RNA–Protein interactions for RNA: ENST00000469778.1

SPTLC1-204, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

TSL 2

Gene SPTLC1, Length 490 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-204ENST00000469778 HNRNPA1P09651 372 aaKnown RBP eCLIP13.48□□□□□ -0.25
SPTLC1-204ENST00000469778 CPB1P15086 417 aa13.48□□□□□ -0.25
SPTLC1-204ENST00000469778 HOXA9P31269 272 aa13.48□□□□□ -0.25
SPTLC1-204ENST00000469778 ROR1Q01973 937 aa13.48□□□□□ -0.25
SPTLC1-204ENST00000469778 PLD1Q13393 1074 aa13.48□□□□□ -0.25
SPTLC1-204ENST00000469778 HSP90AA4PQ58FG1 418 aa13.48□□□□□ -0.25
SPTLC1-204ENST00000469778 LIN9Q5TKA1 542 aa13.48□□□□□ -0.25
SPTLC1-204ENST00000469778 SCARA3Q6AZY7 606 aa13.48□□□□□ -0.25
SPTLC1-204ENST00000469778 C4orf50Q6ZRC1 276 aa13.48□□□□□ -0.25
SPTLC1-204ENST00000469778 ADGRD2Q7Z7M1 963 aa13.48□□□□□ -0.25
SPTLC1-204ENST00000469778 RBM23Q86U06 439 aaKnown RBP13.48□□□□□ -0.25
SPTLC1-204ENST00000469778 TMEM130Q8N3G9 435 aa13.48□□□□□ -0.25
SPTLC1-204ENST00000469778 CMASQ8NFW8 434 aaPredicted RBP13.48□□□□□ -0.25
SPTLC1-204ENST00000469778 MYCBPAPQ8TBZ2 947 aa13.48□□□□□ -0.25
SPTLC1-204ENST00000469778 SPPL2BQ8TCT7 592 aa13.48□□□□□ -0.25
SPTLC1-204ENST00000469778 ERGIC2Q96RQ1 377 aa13.48□□□□□ -0.25
SPTLC1-204ENST00000469778 MRPL45Q9BRJ2 306 aaKnown RBP13.48□□□□□ -0.25
SPTLC1-204ENST00000469778 NT5C1AQ9BXI3 368 aa13.48□□□□□ -0.25
SPTLC1-204ENST00000469778 APOBEC3GQ9HC16 384 aaKnown RBP13.48□□□□□ -0.25
SPTLC1-204ENST00000469778 RTN4Q9NQC3 1192 aaKnown RBP13.48□□□□□ -0.25
SPTLC1-204ENST00000469778 ZDHHC7Q9NXF8 308 aa13.48□□□□□ -0.25
SPTLC1-204ENST00000469778 TAB2Q9NYJ8 693 aa13.48□□□□□ -0.25
SPTLC1-204ENST00000469778 APEX2Q9UBZ4 518 aa13.48□□□□□ -0.25
SPTLC1-204ENST00000469778 HCFC2Q9Y5Z7 792 aa13.48□□□□□ -0.25
SPTLC1-204ENST00000469778 PRRC2BQ5JSZ5 2229 aaKnown RBP13.47□□□□□ -0.25
SPTLC1-204ENST00000469778 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.47□□□□□ -0.25
SPTLC1-204ENST00000469778 A0A1B0GTH6 734 aa13.47□□□□□ -0.25
SPTLC1-204ENST00000469778 PER2O15055 1255 aa13.47□□□□□ -0.25
SPTLC1-204ENST00000469778 WEE2P0C1S8 567 aa13.47□□□□□ -0.25
SPTLC1-204ENST00000469778 PTPN1P18031 435 aaKnown RBP13.47□□□□□ -0.25
SPTLC1-204ENST00000469778 UBXN1Q04323 297 aa13.47□□□□□ -0.25
SPTLC1-204ENST00000469778 ITIH3Q06033 890 aa13.47□□□□□ -0.25
SPTLC1-204ENST00000469778 AAK1Q2M2I8 961 aa13.47□□□□□ -0.25
SPTLC1-204ENST00000469778 PUS10Q3MIT2 529 aaKnown RBP13.47□□□□□ -0.25
SPTLC1-204ENST00000469778 CFAP221Q4G0U5 840 aa13.47□□□□□ -0.25
SPTLC1-204ENST00000469778 SPOPLQ6IQ16 392 aa13.47□□□□□ -0.25
SPTLC1-204ENST00000469778 RSPO2Q6UXX9 243 aaPredicted RBP13.47□□□□□ -0.25
SPTLC1-204ENST00000469778 APTXQ7Z2E3 356 aaKnown RBP13.47□□□□□ -0.25
SPTLC1-204ENST00000469778 PALB2Q86YC2 1186 aa13.47□□□□□ -0.25
SPTLC1-204ENST00000469778 FMNL3Q8IVF7 1028 aa13.47□□□□□ -0.25
SPTLC1-204ENST00000469778 PPM1KQ8N3J5 372 aa13.47□□□□□ -0.25
SPTLC1-204ENST00000469778 KREMEN2Q8NCW0 462 aa13.47□□□□□ -0.25
SPTLC1-204ENST00000469778 OR10T2Q8NGX3 314 aa13.47□□□□□ -0.25
SPTLC1-204ENST00000469778 TATDN2Q93075 761 aa13.47□□□□□ -0.25
SPTLC1-204ENST00000469778 HLA-CQ95604 372 aa13.47□□□□□ -0.25
SPTLC1-204ENST00000469778 IQCDQ96DY2 449 aa13.47□□□□□ -0.25
SPTLC1-204ENST00000469778 RTP3Q9BQQ7 232 aa13.47□□□□□ -0.25
SPTLC1-204ENST00000469778 IGFLR1Q9H665 355 aa13.47□□□□□ -0.25
SPTLC1-204ENST00000469778 SMYD3Q9H7B4 428 aa13.47□□□□□ -0.25
SPTLC1-204ENST00000469778 CISHQ9NSE2 258 aa13.47□□□□□ -0.25
SPTLC1-204ENST00000469778 FBXW11Q9UKB1 542 aa13.47□□□□□ -0.25
SPTLC1-204ENST00000469778 POLIQ9UNA4 740 aa13.47□□□□□ -0.25
SPTLC1-204ENST00000469778 CNTN6Q9UQ52 1028 aa13.47□□□□□ -0.25
SPTLC1-204ENST00000469778 PCDHB5Q9Y5E4 795 aa13.47□□□□□ -0.25
SPTLC1-204ENST00000469778 ATP8B3O60423 1300 aa13.46□□□□□ -0.25
SPTLC1-204ENST00000469778 A0A1W2PQC6 194 aa13.46□□□□□ -0.25
SPTLC1-204ENST00000469778 WDR27A2RRH5 827 aa13.46□□□□□ -0.25
SPTLC1-204ENST00000469778 CILPO75339 1184 aa13.46□□□□□ -0.25
SPTLC1-204ENST00000469778 PAEPP09466 180 aa13.46□□□□□ -0.25
SPTLC1-204ENST00000469778 ATP1A3P13637 1013 aa13.46□□□□□ -0.25
SPTLC1-204ENST00000469778 RPL17P18621 184 aaKnown RBP13.46□□□□□ -0.25
SPTLC1-204ENST00000469778 SLC9A1P19634 815 aa13.46□□□□□ -0.25
SPTLC1-204ENST00000469778 LMO2P25791 158 aa13.46□□□□□ -0.25
SPTLC1-204ENST00000469778 MAGEA11P43364 429 aa13.46□□□□□ -0.25
SPTLC1-204ENST00000469778 CDH8P55286 799 aa13.46□□□□□ -0.25
SPTLC1-204ENST00000469778 PHLDB3Q6NSJ2 640 aa13.46□□□□□ -0.25
SPTLC1-204ENST00000469778 VSTM1Q6UX27 236 aa13.46□□□□□ -0.25
SPTLC1-204ENST00000469778 MICALL1Q8N3F8 863 aa13.46□□□□□ -0.25
SPTLC1-204ENST00000469778 B3GALNT2Q8NCR0 500 aa13.46□□□□□ -0.25
SPTLC1-204ENST00000469778 MAFAQ8NHW3 353 aaPredicted RBP13.46□□□□□ -0.25
SPTLC1-204ENST00000469778 PKMYT1Q99640 499 aa13.46□□□□□ -0.25
SPTLC1-204ENST00000469778 SYT15Q9BQS2 421 aa13.46□□□□□ -0.25
SPTLC1-204ENST00000469778 CRACR2AQ9BSW2 395 aa13.46□□□□□ -0.25
SPTLC1-204ENST00000469778 SFXN1Q9H9B4 322 aa13.46□□□□□ -0.25
SPTLC1-204ENST00000469778 UBE2TQ9NPD8 197 aaPredicted RBP13.46□□□□□ -0.25
SPTLC1-204ENST00000469778 FAM50BQ9Y247 325 aa13.46□□□□□ -0.25
SPTLC1-204ENST00000469778 ASB3Q9Y575 518 aa13.46□□□□□ -0.25
SPTLC1-204ENST00000469778 PCDHGC5Q9Y5F6 944 aa13.46□□□□□ -0.25
SPTLC1-204ENST00000469778 COL4A4P53420 1690 aaPredicted RBP13.45□□□□□ -0.26
SPTLC1-204ENST00000469778 PRRG1O14668 218 aa13.45□□□□□ -0.26
SPTLC1-204ENST00000469778 ADAM12O43184 909 aa13.45□□□□□ -0.26
SPTLC1-204ENST00000469778 CBFA2T2O43439 604 aa13.45□□□□□ -0.26
SPTLC1-204ENST00000469778 XYLBO75191 536 aa13.45□□□□□ -0.26
SPTLC1-204ENST00000469778 ZMYND10O75800 440 aa13.45□□□□□ -0.26
SPTLC1-204ENST00000469778 PDGFRBP09619 1106 aa13.45□□□□□ -0.26
SPTLC1-204ENST00000469778 ALDH1A3P47895 512 aa13.45□□□□□ -0.26
SPTLC1-204ENST00000469778 NDST1P52848 882 aa13.45□□□□□ -0.26
SPTLC1-204ENST00000469778 ARPP19P56211 112 aa13.45□□□□□ -0.26
SPTLC1-204ENST00000469778 UBASH3AP57075 661 aa13.45□□□□□ -0.26
SPTLC1-204ENST00000469778 BPIFB4P59827 614 aa13.45□□□□□ -0.26
SPTLC1-204ENST00000469778 RPL10AP62906 217 aaKnown RBP13.45□□□□□ -0.26
SPTLC1-204ENST00000469778 FANCCQ00597 558 aa13.45□□□□□ -0.26
SPTLC1-204ENST00000469778 ADCY1Q08828 1119 aa13.45□□□□□ -0.26
SPTLC1-204ENST00000469778 KCNMA1Q12791 1236 aa13.45□□□□□ -0.26
SPTLC1-204ENST00000469778 NR1I3Q14994 352 aa13.45□□□□□ -0.26
SPTLC1-204ENST00000469778 SKIV2LQ15477 1246 aaKnown RBP13.45□□□□□ -0.26
SPTLC1-204ENST00000469778 SLC39A12Q504Y0 691 aa13.45□□□□□ -0.26
SPTLC1-204ENST00000469778 KLHDC7AQ5VTJ3 777 aa13.45□□□□□ -0.26
SPTLC1-204ENST00000469778 CES5AQ6NT32 575 aa13.45□□□□□ -0.26
SPTLC1-204ENST00000469778 ANKRD54Q6NXT1 300 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms