RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 SCAMP4Q969E2 229 aa4.55□□□□□ -1.68
CCDC88A-212ENST00000474059 PDGFCQ9NRA1 345 aa4.55□□□□□ -1.68
CCDC88A-212ENST00000474059 CYP2D7A0A087X1C5 515 aa4.54□□□□□ -1.68
CCDC88A-212ENST00000474059 PPM1DO15297 605 aa4.54□□□□□ -1.68
CCDC88A-212ENST00000474059 NDUFS2O75306 463 aa4.54□□□□□ -1.68
CCDC88A-212ENST00000474059 SOX5P35711 763 aa4.54□□□□□ -1.68
CCDC88A-212ENST00000474059 LIPAP38571 399 aa4.54□□□□□ -1.68
CCDC88A-212ENST00000474059 ZNF134P52741 427 aa4.54□□□□□ -1.68
CCDC88A-212ENST00000474059 CYP4F2P78329 520 aa4.54□□□□□ -1.68
CCDC88A-212ENST00000474059 SP2Q02086 613 aa4.54□□□□□ -1.68
CCDC88A-212ENST00000474059 LAMB3Q13751 1172 aa4.54□□□□□ -1.68
CCDC88A-212ENST00000474059 RAB39AQ14964 217 aa4.54□□□□□ -1.68
CCDC88A-212ENST00000474059 CCDC93Q567U6 631 aa4.54□□□□□ -1.68
CCDC88A-212ENST00000474059 AARS2Q5JTZ9 985 aaKnown RBP4.54□□□□□ -1.68
CCDC88A-212ENST00000474059 PPP1R32Q7Z5V6 425 aa4.54□□□□□ -1.68
CCDC88A-212ENST00000474059 GALNT16Q8N428 558 aa4.54□□□□□ -1.68
CCDC88A-212ENST00000474059 NIPSNAP3AQ9UFN0 247 aaPredicted RBP4.54□□□□□ -1.68
CCDC88A-212ENST00000474059 KCNU1A8MYU2 1149 aa4.53□□□□□ -1.68
CCDC88A-212ENST00000474059 INSIG1O15503 277 aa4.53□□□□□ -1.68
CCDC88A-212ENST00000474059 TRIAP1O43715 76 aa4.53□□□□□ -1.68
CCDC88A-212ENST00000474059 BCAR3O75815 825 aa4.53□□□□□ -1.68
CCDC88A-212ENST00000474059 CHRM3P20309 590 aa4.53□□□□□ -1.68
CCDC88A-212ENST00000474059 ARHGAP25P42331 645 aa4.53□□□□□ -1.68
CCDC88A-212ENST00000474059 MASP1P48740 699 aa4.53□□□□□ -1.68
CCDC88A-212ENST00000474059 KLF1Q13351 362 aaPredicted RBP4.53□□□□□ -1.68
CCDC88A-212ENST00000474059 SNAPC2Q13487 334 aa4.53□□□□□ -1.68
CCDC88A-212ENST00000474059 Q4G0T1 1027 aa4.53□□□□□ -1.68
CCDC88A-212ENST00000474059 PLAC9Q5JTB6 97 aa4.53□□□□□ -1.68
CCDC88A-212ENST00000474059 ANKRD16Q6P6B7 361 aa4.53□□□□□ -1.68
CCDC88A-212ENST00000474059 MIGA2Q7L4E1 593 aa4.53□□□□□ -1.68
CCDC88A-212ENST00000474059 SPATS2Q86XZ4 545 aaKnown RBP4.53□□□□□ -1.68
CCDC88A-212ENST00000474059 PDSS2Q86YH6 399 aa4.53□□□□□ -1.68
CCDC88A-212ENST00000474059 NSUN6Q8TEA1 469 aaKnown RBP4.53□□□□□ -1.68
CCDC88A-212ENST00000474059 FAM136AQ96C01 138 aa4.53□□□□□ -1.68
CCDC88A-212ENST00000474059 CLPTM1LQ96KA5 538 aa4.53□□□□□ -1.68
CCDC88A-212ENST00000474059 TINAGL1Q9GZM7 467 aaPredicted RBP4.53□□□□□ -1.68
CCDC88A-212ENST00000474059 GPR35Q9HC97 309 aa4.53□□□□□ -1.68
CCDC88A-212ENST00000474059 TUBA8Q9NY65 449 aaPredicted RBP4.53□□□□□ -1.68
CCDC88A-212ENST00000474059 CALCOCO1Q9P1Z2 691 aa4.53□□□□□ -1.68
CCDC88A-212ENST00000474059 AFG3L2Q9Y4W6 797 aa4.53□□□□□ -1.68
CCDC88A-212ENST00000474059 UTP18Q9Y5J1 556 aaKnown RBP eCLIP4.53□□□□□ -1.68
CCDC88A-212ENST00000474059 CCDC187A0A096LP49 1063 aa4.52□□□□□ -1.69
CCDC88A-212ENST00000474059 ZNF785A8K8V0 405 aa4.52□□□□□ -1.69
CCDC88A-212ENST00000474059 E5RJQ4 531 aa4.52□□□□□ -1.69
CCDC88A-212ENST00000474059 PCDHGA12O60330 932 aa4.52□□□□□ -1.69
CCDC88A-212ENST00000474059 FAM163BP0C2L3 166 aa4.52□□□□□ -1.69
CCDC88A-212ENST00000474059 PSMC1P62191 440 aaKnown RBP4.52□□□□□ -1.69
CCDC88A-212ENST00000474059 DSC2Q02487 901 aa4.52□□□□□ -1.69
CCDC88A-212ENST00000474059 HABP2Q14520 560 aaPredicted RBP4.52□□□□□ -1.69
CCDC88A-212ENST00000474059 RABEP1Q15276 862 aa4.52□□□□□ -1.69
CCDC88A-212ENST00000474059 ZDHHC17Q8IUH5 632 aa4.52□□□□□ -1.69
CCDC88A-212ENST00000474059 SPATA3Q8NHX4 192 aa4.52□□□□□ -1.69
CCDC88A-212ENST00000474059 CHAC2Q8WUX2 184 aa4.52□□□□□ -1.69
CCDC88A-212ENST00000474059 HDAC10Q969S8 669 aa4.52□□□□□ -1.69
CCDC88A-212ENST00000474059 RITA1Q96K30 269 aa4.52□□□□□ -1.69
CCDC88A-212ENST00000474059 C5orf34Q96MH7 638 aa4.52□□□□□ -1.69
CCDC88A-212ENST00000474059 TMEM79Q9BSE2 394 aa4.52□□□□□ -1.69
CCDC88A-212ENST00000474059 SERPINB13Q9UIV8 391 aa4.52□□□□□ -1.69
CCDC88A-212ENST00000474059 PCDHGA9Q9Y5G4 932 aaKnown RBP4.52□□□□□ -1.69
CCDC88A-212ENST00000474059 PCDHGA8Q9Y5G5 932 aa4.52□□□□□ -1.69
CCDC88A-212ENST00000474059 PCDHGA7Q9Y5G6 932 aa4.52□□□□□ -1.69
CCDC88A-212ENST00000474059 PCDHGA6Q9Y5G7 932 aa4.52□□□□□ -1.69
CCDC88A-212ENST00000474059 PCDHGA3Q9Y5H0 932 aa4.52□□□□□ -1.69
CCDC88A-212ENST00000474059 CNTNAP2Q9UHC6 1331 aa4.51□□□□□ -1.69
CCDC88A-212ENST00000474059 CCDC154A6NI56 674 aa4.51□□□□□ -1.69
CCDC88A-212ENST00000474059 IGSF3O75054 1194 aa4.51□□□□□ -1.69
CCDC88A-212ENST00000474059 DNAJB5O75953 348 aa4.51□□□□□ -1.69
CCDC88A-212ENST00000474059 GJB1P08034 283 aa4.51□□□□□ -1.69
CCDC88A-212ENST00000474059 MALP21145 153 aa4.51□□□□□ -1.69
CCDC88A-212ENST00000474059 CD6P30203 668 aa4.51□□□□□ -1.69
CCDC88A-212ENST00000474059 ZNF135P52742 658 aaPredicted RBP4.51□□□□□ -1.69
CCDC88A-212ENST00000474059 SLC29A4Q7RTT9 530 aa4.51□□□□□ -1.69
CCDC88A-212ENST00000474059 IRF2BP2Q7Z5L9 587 aa4.51□□□□□ -1.69
CCDC88A-212ENST00000474059 NRACQ8N912 160 aa4.51□□□□□ -1.69
CCDC88A-212ENST00000474059 ABCF1Q8NE71 845 aaKnown RBP eCLIP4.51□□□□□ -1.69
CCDC88A-212ENST00000474059 ATRIPQ8WXE1 791 aa4.51□□□□□ -1.69
CCDC88A-212ENST00000474059 VRK1Q99986 396 aaPredicted RBP4.51□□□□□ -1.69
CCDC88A-212ENST00000474059 FZD9O00144 591 aa4.5□□□□□ -1.69
CCDC88A-212ENST00000474059 VPS4BO75351 444 aa4.5□□□□□ -1.69
CCDC88A-212ENST00000474059 NXPH3O95157 252 aa4.5□□□□□ -1.69
CCDC88A-212ENST00000474059 KIF20AO95235 890 aa4.5□□□□□ -1.69
CCDC88A-212ENST00000474059 IL6RP08887 468 aaPredicted RBP4.5□□□□□ -1.69
CCDC88A-212ENST00000474059 CBSLP0DN79 551 aa4.5□□□□□ -1.69
CCDC88A-212ENST00000474059 NDUFB7P17568 137 aa4.5□□□□□ -1.69
CCDC88A-212ENST00000474059 TKTP29401 623 aaKnown RBP4.5□□□□□ -1.69
CCDC88A-212ENST00000474059 CBSP35520 551 aa4.5□□□□□ -1.69
CCDC88A-212ENST00000474059 IARSP41252 1262 aaKnown RBP4.5□□□□□ -1.69
CCDC88A-212ENST00000474059 FXR1P51114 621 aaKnown RBP eCLIP4.5□□□□□ -1.69
CCDC88A-212ENST00000474059 CLCN2P51788 898 aa4.5□□□□□ -1.69
CCDC88A-212ENST00000474059 ZNF618Q5T7W0 954 aa4.5□□□□□ -1.69
CCDC88A-212ENST00000474059 DTX2Q86UW9 622 aa4.5□□□□□ -1.69
CCDC88A-212ENST00000474059 FANCBQ8NB91 859 aa4.5□□□□□ -1.69
CCDC88A-212ENST00000474059 WDR66Q8TBY9 1149 aa4.5□□□□□ -1.69
CCDC88A-212ENST00000474059 ADAMTS15Q8TE58 950 aa4.5□□□□□ -1.69
CCDC88A-212ENST00000474059 HMCESQ96FZ2 354 aa4.5□□□□□ -1.69
CCDC88A-212ENST00000474059 EBF3Q9H4W6 596 aa4.5□□□□□ -1.69
CCDC88A-212ENST00000474059 DUSP22Q9NRW4 184 aa4.5□□□□□ -1.69
CCDC88A-212ENST00000474059 RLIMQ9NVW2 624 aa4.5□□□□□ -1.69
CCDC88A-212ENST00000474059 SIDT1Q9NXL6 827 aaKnown RBP4.5□□□□□ -1.69
CCDC88A-212ENST00000474059 USP35Q9P2H5 1018 aa4.5□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms