RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 TMEM130Q8N3G9 435 aa14.58□□□□□ -0.08
RTN3-210ENST00000540798 ATL2Q8NHH9 583 aa14.58□□□□□ -0.08
RTN3-210ENST00000540798 ATG4AQ8WYN0 398 aa14.58□□□□□ -0.08
RTN3-210ENST00000540798 TLCD1Q96CP7 247 aa14.58□□□□□ -0.08
RTN3-210ENST00000540798 MCEEQ96PE7 176 aa14.58□□□□□ -0.08
RTN3-210ENST00000540798 NXF1Q9UBU9 619 aaKnown RBP14.58□□□□□ -0.08
RTN3-210ENST00000540798 SRRM3A6NNA2 597 aaPredicted RBP14.58□□□□□ -0.08
RTN3-210ENST00000540798 TCF4P15884 667 aa14.58□□□□□ -0.08
RTN3-210ENST00000540798 ITIH2P19823 946 aa14.58□□□□□ -0.08
RTN3-210ENST00000540798 LACTBP83111 547 aaPredicted RBP14.58□□□□□ -0.08
RTN3-210ENST00000540798 WDR72Q3MJ13 1102 aa14.58□□□□□ -0.08
RTN3-210ENST00000540798 PTPN20Q4JDL3 420 aa14.58□□□□□ -0.08
RTN3-210ENST00000540798 NPLOC4Q8TAT6 608 aa14.58□□□□□ -0.08
RTN3-210ENST00000540798 SLITRK1Q96PX8 696 aa14.58□□□□□ -0.08
RTN3-210ENST00000540798 SMYD3Q9H7B4 428 aa14.58□□□□□ -0.08
RTN3-210ENST00000540798 GBA2Q9HCG7 927 aaPredicted RBP14.58□□□□□ -0.08
RTN3-210ENST00000540798 CLEC11AQ9Y240 323 aa14.58□□□□□ -0.08
RTN3-210ENST00000540798 SLC15A5A6NIM6 579 aa14.57□□□□□ -0.08
RTN3-210ENST00000540798 ITGBL1O95965 494 aaPredicted RBP14.57□□□□□ -0.08
RTN3-210ENST00000540798 COPS2P61201 443 aa14.57□□□□□ -0.08
RTN3-210ENST00000540798 INCA1Q0VD86 236 aa14.57□□□□□ -0.08
RTN3-210ENST00000540798 FOXR1Q6PIV2 292 aa14.57□□□□□ -0.08
RTN3-210ENST00000540798 DPP9Q86TI2 863 aa14.57□□□□□ -0.08
RTN3-210ENST00000540798 RBM41Q96IZ5 413 aaKnown RBP14.57□□□□□ -0.08
RTN3-210ENST00000540798 TWNKQ96RR1 684 aa14.57□□□□□ -0.08
RTN3-210ENST00000540798 ELOVL4Q9GZR5 314 aa14.57□□□□□ -0.08
RTN3-210ENST00000540798 ADAMTS10Q9H324 1103 aa14.57□□□□□ -0.08
RTN3-210ENST00000540798 AAASQ9NRG9 546 aa14.57□□□□□ -0.08
RTN3-210ENST00000540798 CWC15Q9P013 229 aaKnown RBP14.57□□□□□ -0.08
RTN3-210ENST00000540798 BCCIPQ9P287 314 aaKnown RBP eCLIP14.57□□□□□ -0.08
RTN3-210ENST00000540798 ITGA11Q9UKX5 1188 aa14.57□□□□□ -0.08
RTN3-210ENST00000540798 CEP83Q9Y592 693 aa14.57□□□□□ -0.08
RTN3-210ENST00000540798 KRT19P08727 400 aa14.57□□□□□ -0.08
RTN3-210ENST00000540798 GRM5P41594 1212 aa14.57□□□□□ -0.08
RTN3-210ENST00000540798 GABRB2P47870 512 aa14.57□□□□□ -0.08
RTN3-210ENST00000540798 NFX1Q12986 1120 aaKnown RBP14.57□□□□□ -0.08
RTN3-210ENST00000540798 MKRN3Q13064 507 aaKnown RBP14.57□□□□□ -0.08
RTN3-210ENST00000540798 PPP1R7Q15435 360 aa14.57□□□□□ -0.08
RTN3-210ENST00000540798 DGKDQ16760 1214 aa14.57□□□□□ -0.08
RTN3-210ENST00000540798 DNAJC21Q5F1R6 531 aaKnown RBP14.57□□□□□ -0.08
RTN3-210ENST00000540798 DRICH1Q6PGQ1 229 aaPredicted RBP14.57□□□□□ -0.08
RTN3-210ENST00000540798 OR6J1Q8NGC5 347 aa14.57□□□□□ -0.08
RTN3-210ENST00000540798 FNIP1Q8TF40 1166 aa14.57□□□□□ -0.08
RTN3-210ENST00000540798 SLC12A6Q9UHW9 1150 aa14.57□□□□□ -0.08
RTN3-210ENST00000540798 USTQ9Y2C2 406 aa14.57□□□□□ -0.08
RTN3-210ENST00000540798 SIGLEC16A6NMB1 481 aa14.57□□□□□ -0.08
RTN3-210ENST00000540798 F8VP50 259 aa14.57□□□□□ -0.08
RTN3-210ENST00000540798 SHBGP04278 402 aa14.57□□□□□ -0.08
RTN3-210ENST00000540798 CDH8P55286 799 aa14.57□□□□□ -0.08
RTN3-210ENST00000540798 SNX1Q13596 522 aa14.57□□□□□ -0.08
RTN3-210ENST00000540798 TMEM132DQ14C87 1099 aa14.57□□□□□ -0.08
RTN3-210ENST00000540798 LLGL1Q15334 1064 aa14.57□□□□□ -0.08
RTN3-210ENST00000540798 TRIP11Q15643 1979 aa14.57□□□□□ -0.08
RTN3-210ENST00000540798 CCDC50Q8IVM0 306 aa14.57□□□□□ -0.08
RTN3-210ENST00000540798 NLRP7Q8WX94 980 aa14.57□□□□□ -0.08
RTN3-210ENST00000540798 SNF8Q96H20 258 aa14.57□□□□□ -0.08
RTN3-210ENST00000540798 HMGXB4Q9UGU5 601 aa14.57□□□□□ -0.08
RTN3-210ENST00000540798 PTPN11Q06124 597 aaPredicted RBP14.56□□□□□ -0.08
RTN3-210ENST00000540798 PDCLQ13371 301 aa14.56□□□□□ -0.08
RTN3-210ENST00000540798 POLNQ7Z5Q5 900 aa14.56□□□□□ -0.08
RTN3-210ENST00000540798 TMEM176AQ96HP8 235 aa14.56□□□□□ -0.08
RTN3-210ENST00000540798 PPP1R16BQ96T49 567 aa14.56□□□□□ -0.08
RTN3-210ENST00000540798 HEMGNQ9BXL5 484 aa14.56□□□□□ -0.08
RTN3-210ENST00000540798 SEMA4AQ9H3S1 761 aa14.56□□□□□ -0.08
RTN3-210ENST00000540798 RIPK2O43353 540 aa14.56□□□□□ -0.08
RTN3-210ENST00000540798 POLR2BP30876 1174 aaKnown RBP14.56□□□□□ -0.08
RTN3-210ENST00000540798 MDH1P40925 334 aaKnown RBP14.56□□□□□ -0.08
RTN3-210ENST00000540798 ATP1A2P50993 1020 aa14.56□□□□□ -0.08
RTN3-210ENST00000540798 CAV1Q03135 178 aa14.56□□□□□ -0.08
RTN3-210ENST00000540798 ATP13A4Q4VNC1 1196 aa14.56□□□□□ -0.08
RTN3-210ENST00000540798 CYP4A22Q5TCH4 519 aa14.56□□□□□ -0.08
RTN3-210ENST00000540798 DENND2CQ68D51 928 aa14.56□□□□□ -0.08
RTN3-210ENST00000540798 ARFGAP2Q8N6H7 521 aa14.56□□□□□ -0.08
RTN3-210ENST00000540798 PGM2Q96G03 612 aa14.56□□□□□ -0.08
RTN3-210ENST00000540798 DDX56Q9NY93 547 aaKnown RBP14.56□□□□□ -0.08
RTN3-210ENST00000540798 WDR3Q9UNX4 943 aaKnown RBP eCLIP14.56□□□□□ -0.08
RTN3-210ENST00000540798 RRN3P2A6NIE6 340 aa14.55□□□□□ -0.08
RTN3-210ENST00000540798 A6NJR5 290 aa14.55□□□□□ -0.08
RTN3-210ENST00000540798 GAS8O95995 478 aa14.55□□□□□ -0.08
RTN3-210ENST00000540798 KLRC2P26717 231 aa14.55□□□□□ -0.08
RTN3-210ENST00000540798 ADCY2Q08462 1091 aa14.55□□□□□ -0.08
RTN3-210ENST00000540798 DCAF4L1Q3SXM0 396 aa14.55□□□□□ -0.08
RTN3-210ENST00000540798 MORN1Q5T089 497 aa14.55□□□□□ -0.08
RTN3-210ENST00000540798 UBAP2Q5T6F2 1119 aaKnown RBP14.55□□□□□ -0.08
RTN3-210ENST00000540798 DCUN1D2Q6PH85 259 aa14.55□□□□□ -0.08
RTN3-210ENST00000540798 XYLT1Q86Y38 959 aa14.55□□□□□ -0.08
RTN3-210ENST00000540798 ACAP3Q96P50 834 aa14.55□□□□□ -0.08
RTN3-210ENST00000540798 YY1AP1Q9H869 796 aa14.55□□□□□ -0.08
RTN3-210ENST00000540798 WDR35Q9P2L0 1181 aa14.55□□□□□ -0.08
RTN3-210ENST00000540798 GNEQ9Y223 722 aaKnown RBP14.55□□□□□ -0.08
RTN3-210ENST00000540798 DERAQ9Y315 318 aa14.55□□□□□ -0.08
RTN3-210ENST00000540798 C3orf70A6NLC5 250 aaPredicted RBP14.55□□□□□ -0.08
RTN3-210ENST00000540798 GPR32O75388 356 aa14.55□□□□□ -0.08
RTN3-210ENST00000540798 P4HA1P13674 534 aa14.55□□□□□ -0.08
RTN3-210ENST00000540798 SLC25A11Q02978 314 aaKnown RBP14.55□□□□□ -0.08
RTN3-210ENST00000540798 CALCOCO2Q13137 446 aa14.55□□□□□ -0.08
RTN3-210ENST00000540798 SLC29A2Q14542 456 aa14.55□□□□□ -0.08
RTN3-210ENST00000540798 KRT71Q3SY84 523 aa14.55□□□□□ -0.08
RTN3-210ENST00000540798 TNFAIP8L3Q5GJ75 292 aa14.55□□□□□ -0.08
RTN3-210ENST00000540798 MFSD7Q6UXD7 560 aa14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms