□□□□ -0.4
SNHG1-221ENST00000544983 FAM171BQ6P995 826 aa12.53□□□□□ -0.4
SNHG1-221ENST00000544983 SARM1Q6SZW1 724 aa12.53□□□□□ -0.4
SNHG1-221ENST00000544983 CYP26C1Q6V0L0 522 aa12.53□□□□□ -0.4
SNHG1-221ENST00000544983 B3GALNT2Q8NCR0 500 aa12.53□□□□□ -0.4
SNHG1-221ENST00000544983 NEK11Q8NG66 645 aa12.53□□□□□ -0.4
SNHG1-221ENST00000544983 OR10T2Q8NGX3 314 aa12.53□□□□□ -0.4
SNHG1-221ENST00000544983 SLC22A17Q8WUG5 538 aa12.53□□□□□ -0.4
SNHG1-221ENST00000544983 CEP295NLQ96MC4 621 aa12.53□□□□□ -0.4
SNHG1-221ENST00000544983 SYT15Q9BQS2 421 aa12.53□□□□□ -0.4
SNHG1-221ENST00000544983 CNTN6Q9UQ52 1028 aa12.53□□□□□ -0.4
SNHG1-221ENST00000544983 SIK3Q9Y2K2 1263 aa12.53□□□□□ -0.4
SNHG1-221ENST00000544983 TSC2P49815 1807 aa12.53□□□□□ -0.4
SNHG1-221ENST00000544983 TGM5O43548 720 aa12.52□□□□□ -0.41
SNHG1-221ENST00000544983 LRRN2O75325 713 aa12.52□□□□□ -0.41
SNHG1-221ENST00000544983 PAEPP09466 180 aa12.52□□□□□ -0.41
SNHG1-221ENST00000544983 PDGFRBP09619 1106 aa12.52□□□□□ -0.41
SNHG1-221ENST00000544983 UCHL3P15374 230 aa12.52□□□□□ -0.41
SNHG1-221ENST00000544983 PTPN1P18031 435 aaKnown RBP12.52□□□□□ -0.41
SNHG1-221ENST00000544983 RPL17P18621 184 aaKnown RBP12.52□□□□□ -0.41
SNHG1-221ENST00000544983 LMO2P25791 158 aa12.52□□□□□ -0.41
SNHG1-221ENST00000544983 HOXA9P31269 272 aa12.52□□□□□ -0.41
SNHG1-221ENST00000544983 TUFMP49411 452 aaKnown RBP12.52□□□□□ -0.41
SNHG1-221ENST00000544983 ADAM15Q13444 863 aa12.52□□□□□ -0.41
SNHG1-221ENST00000544983 CTC1Q2NKJ3 1217 aa12.52□□□□□ -0.41
SNHG1-221ENST00000544983 CFAP221Q4G0U5 840 aa12.52□□□□□ -0.41
SNHG1-221ENST00000544983 LIN9Q5TKA1 542 aa12.52□□□□□ -0.41
SNHG1-221ENST00000544983 RSPO2Q6UXX9 243 aaPredicted RBP12.52□□□□□ -0.41
SNHG1-221ENST00000544983 ADGRD2Q7Z7M1 963 aa12.52□□□□□ -0.41
SNHG1-221ENST00000544983 RBM23Q86U06 439 aaKnown RBP12.52□□□□□ -0.41
SNHG1-221ENST00000544983 OSTM1Q86WC4 334 aa12.52□□□□□ -0.41
SNHG1-221ENST00000544983 PALB2Q86YC2 1186 aa12.52□□□□□ -0.41
SNHG1-221ENST00000544983 TCEAL8Q8IYN2 117 aa12.52□□□□□ -0.41
SNHG1-221ENST00000544983 MYCBPAPQ8TBZ2 947 aa12.52□□□□□ -0.41
SNHG1-221ENST00000544983 PABPC5Q96DU9 382 aaKnown RBP12.52□□□□□ -0.41
SNHG1-221ENST00000544983 TMEM176AQ96HP8 235 aa12.52□□□□□ -0.41
SNHG1-221ENST00000544983 PCMTD1Q96MG8 357 aaPredicted RBP12.52□□□□□ -0.41
SNHG1-221ENST00000544983 NAP1L5Q96NT1 182 aaPredicted RBP12.52□□□□□ -0.41
SNHG1-221ENST00000544983 NUP58Q9BVL2 599 aa12.52□□□□□ -0.41
SNHG1-221ENST00000544983 LSM14BQ9BX40 385 aaKnown RBP12.52□□□□□ -0.41
SNHG1-221ENST00000544983 STK33Q9BYT3 514 aa12.52□□□□□ -0.41
SNHG1-221ENST00000544983 RHOBTB2Q9BYZ6 727 aa12.52□□□□□ -0.41
SNHG1-221ENST00000544983 EDEM3Q9BZQ6 932 aa12.52□□□□□ -0.41
SNHG1-221ENST00000544983 SDCBP2Q9H190 292 aa12.52□□□□□ -0.41
SNHG1-221ENST00000544983 SIX2Q9NPC8 291 aa12.52□□□□□ -0.41
SNHG1-221ENST00000544983 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.52□□□□□ -0.41
SNHG1-221ENST00000544983 FBXW11Q9UKB1 542 aa12.52□□□□□ -0.41
SNHG1-221ENST00000544983 PCDHB5Q9Y5E4 795 aa12.52□□□□□ -0.41
SNHG1-221ENST00000544983 PCDHGC5Q9Y5F6 944 aa12.52□□□□□ -0.41
SNHG1-221ENST00000544983 HCFC2Q9Y5Z7 792 aa12.52□□□□□ -0.41
SNHG1-221ENST00000544983 ATP8B3O60423 1300 aa12.52□□□□□ -0.41
SNHG1-221ENST00000544983 WDR27A2RRH5 827 aa12.51□□□□□ -0.41
SNHG1-221ENST00000544983 PER2O15055 1255 aa12.51□□□□□ -0.41
SNHG1-221ENST00000544983 ADAM12O43184 909 aa12.51□□□□□ -0.41
SNHG1-221ENST00000544983 CSPG5O95196 566 aa12.51□□□□□ -0.41
SNHG1-221ENST00000544983 PAPLNO95428 1278 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms