RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 SMG7Q92540 1137 aaKnown RBP24.46■■□□□ 1.51
CCDC28B-203ENST00000461819 CNOT6LQ96LI5 555 aaKnown RBP24.46■■□□□ 1.51
CCDC28B-203ENST00000461819 ACBD6Q9BR61 282 aa24.46■■□□□ 1.51
CCDC28B-203ENST00000461819 SMYD3Q9H7B4 428 aa24.46■■□□□ 1.51
CCDC28B-203ENST00000461819 MAFFQ9ULX9 164 aa24.46■■□□□ 1.51
CCDC28B-203ENST00000461819 GABRDO14764 452 aa24.45■■□□□ 1.5
CCDC28B-203ENST00000461819 N4BP1O75113 896 aaKnown RBP24.45■■□□□ 1.5
CCDC28B-203ENST00000461819 TACC1O75410 805 aa24.45■■□□□ 1.5
CCDC28B-203ENST00000461819 SEC24AO95486 1093 aa24.45■■□□□ 1.5
CCDC28B-203ENST00000461819 HNRNPA1P09651 372 aaKnown RBP eCLIP24.45■■□□□ 1.5
CCDC28B-203ENST00000461819 RTL10Q7L3V2 364 aa24.45■■□□□ 1.5
CCDC28B-203ENST00000461819 TRIM59Q8IWR1 403 aa24.45■■□□□ 1.5
CCDC28B-203ENST00000461819 OR6B3Q8NGW1 331 aa24.45■■□□□ 1.5
CCDC28B-203ENST00000461819 SUSD6Q92537 303 aa24.45■■□□□ 1.5
CCDC28B-203ENST00000461819 NECTIN4Q96NY8 510 aa24.45■■□□□ 1.5
CCDC28B-203ENST00000461819 MRPL45Q9BRJ2 306 aaKnown RBP24.45■■□□□ 1.5
CCDC28B-203ENST00000461819 PRKD2Q9BZL6 878 aa24.45■■□□□ 1.5
CCDC28B-203ENST00000461819 UTP18Q9Y5J1 556 aaKnown RBP eCLIP24.45■■□□□ 1.5
CCDC28B-203ENST00000461819 MTMR11A4FU01 709 aa24.44■■□□□ 1.5
CCDC28B-203ENST00000461819 CCL16O15467 120 aa24.44■■□□□ 1.5
CCDC28B-203ENST00000461819 HCRTO43612 131 aa24.44■■□□□ 1.5
CCDC28B-203ENST00000461819 XYLBO75191 536 aa24.44■■□□□ 1.5
CCDC28B-203ENST00000461819 LRG1P02750 347 aa24.44■■□□□ 1.5
CCDC28B-203ENST00000461819 HOXA9P31269 272 aa24.44■■□□□ 1.5
CCDC28B-203ENST00000461819 GNL1P36915 607 aaPredicted RBP24.44■■□□□ 1.5
CCDC28B-203ENST00000461819 RAP1GAPP47736 663 aa24.44■■□□□ 1.5
CCDC28B-203ENST00000461819 FMO5P49326 533 aa24.44■■□□□ 1.5
CCDC28B-203ENST00000461819 INTS6LQ5JSJ4 861 aaKnown RBP24.44■■□□□ 1.5
CCDC28B-203ENST00000461819 CYP26C1Q6V0L0 522 aa24.44■■□□□ 1.5
CCDC28B-203ENST00000461819 FAM114A1Q8IWE2 563 aa24.44■■□□□ 1.5
CCDC28B-203ENST00000461819 FEZF2Q8TBJ5 459 aa24.44■■□□□ 1.5
CCDC28B-203ENST00000461819 THAP9Q9H5L6 903 aa24.44■■□□□ 1.5
CCDC28B-203ENST00000461819 RAB20Q9NX57 234 aa24.44■■□□□ 1.5
CCDC28B-203ENST00000461819 INSL5Q9Y5Q6 135 aa24.44■■□□□ 1.5
CCDC28B-203ENST00000461819 PDGFRBP09619 1106 aa24.43■■□□□ 1.5
CCDC28B-203ENST00000461819 FAM163BP0C2L3 166 aa24.43■■□□□ 1.5
CCDC28B-203ENST00000461819 CDR1P51861 262 aa24.43■■□□□ 1.5
CCDC28B-203ENST00000461819 TYRO3Q06418 890 aa24.43■■□□□ 1.5
CCDC28B-203ENST00000461819 SMARCB1Q12824 385 aa24.43■■□□□ 1.5
CCDC28B-203ENST00000461819 DUSP4Q13115 394 aa24.43■■□□□ 1.5
CCDC28B-203ENST00000461819 WDR44Q5JSH3 913 aa24.43■■□□□ 1.5
CCDC28B-203ENST00000461819 ATAD1Q8NBU5 361 aa24.43■■□□□ 1.5
CCDC28B-203ENST00000461819 ADAMTS19Q8TE59 1207 aa24.43■■□□□ 1.5
CCDC28B-203ENST00000461819 SEMA4DQ92854 862 aa24.43■■□□□ 1.5
CCDC28B-203ENST00000461819 ZNF707Q96C28 371 aaPredicted RBP24.43■■□□□ 1.5
CCDC28B-203ENST00000461819 SYT15Q9BQS2 421 aa24.43■■□□□ 1.5
CCDC28B-203ENST00000461819 NIF3L1Q9GZT8 377 aa24.43■■□□□ 1.5
CCDC28B-203ENST00000461819 ABI2Q9NYB9 513 aaPredicted RBP24.43■■□□□ 1.5
CCDC28B-203ENST00000461819 MAGEC2Q9UBF1 373 aaPredicted RBP24.43■■□□□ 1.5
CCDC28B-203ENST00000461819 CDH9Q9ULB4 789 aa24.43■■□□□ 1.5
CCDC28B-203ENST00000461819 A8MXQ7 604 aa24.42■■□□□ 1.5
CCDC28B-203ENST00000461819 VNN2O95498 520 aa24.42■■□□□ 1.5
CCDC28B-203ENST00000461819 AFPP02771 609 aaKnown RBP24.42■■□□□ 1.5
CCDC28B-203ENST00000461819 LMO2P25791 158 aa24.42■■□□□ 1.5
CCDC28B-203ENST00000461819 ASPAP45381 313 aa24.42■■□□□ 1.5
CCDC28B-203ENST00000461819 MTIF2P46199 727 aaKnown RBP24.42■■□□□ 1.5
CCDC28B-203ENST00000461819 CDH8P55286 799 aa24.42■■□□□ 1.5
CCDC28B-203ENST00000461819 PSMC1P62191 440 aaKnown RBP24.42■■□□□ 1.5
CCDC28B-203ENST00000461819 CETN1Q12798 172 aa24.42■■□□□ 1.5
CCDC28B-203ENST00000461819 KCNH2Q12809 1159 aa24.42■■□□□ 1.5
CCDC28B-203ENST00000461819 NFE2Q16621 373 aaPredicted RBP24.42■■□□□ 1.5
CCDC28B-203ENST00000461819 C11orf57Q6ZUT1 292 aaPredicted RBP24.42■■□□□ 1.5
CCDC28B-203ENST00000461819 LRRTM3Q86VH5 581 aa24.42■■□□□ 1.5
CCDC28B-203ENST00000461819 C2orf15Q8WU43 125 aaKnown RBP24.42■■□□□ 1.5
CCDC28B-203ENST00000461819 POMKQ9H5K3 350 aa24.42■■□□□ 1.5
CCDC28B-203ENST00000461819 SLC27A5Q9Y2P5 690 aa24.42■■□□□ 1.5
CCDC28B-203ENST00000461819 PCDHB5Q9Y5E4 795 aa24.42■■□□□ 1.5
CCDC28B-203ENST00000461819 DOCK6Q96HP0 2047 aa24.41■■□□□ 1.5
CCDC28B-203ENST00000461819 LRRN2O75325 713 aa24.41■■□□□ 1.5
CCDC28B-203ENST00000461819 TWF1Q12792 350 aa24.41■■□□□ 1.5
CCDC28B-203ENST00000461819 SKOR2Q2VWA4 1001 aaPredicted RBP24.41■■□□□ 1.5
CCDC28B-203ENST00000461819 HSP90AA4PQ58FG1 418 aa24.41■■□□□ 1.5
CCDC28B-203ENST00000461819 ELMOD1Q8N336 334 aa24.41■■□□□ 1.5
CCDC28B-203ENST00000461819 SPPL2BQ8TCT7 592 aa24.41■■□□□ 1.5
CCDC28B-203ENST00000461819 SEPT5Q99719 369 aaPredicted RBP24.41■■□□□ 1.5
CCDC28B-203ENST00000461819 PHF7Q9BWX1 381 aaPredicted RBP24.41■■□□□ 1.5
CCDC28B-203ENST00000461819 RHOBTB2Q9BYZ6 727 aa24.41■■□□□ 1.5
CCDC28B-203ENST00000461819 SDCBP2Q9H190 292 aa24.41■■□□□ 1.5
CCDC28B-203ENST00000461819 DNAJC25Q9H1X3 360 aa24.41■■□□□ 1.5
CCDC28B-203ENST00000461819 APOBEC3GQ9HC16 384 aaKnown RBP24.41■■□□□ 1.5
CCDC28B-203ENST00000461819 TMLHEQ9NVH6 421 aa24.41■■□□□ 1.5
CCDC28B-203ENST00000461819 PRKAG3Q9UGI9 489 aa24.41■■□□□ 1.5
CCDC28B-203ENST00000461819 GTF3C4Q9UKN8 822 aa24.41■■□□□ 1.5
CCDC28B-203ENST00000461819 COQ4Q9Y3A0 265 aa24.41■■□□□ 1.5
CCDC28B-203ENST00000461819 YIPF1Q9Y548 306 aa24.41■■□□□ 1.5
CCDC28B-203ENST00000461819 PTPRDP23468 1912 aa24.41■■□□□ 1.5
CCDC28B-203ENST00000461819 LETM1O95202 739 aaPredicted RBP24.4■■□□□ 1.5
CCDC28B-203ENST00000461819 PAPLNO95428 1278 aa24.4■■□□□ 1.5
CCDC28B-203ENST00000461819 PLD1Q13393 1074 aa24.4■■□□□ 1.5
CCDC28B-203ENST00000461819 MGAT5BQ3V5L5 792 aa24.4■■□□□ 1.5
CCDC28B-203ENST00000461819 IRF2BP1Q8IU81 584 aa24.4■■□□□ 1.5
CCDC28B-203ENST00000461819 TTC9BQ8N6N2 239 aa24.4■■□□□ 1.5
CCDC28B-203ENST00000461819 ENOX1Q8TC92 643 aaKnown RBP24.4■■□□□ 1.5
CCDC28B-203ENST00000461819 CRISPLD1Q9H336 500 aa24.4■■□□□ 1.5
CCDC28B-203ENST00000461819 NFE2L3Q9Y4A8 694 aa24.4■■□□□ 1.5
CCDC28B-203ENST00000461819 P4HA2O15460 535 aa24.39■■□□□ 1.49
CCDC28B-203ENST00000461819 ATP2C2O75185 946 aa24.39■■□□□ 1.49
CCDC28B-203ENST00000461819 POU2F2P09086 479 aa24.39■■□□□ 1.49
CCDC28B-203ENST00000461819 ALDH1A3P47895 512 aa24.39■■□□□ 1.49
CCDC28B-203ENST00000461819 MAPRE1Q15691 268 aaKnown RBP24.39■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms