RNA–Protein interactions for RNA: YML031W

NDC1, Transcript of Subunit of the transmembrane ring of the nuclear pore complex (NPC), yeast

Gene NDC1, Length 1,968 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NDC1	YML031W	AVO2	Q04749	426 aa		4.22	□□□□□ -1.73
NDC1	YML031W	TDA6	Q06466	467 aa		4.22	□□□□□ -1.73
NDC1	YML031W	MPD1	Q12404	318 aa	Known RBP	4.22	□□□□□ -1.73
NDC1	YML031W	SWD2	P36104	329 aa	Predicted RBP	4.21	□□□□□ -1.74
NDC1	YML031W	MRPS9	P38120	278 aa		4.21	□□□□□ -1.74
NDC1	YML031W	YBR292C	P38357	123 aa		4.21	□□□□□ -1.74
NDC1	YML031W	CUE1	P38428	203 aa		4.21	□□□□□ -1.74
NDC1	YML031W	NOP16	P40007	231 aa	Known RBP	4.21	□□□□□ -1.74
NDC1	YML031W	PHS1	P40857	217 aa		4.21	□□□□□ -1.74
NDC1	YML031W	YNR066C	P53752	436 aa		4.21	□□□□□ -1.74
NDC1	YML031W	UPS1	Q05776	175 aa		4.21	□□□□□ -1.74
NDC1	YML031W	YOR352W	Q08816	343 aa		4.21	□□□□□ -1.74
NDC1	YML031W	RFM1	Q12192	310 aa		4.21	□□□□□ -1.74
NDC1	YML031W	HUT1	Q12520	339 aa		4.21	□□□□□ -1.74
NDC1	YML031W	RPS8A	P0CX39	200 aa	Known RBP	4.2	□□□□□ -1.74
NDC1	YML031W	RPS8B	P0CX40	200 aa	Known RBP	4.2	□□□□□ -1.74
NDC1	YML031W	PHO85	P17157	305 aa		4.2	□□□□□ -1.74
NDC1	YML031W	TOM40	P23644	387 aa	Known RBP	4.2	□□□□□ -1.74
NDC1	YML031W	RPL14A	P36105	138 aa	Known RBP	4.2	□□□□□ -1.74
NDC1	YML031W	TRS20	P38334	175 aa		4.2	□□□□□ -1.74
NDC1	YML031W	SLM6	P38343	150 aa		4.2	□□□□□ -1.74
NDC1	YML031W	RPL14B	P38754	138 aa	Known RBP	4.2	□□□□□ -1.74
NDC1	YML031W	IRC24	P40580	263 aa		4.2	□□□□□ -1.74
NDC1	YML031W	VPS71	Q03433	280 aa		4.2	□□□□□ -1.74
NDC1	YML031W	FSH2	Q05015	223 aa		4.2	□□□□□ -1.74
NDC1	YML031W	TMA17	Q12513	150 aa		4.2	□□□□□ -1.74
NDC1	YML031W	COA2	Q3E823	68 aa		4.2	□□□□□ -1.74
NDC1	YML031W	YLL053C	P0CD98	152 aa		4.2	□□□□□ -1.74
NDC1	YML031W	PRE9	P23638	258 aa	Known RBP	4.2	□□□□□ -1.74
NDC1	YML031W	MIG1	P27705	504 aa		4.2	□□□□□ -1.74
NDC1	YML031W	ACP1	P32463	125 aa		4.2	□□□□□ -1.74
NDC1	YML031W	YBR197C	P38306	217 aa		4.2	□□□□□ -1.74
NDC1	YML031W	PTC7	P38797	343 aa		4.2	□□□□□ -1.74
NDC1	YML031W	WSS1	P38838	269 aa		4.2	□□□□□ -1.74
NDC1	YML031W	SUR2	P38992	349 aa		4.2	□□□□□ -1.74
NDC1	YML031W	GWT1	P47026	490 aa		4.2	□□□□□ -1.74
NDC1	YML031W	SKP1	P52286	194 aa		4.2	□□□□□ -1.74
NDC1	YML031W	SLX9	P53251	210 aa	Predicted RBP	4.2	□□□□□ -1.74
NDC1	YML031W	RPL21A	Q02753	160 aa	Known RBP	4.2	□□□□□ -1.74
NDC1	YML031W	YOR186W	Q08560	144 aa		4.2	□□□□□ -1.74
NDC1	YML031W	ERG27	Q12452	347 aa	Known RBP	4.2	□□□□□ -1.74
NDC1	YML031W	RPL21B	Q12672	160 aa	Known RBP	4.2	□□□□□ -1.74
NDC1	YML031W	YIL134C-A	Q45U18	67 aa		4.2	□□□□□ -1.74
NDC1	YML031W	PAU19	P0CE85	124 aa		4.19	□□□□□ -1.74
NDC1	YML031W	PAU21	P0CE86	164 aa		4.19	□□□□□ -1.74
NDC1	YML031W	PAU22	P0CE87	164 aa		4.19	□□□□□ -1.74
NDC1	YML031W	BGL2	P15703	313 aa	Known RBP	4.19	□□□□□ -1.74
NDC1	YML031W	PAU3	P25610	124 aa		4.19	□□□□□ -1.74
NDC1	YML031W	CDC50	P25656	391 aa		4.19	□□□□□ -1.74
NDC1	YML031W	ALK2	P32789	676 aa	Predicted RBP	4.19	□□□□□ -1.74
NDC1	YML031W	PAC2	P39937	518 aa		4.19	□□□□□ -1.74
NDC1	YML031W	YJR012C	P47087	207 aa		4.19	□□□□□ -1.74
NDC1	YML031W	TTI2	P47168	421 aa		4.19	□□□□□ -1.74
NDC1	YML031W	ATX2	Q12067	313 aa		4.19	□□□□□ -1.74
NDC1	YML031W	FUN14	P18411	198 aa		4.18	□□□□□ -1.74
NDC1	YML031W	YCR025C	P25352	136 aa		4.18	□□□□□ -1.74
NDC1	YML031W	LSB5	P25369	354 aa		4.18	□□□□□ -1.74
NDC1	YML031W	ERG2	P32352	222 aa		4.18	□□□□□ -1.74
NDC1	YML031W	CPR5	P35176	225 aa		4.18	□□□□□ -1.74
NDC1	YML031W	PAU4	P53427	120 aa		4.18	□□□□□ -1.74
NDC1	YML031W	MSO1	P53604	210 aa	Known RBP	4.18	□□□□□ -1.74
NDC1	YML031W	HCH1	P53834	153 aa		4.18	□□□□□ -1.74
NDC1	YML031W	SPG4	Q04438	115 aa		4.18	□□□□□ -1.74
NDC1	YML031W	YDL242W	Q07746	117 aa		4.18	□□□□□ -1.74
NDC1	YML031W	YLR122C	Q12312	125 aa		4.18	□□□□□ -1.74
NDC1	YML031W	YNR034W-A	Q3E841	98 aa		4.18	□□□□□ -1.74
NDC1	YML031W	COA6	Q3E846	104 aa		4.18	□□□□□ -1.74
NDC1	YML031W	MSN1	P22148	382 aa		4.18	□□□□□ -1.74
NDC1	YML031W	UPS2	P35200	230 aa		4.18	□□□□□ -1.74
NDC1	YML031W	PAU5	P43575	122 aa		4.18	□□□□□ -1.74
NDC1	YML031W	OST3	P48439	350 aa		4.18	□□□□□ -1.74
NDC1	YML031W	PRR2	Q12310	699 aa		4.18	□□□□□ -1.74
NDC1	YML031W	AGC1	Q12482	902 aa		4.18	□□□□□ -1.74
NDC1	YML031W	ATG40	Q99325	256 aa		4.18	□□□□□ -1.74
NDC1	YML031W	PAU1	P0CE88	120 aa		4.17	□□□□□ -1.74
NDC1	YML031W	PAU14	P0CE89	120 aa		4.17	□□□□□ -1.74
NDC1	YML031W	PAU6	P0CE90	120 aa		4.17	□□□□□ -1.74
NDC1	YML031W	PAU18	P0CE91	120 aa		4.17	□□□□□ -1.74
NDC1	YML031W	PAU8	P0CE92	120 aa		4.17	□□□□□ -1.74
NDC1	YML031W	PAU11	P0CE93	120 aa		4.17	□□□□□ -1.74
NDC1	YML031W	FEN2	P25621	512 aa	Known RBP	4.17	□□□□□ -1.74
NDC1	YML031W	PAU13	P38725	120 aa		4.17	□□□□□ -1.74
NDC1	YML031W	PEX7	P39108	375 aa		4.17	□□□□□ -1.74
NDC1	YML031W	RTS2	P40962	232 aa		4.17	□□□□□ -1.74
NDC1	YML031W	MID1	P41821	548 aa		4.17	□□□□□ -1.74
NDC1	YML031W	SMD3	P43321	101 aa	Known RBP	4.17	□□□□□ -1.74
NDC1	YML031W	YFL015C	P43578	164 aa		4.17	□□□□□ -1.74
NDC1	YML031W	FIP1	P45976	327 aa		4.17	□□□□□ -1.74
NDC1	YML031W	YGR149W	P48236	432 aa		4.17	□□□□□ -1.74
NDC1	YML031W	ERG25	P53045	309 aa		4.17	□□□□□ -1.74
NDC1	YML031W	PAU10	Q03050	120 aa		4.17	□□□□□ -1.74
NDC1	YML031W	YMR090W	Q04304	227 aa	Known RBP	4.17	□□□□□ -1.74
NDC1	YML031W	PAU20	Q08322	120 aa		4.17	□□□□□ -1.74
NDC1	YML031W	SME1	Q12330	94 aa	Predicted RBP	4.17	□□□□□ -1.74
NDC1	YML031W	ATG5	Q12380	294 aa		4.17	□□□□□ -1.74
NDC1	YML031W	LAS17	Q12446	633 aa		4.17	□□□□□ -1.74
NDC1	YML031W	PAU9	Q3E770	120 aa		4.17	□□□□□ -1.74
NDC1	YML031W	CKA1	P15790	372 aa		4.16	□□□□□ -1.74
NDC1	YML031W	SPO13	P23624	291 aa		4.16	□□□□□ -1.74
NDC1	YML031W	PEX4	P29340	183 aa		4.16	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 27.4 ms