RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 TRIM48Q8IWZ4 208 aa13.87□□□□□ -0.19
CCDC88A-204ENST00000413716 CLYBLQ8N0X4 340 aa13.87□□□□□ -0.19
CCDC88A-204ENST00000413716 KCNT1Q5JUK3 1230 aa13.87□□□□□ -0.19
CCDC88A-204ENST00000413716 TTC23Q5W5X9 447 aa13.87□□□□□ -0.19
CCDC88A-204ENST00000413716 OTUD7AQ8TE49 926 aaPredicted RBP13.87□□□□□ -0.19
CCDC88A-204ENST00000413716 FAM210AQ96ND0 272 aa13.87□□□□□ -0.19
CCDC88A-204ENST00000413716 TMEM138Q9NPI0 162 aa13.87□□□□□ -0.19
CCDC88A-204ENST00000413716 TUBA8Q9NY65 449 aaPredicted RBP13.87□□□□□ -0.19
CCDC88A-204ENST00000413716 BLMP54132 1417 aaPredicted RBP13.87□□□□□ -0.19
CCDC88A-204ENST00000413716 KPNA6O60684 536 aa13.87□□□□□ -0.19
CCDC88A-204ENST00000413716 CCNE1P24864 410 aa13.87□□□□□ -0.19
CCDC88A-204ENST00000413716 ACLYP53396 1101 aa13.87□□□□□ -0.19
CCDC88A-204ENST00000413716 VEPH1Q14D04 833 aa13.87□□□□□ -0.19
CCDC88A-204ENST00000413716 PYHIN1Q6K0P9 492 aa13.87□□□□□ -0.19
CCDC88A-204ENST00000413716 SYTL1Q8IYJ3 562 aa13.87□□□□□ -0.19
CCDC88A-204ENST00000413716 TMEM79Q9BSE2 394 aa13.87□□□□□ -0.19
CCDC88A-204ENST00000413716 POLR1DQ9Y2S0 133 aa13.87□□□□□ -0.19
CCDC88A-204ENST00000413716 ZBTB39O15060 712 aa13.86□□□□□ -0.19
CCDC88A-204ENST00000413716 RASA1P20936 1047 aa13.86□□□□□ -0.19
CCDC88A-204ENST00000413716 ST8SIA6P61647 398 aa13.86□□□□□ -0.19
CCDC88A-204ENST00000413716 PTK6Q13882 451 aa13.86□□□□□ -0.19
CCDC88A-204ENST00000413716 USP10Q14694 798 aaKnown RBP13.86□□□□□ -0.19
CCDC88A-204ENST00000413716 GRAMD1CQ8IYS0 662 aa13.86□□□□□ -0.19
CCDC88A-204ENST00000413716 UBXN2AP68543 259 aa13.86□□□□□ -0.19
CCDC88A-204ENST00000413716 RALGDSQ12967 914 aa13.86□□□□□ -0.19
CCDC88A-204ENST00000413716 EIF4A2Q14240 407 aaKnown RBP13.86□□□□□ -0.19
CCDC88A-204ENST00000413716 CATSPER4Q7RTX7 472 aa13.86□□□□□ -0.19
CCDC88A-204ENST00000413716 TMC4Q7Z404 712 aa13.86□□□□□ -0.19
CCDC88A-204ENST00000413716 KIF2BQ8N4N8 673 aa13.86□□□□□ -0.19
CCDC88A-204ENST00000413716 STOML2Q9UJZ1 356 aa13.86□□□□□ -0.19
CCDC88A-204ENST00000413716 GCC2Q8IWJ2 1684 aa13.86□□□□□ -0.19
CCDC88A-204ENST00000413716 SFI1A8K8P3 1242 aa13.86□□□□□ -0.19
CCDC88A-204ENST00000413716 POU1F1P28069 291 aa13.86□□□□□ -0.19
CCDC88A-204ENST00000413716 ADD1P35611 737 aaKnown RBP13.86□□□□□ -0.19
CCDC88A-204ENST00000413716 RIBC1Q8N443 379 aaPredicted RBP13.86□□□□□ -0.19
CCDC88A-204ENST00000413716 SIK2Q9H0K1 926 aa13.86□□□□□ -0.19
CCDC88A-204ENST00000413716 ABCC4O15439 1325 aa13.86□□□□□ -0.19
CCDC88A-204ENST00000413716 CCT8L1PA6NM43 557 aa13.86□□□□□ -0.19
CCDC88A-204ENST00000413716 VAMP4O75379 141 aa13.86□□□□□ -0.19
CCDC88A-204ENST00000413716 ZNF682O95780 498 aa13.86□□□□□ -0.19
CCDC88A-204ENST00000413716 TWF1Q12792 350 aa13.86□□□□□ -0.19
CCDC88A-204ENST00000413716 PTPN21Q16825 1174 aa13.86□□□□□ -0.19
CCDC88A-204ENST00000413716 FUT11Q495W5 492 aa13.86□□□□□ -0.19
CCDC88A-204ENST00000413716 CCSAPQ6IQ19 270 aaPredicted RBP13.86□□□□□ -0.19
CCDC88A-204ENST00000413716 MIER2Q8N344 545 aa13.86□□□□□ -0.19
CCDC88A-204ENST00000413716 CDCA7Q9BWT1 371 aaPredicted RBP13.86□□□□□ -0.19
CCDC88A-204ENST00000413716 PARD3Q8TEW0 1356 aa13.86□□□□□ -0.19
CCDC88A-204ENST00000413716 PPP1R37O75864 691 aa13.86□□□□□ -0.19
CCDC88A-204ENST00000413716 MMP1P03956 469 aa13.86□□□□□ -0.19
CCDC88A-204ENST00000413716 POLBP06746 335 aa13.86□□□□□ -0.19
CCDC88A-204ENST00000413716 KPNA1P52294 538 aaPredicted RBP13.86□□□□□ -0.19
CCDC88A-204ENST00000413716 RPL19P84098 196 aaKnown RBP13.86□□□□□ -0.19
CCDC88A-204ENST00000413716 PROSER1Q86XN7 944 aa13.86□□□□□ -0.19
CCDC88A-204ENST00000413716 CYLDQ9NQC7 956 aa13.86□□□□□ -0.19
CCDC88A-204ENST00000413716 MYL12BO14950 172 aa13.86□□□□□ -0.19
CCDC88A-204ENST00000413716 AREL1O15033 823 aa13.86□□□□□ -0.19
CCDC88A-204ENST00000413716 P4HA2O15460 535 aa13.86□□□□□ -0.19
CCDC88A-204ENST00000413716 NR3C1P04150 777 aa13.86□□□□□ -0.19
CCDC88A-204ENST00000413716 TARSP26639 723 aaKnown RBP13.86□□□□□ -0.19
CCDC88A-204ENST00000413716 SLC1A1P43005 524 aa13.86□□□□□ -0.19
CCDC88A-204ENST00000413716 ESYT3A0FGR9 886 aa13.86□□□□□ -0.19
CCDC88A-204ENST00000413716 HEATR9A2RTY3 570 aa13.86□□□□□ -0.19
CCDC88A-204ENST00000413716 PPP2R1BP30154 601 aa13.86□□□□□ -0.19
CCDC88A-204ENST00000413716 RFX3P48380 749 aa13.86□□□□□ -0.19
CCDC88A-204ENST00000413716 GTF2IP78347 998 aa13.86□□□□□ -0.19
CCDC88A-204ENST00000413716 CAMK1DQ8IU85 385 aa13.86□□□□□ -0.19
CCDC88A-204ENST00000413716 ZNF671Q8TAW3 534 aa13.86□□□□□ -0.19
CCDC88A-204ENST00000413716 ZNF483Q8TF39 744 aaPredicted RBP13.86□□□□□ -0.19
CCDC88A-204ENST00000413716 TRAPPC9Q96Q05 1148 aa13.86□□□□□ -0.19
CCDC88A-204ENST00000413716 ROGDIQ9GZN7 287 aa13.86□□□□□ -0.19
CCDC88A-204ENST00000413716 ZNF222Q9UK12 451 aa13.86□□□□□ -0.19
CCDC88A-204ENST00000413716 FAM20BO75063 409 aa13.86□□□□□ -0.19
CCDC88A-204ENST00000413716 MSANTD1Q6ZTZ1 278 aa13.86□□□□□ -0.19
CCDC88A-204ENST00000413716 MUC3BQ9H195 1237 aa13.86□□□□□ -0.19
CCDC88A-204ENST00000413716 MGAT4AQ9UM21 535 aa13.86□□□□□ -0.19
CCDC88A-204ENST00000413716 TEX46H3BTG2 121 aa13.85□□□□□ -0.19
CCDC88A-204ENST00000413716 GMFBP60983 142 aa13.85□□□□□ -0.19
CCDC88A-204ENST00000413716 GPD1LQ8N335 351 aa13.85□□□□□ -0.19
CCDC88A-204ENST00000413716 MCM8Q9UJA3 840 aa13.85□□□□□ -0.19
CCDC88A-204ENST00000413716 NPATQ14207 1427 aa13.85□□□□□ -0.19
CCDC88A-204ENST00000413716 PAICSP22234 425 aaKnown RBP13.85□□□□□ -0.19
CCDC88A-204ENST00000413716 DPYDQ12882 1025 aa13.85□□□□□ -0.19
CCDC88A-204ENST00000413716 NT5DC4Q86YG4 428 aa13.85□□□□□ -0.19
CCDC88A-204ENST00000413716 ATL2Q8NHH9 583 aa13.85□□□□□ -0.19
CCDC88A-204ENST00000413716 ARHGEF26Q96DR7 871 aa13.85□□□□□ -0.19
CCDC88A-204ENST00000413716 PAGE5Q96GU1 130 aa13.85□□□□□ -0.19
CCDC88A-204ENST00000413716 ZNF333Q96JL9 665 aa13.85□□□□□ -0.19
CCDC88A-204ENST00000413716 CYP2C19P33261 490 aa13.85□□□□□ -0.19
CCDC88A-204ENST00000413716 ABATP80404 500 aa13.85□□□□□ -0.19
CCDC88A-204ENST00000413716 PNMA8BQ9ULN7 279 aaPredicted RBP13.85□□□□□ -0.19
CCDC88A-204ENST00000413716 SNX13Q9Y5W8 968 aa13.85□□□□□ -0.19
CCDC88A-204ENST00000413716 BMP10O95393 424 aa13.85□□□□□ -0.19
CCDC88A-204ENST00000413716 CNPP09543 421 aaKnown RBP13.85□□□□□ -0.19
CCDC88A-204ENST00000413716 SPRP35270 261 aaPredicted RBP13.85□□□□□ -0.19
CCDC88A-204ENST00000413716 FAM83EQ2M2I3 478 aa13.85□□□□□ -0.19
CCDC88A-204ENST00000413716 RCOR2Q8IZ40 523 aa13.85□□□□□ -0.19
CCDC88A-204ENST00000413716 ATG16L2Q8NAA4 619 aa13.85□□□□□ -0.19
CCDC88A-204ENST00000413716 FAM167AQ96KS9 214 aa13.85□□□□□ -0.19
CCDC88A-204ENST00000413716 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.85□□□□□ -0.196e-7■■□□□ 12.4
CCDC88A-204ENST00000413716 PSMB9P28065 219 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms