RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 BFSP1Q12934 665 aa16.59■□□□□ 0.25
SKA3-204ENST00000462482 SIM2Q14190 667 aaPredicted RBP16.59■□□□□ 0.25
SKA3-204ENST00000462482 LPAL2Q16609 132 aa16.59■□□□□ 0.25
SKA3-204ENST00000462482 NFE2Q16621 373 aaPredicted RBP16.59■□□□□ 0.25
SKA3-204ENST00000462482 ITPRIPL2Q3MIP1 535 aa16.59■□□□□ 0.25
SKA3-204ENST00000462482 CCDC73Q6ZRK6 1079 aa16.59■□□□□ 0.25
SKA3-204ENST00000462482 ZFYVE19Q96K21 471 aa16.59■□□□□ 0.25
SKA3-204ENST00000462482 FAM213AQ9BRX8 229 aa16.59■□□□□ 0.25
SKA3-204ENST00000462482 DMDP11532 3685 aa16.59■□□□□ 0.25
SKA3-204ENST00000462482 RETP07949 1114 aa16.58■□□□□ 0.24
SKA3-204ENST00000462482 HAPLN1P10915 354 aaPredicted RBP16.58■□□□□ 0.24
SKA3-204ENST00000462482 TDGF1P13385 188 aa16.58■□□□□ 0.24
SKA3-204ENST00000462482 IDEP14735 1019 aa16.58■□□□□ 0.24
SKA3-204ENST00000462482 ATF6P18850 670 aa16.58■□□□□ 0.24
SKA3-204ENST00000462482 CDR1P51861 262 aa16.58■□□□□ 0.24
SKA3-204ENST00000462482 MYL7Q01449 175 aa16.58■□□□□ 0.24
SKA3-204ENST00000462482 ALCAMQ13740 583 aa16.58■□□□□ 0.24
SKA3-204ENST00000462482 PON2Q15165 354 aa16.58■□□□□ 0.24
SKA3-204ENST00000462482 L1TD1Q5T7N2 865 aaKnown RBP16.58■□□□□ 0.24
SKA3-204ENST00000462482 CC2D1AQ6P1N0 951 aaPredicted RBP16.58■□□□□ 0.24
SKA3-204ENST00000462482 CEP68Q76N32 757 aa16.58■□□□□ 0.24
SKA3-204ENST00000462482 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.58■□□□□ 0.24
SKA3-204ENST00000462482 LONP2Q86WA8 852 aa16.58■□□□□ 0.24
SKA3-204ENST00000462482 NOC3LQ8WTT2 800 aaKnown RBP16.58■□□□□ 0.24
SKA3-204ENST00000462482 MRPS31Q92665 395 aaKnown RBP16.58■□□□□ 0.24
SKA3-204ENST00000462482 EXOC4Q96A65 974 aa16.58■□□□□ 0.24
SKA3-204ENST00000462482 MKNK1Q9BUB5 465 aa16.58■□□□□ 0.24
SKA3-204ENST00000462482 RBM12Q9NTZ6 932 aaKnown RBP16.58■□□□□ 0.24
SKA3-204ENST00000462482 GTSE1Q9NYZ3 720 aa16.58■□□□□ 0.24
SKA3-204ENST00000462482 TBC1D7Q9P0N9 293 aa16.58■□□□□ 0.24
SKA3-204ENST00000462482 SRPRBQ9Y5M8 271 aaKnown RBP16.58■□□□□ 0.24
SKA3-204ENST00000462482 CLIC4Q9Y696 253 aa16.58■□□□□ 0.24
SKA3-204ENST00000462482 NCANO14594 1321 aa16.58■□□□□ 0.24
SKA3-204ENST00000462482 DOCK6Q96HP0 2047 aa16.58■□□□□ 0.24
SKA3-204ENST00000462482 NOTCH4Q99466 2003 aa16.57■□□□□ 0.24
SKA3-204ENST00000462482 CHURC1-FNTBB4DL54 471 aa16.57■□□□□ 0.24
SKA3-204ENST00000462482 LRP3O75074 770 aa16.57■□□□□ 0.24
SKA3-204ENST00000462482 PRPF40AO75400 957 aaKnown RBP16.57■□□□□ 0.24
SKA3-204ENST00000462482 PAPSS2O95340 614 aaPredicted RBP16.57■□□□□ 0.24
SKA3-204ENST00000462482 PRAMEF12O95522 483 aa16.57■□□□□ 0.24
SKA3-204ENST00000462482 CSH1P0DML2 217 aa16.57■□□□□ 0.24
SKA3-204ENST00000462482 CSH2P0DML3 217 aa16.57■□□□□ 0.24
SKA3-204ENST00000462482 FNTBP49356 437 aa16.57■□□□□ 0.24
SKA3-204ENST00000462482 RPL10AP62906 217 aaKnown RBP16.57■□□□□ 0.24
SKA3-204ENST00000462482 HEATR6Q6AI08 1181 aaKnown RBP16.57■□□□□ 0.24
SKA3-204ENST00000462482 EFCAB13Q8IY85 973 aa16.57■□□□□ 0.24
SKA3-204ENST00000462482 CMTM8Q8IZV2 173 aa16.57■□□□□ 0.24
SKA3-204ENST00000462482 TMEM86AQ8N2M4 240 aa16.57■□□□□ 0.24
SKA3-204ENST00000462482 RTKNQ9BST9 563 aa16.57■□□□□ 0.24
SKA3-204ENST00000462482 KIF9Q9HAQ2 790 aa16.57■□□□□ 0.24
SKA3-204ENST00000462482 RBAKQ9NYW8 714 aaPredicted RBP16.57■□□□□ 0.24
SKA3-204ENST00000462482 UXTQ9UBK9 157 aaPredicted RBP16.57■□□□□ 0.24
SKA3-204ENST00000462482 MAGED2Q9UNF1 606 aaPredicted RBP16.57■□□□□ 0.24
SKA3-204ENST00000462482 AGAP1Q9UPQ3 857 aa16.57■□□□□ 0.24
SKA3-204ENST00000462482 ZNF292O60281 2723 aa16.57■□□□□ 0.24
SKA3-204ENST00000462482 MYMKA6NI61 221 aa16.56■□□□□ 0.24
SKA3-204ENST00000462482 SOBPA7XYQ1 873 aa16.56■□□□□ 0.24
SKA3-204ENST00000462482 FOXD2O60548 495 aaPredicted RBP16.56■□□□□ 0.24
SKA3-204ENST00000462482 ATG13O75143 517 aa16.56■□□□□ 0.24
SKA3-204ENST00000462482 ITGB3P05106 788 aa16.56■□□□□ 0.24
SKA3-204ENST00000462482 KRT19P08727 400 aa16.56■□□□□ 0.24
SKA3-204ENST00000462482 GARTP22102 1010 aa16.56■□□□□ 0.24
SKA3-204ENST00000462482 ADSSP30520 456 aa16.56■□□□□ 0.24
SKA3-204ENST00000462482 POLR2BP30876 1174 aaKnown RBP16.56■□□□□ 0.24
SKA3-204ENST00000462482 STAT6P42226 847 aa16.56■□□□□ 0.24
SKA3-204ENST00000462482 CEBPZQ03701 1054 aaKnown RBP16.56■□□□□ 0.24
SKA3-204ENST00000462482 SPEM2Q0P670 501 aa16.56■□□□□ 0.24
SKA3-204ENST00000462482 GRSF1Q12849 480 aaKnown RBP eCLIP16.56■□□□□ 0.24
SKA3-204ENST00000462482 GAS6Q14393 721 aa16.56■□□□□ 0.24
SKA3-204ENST00000462482 TXNDC11Q6PKC3 985 aa16.56■□□□□ 0.24
SKA3-204ENST00000462482 CRELD2Q6UXH1 353 aaPredicted RBP16.56■□□□□ 0.24
SKA3-204ENST00000462482 STXBP4Q6ZWJ1 553 aa16.56■□□□□ 0.24
SKA3-204ENST00000462482 USP49Q70CQ1 688 aa16.56■□□□□ 0.24
SKA3-204ENST00000462482 LRRTM3Q86VH5 581 aa16.56■□□□□ 0.24
SKA3-204ENST00000462482 BRSK2Q8IWQ3 736 aa16.56■□□□□ 0.24
SKA3-204ENST00000462482 CSGALNACT2Q8N6G5 542 aa16.56■□□□□ 0.24
SKA3-204ENST00000462482 MAB21L3Q8N8X9 362 aa16.56■□□□□ 0.24
SKA3-204ENST00000462482 SAAL1Q96ER3 474 aa16.56■□□□□ 0.24
SKA3-204ENST00000462482 LRRC3BQ96PB8 259 aa16.56■□□□□ 0.24
SKA3-204ENST00000462482 SLC46A2Q9BY10 475 aa16.56■□□□□ 0.24
SKA3-204ENST00000462482 TMEM206Q9H813 350 aa16.56■□□□□ 0.24
SKA3-204ENST00000462482 IL21Q9HBE4 155 aa16.56■□□□□ 0.24
SKA3-204ENST00000462482 OLFML3Q9NRN5 406 aa16.56■□□□□ 0.24
SKA3-204ENST00000462482 GKN1Q9NS71 199 aa16.56■□□□□ 0.24
SKA3-204ENST00000462482 FBXO2Q9UK22 296 aaPredicted RBP16.56■□□□□ 0.24
SKA3-204ENST00000462482 ITGA11Q9UKX5 1188 aa16.56■□□□□ 0.24
SKA3-204ENST00000462482 MIA3Q5JRA6 1907 aa16.56■□□□□ 0.24
SKA3-204ENST00000462482 CITO14578 2027 aa16.55■□□□□ 0.24
SKA3-204ENST00000462482 VPS13AQ96RL7 3174 aa16.55■□□□□ 0.24
SKA3-204ENST00000462482 PPP1R37O75864 691 aa16.55■□□□□ 0.24
SKA3-204ENST00000462482 TMEM191BP0C7N4 346 aa16.55■□□□□ 0.24
SKA3-204ENST00000462482 ATXN1P54253 815 aaKnown RBP16.55■□□□□ 0.24
SKA3-204ENST00000462482 NLRP12P59046 1061 aa16.55■□□□□ 0.24
SKA3-204ENST00000462482 RBP5P82980 135 aa16.55■□□□□ 0.24
SKA3-204ENST00000462482 TNK2Q07912 1038 aa16.55■□□□□ 0.24
SKA3-204ENST00000462482 MYO1EQ12965 1108 aa16.55■□□□□ 0.24
SKA3-204ENST00000462482 Q6ZS52 159 aa16.55■□□□□ 0.24
SKA3-204ENST00000462482 PDCL2Q8N4E4 241 aa16.55■□□□□ 0.24
SKA3-204ENST00000462482 LRRC52Q8N7C0 313 aa16.55■□□□□ 0.24
SKA3-204ENST00000462482 CLIC6Q96NY7 704 aa16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms