RNA–Protein interactions for RNA: ENST00000572665.1

CIITA-208, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-208ENST00000572665 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP10.37□□□□□ -0.75
CIITA-208ENST00000572665 NGRNQ9NPE2 291 aaKnown RBP10.37□□□□□ -0.75
CIITA-208ENST00000572665 ST7Q9NRC1 585 aa10.37□□□□□ -0.75
CIITA-208ENST00000572665 STOML1Q9UBI4 398 aa10.37□□□□□ -0.75
CIITA-208ENST00000572665 MAPK8IP1Q9UQF2 711 aa10.37□□□□□ -0.75
CIITA-208ENST00000572665 MSRB2Q9Y3D2 182 aa10.37□□□□□ -0.75
CIITA-208ENST00000572665 CYP46A1Q9Y6A2 500 aa10.37□□□□□ -0.75
CIITA-208ENST00000572665 MYO7AQ13402 2215 aa10.36□□□□□ -0.75
CIITA-208ENST00000572665 MSH4O15457 936 aa10.36□□□□□ -0.75
CIITA-208ENST00000572665 CDKL5O76039 1030 aa10.36□□□□□ -0.75
CIITA-208ENST00000572665 EOMESO95936 686 aa10.36□□□□□ -0.75
CIITA-208ENST00000572665 CENPBP07199 599 aaPredicted RBP10.36□□□□□ -0.75
CIITA-208ENST00000572665 CPA1P15085 419 aa10.36□□□□□ -0.75
CIITA-208ENST00000572665 PDIA3P30101 505 aaKnown RBP10.36□□□□□ -0.75
CIITA-208ENST00000572665 PMS1P54277 932 aaKnown RBP10.36□□□□□ -0.75
CIITA-208ENST00000572665 EVCP57679 992 aa10.36□□□□□ -0.75
CIITA-208ENST00000572665 CCT2P78371 535 aaKnown RBP10.36□□□□□ -0.75
CIITA-208ENST00000572665 FAM189BP81408 668 aa10.36□□□□□ -0.75
CIITA-208ENST00000572665 PRKCEQ02156 737 aa10.36□□□□□ -0.75
CIITA-208ENST00000572665 DLX2Q07687 328 aaPredicted RBP10.36□□□□□ -0.75
CIITA-208ENST00000572665 CAMK1Q14012 370 aa10.36□□□□□ -0.75
CIITA-208ENST00000572665 Q4G0T1 1027 aa10.36□□□□□ -0.75
CIITA-208ENST00000572665 HERC4Q5GLZ8 1057 aaPredicted RBP10.36□□□□□ -0.75
CIITA-208ENST00000572665 MOXD1Q6UVY6 613 aa10.36□□□□□ -0.75
CIITA-208ENST00000572665 C6orf15Q6UXA7 325 aaPredicted RBP10.36□□□□□ -0.75
CIITA-208ENST00000572665 RUFY3Q7L099 469 aa10.36□□□□□ -0.75
CIITA-208ENST00000572665 MIER3Q7Z3K6 550 aa10.36□□□□□ -0.75
CIITA-208ENST00000572665 COLGALT1Q8NBJ5 622 aa10.36□□□□□ -0.75
CIITA-208ENST00000572665 SMRP1Q8NCR6 262 aa10.36□□□□□ -0.75
CIITA-208ENST00000572665 MRPS27Q92552 414 aaKnown RBP10.36□□□□□ -0.75
CIITA-208ENST00000572665 ZNF274Q96GC6 653 aaPredicted RBP10.36□□□□□ -0.75
CIITA-208ENST00000572665 MSLNLQ96KJ4 702 aa10.36□□□□□ -0.75
CIITA-208ENST00000572665 DHRS1Q96LJ7 313 aa10.36□□□□□ -0.75
CIITA-208ENST00000572665 ZNF558Q96NG5 402 aa10.36□□□□□ -0.75
CIITA-208ENST00000572665 GCOM2Q9BZD3 368 aaPredicted RBP10.36□□□□□ -0.75
CIITA-208ENST00000572665 PIF1Q9H611 641 aa10.36□□□□□ -0.75
CIITA-208ENST00000572665 ENTPD7Q9NQZ7 604 aa10.36□□□□□ -0.75
CIITA-208ENST00000572665 CHST12Q9NRB3 414 aa10.36□□□□□ -0.75
CIITA-208ENST00000572665 TYW1Q9NV66 732 aaKnown RBP10.36□□□□□ -0.75
CIITA-208ENST00000572665 VPS54Q9P1Q0 977 aa10.36□□□□□ -0.75
CIITA-208ENST00000572665 SUCOQ9UBS9 1254 aaKnown RBP10.36□□□□□ -0.75
CIITA-208ENST00000572665 PCDHB10Q9UN67 800 aa10.36□□□□□ -0.75
CIITA-208ENST00000572665 B2RBV5 119 aa10.35□□□□□ -0.75
CIITA-208ENST00000572665 CHMP2AO43633 222 aa10.35□□□□□ -0.75
CIITA-208ENST00000572665 MGEA5O60502 916 aa10.35□□□□□ -0.75
CIITA-208ENST00000572665 CLEC3AO75596 197 aa10.35□□□□□ -0.75
CIITA-208ENST00000572665 LEFTY1O75610 366 aa10.35□□□□□ -0.75
CIITA-208ENST00000572665 GJB6O95452 261 aa10.35□□□□□ -0.75
CIITA-208ENST00000572665 ATF7P17544 494 aaPredicted RBP10.35□□□□□ -0.75
CIITA-208ENST00000572665 SFPQP23246 707 aaKnown RBP eCLIP10.35□□□□□ -0.75
CIITA-208ENST00000572665 DNAJB1P25685 340 aa10.35□□□□□ -0.75
CIITA-208ENST00000572665 GATMP50440 423 aa10.35□□□□□ -0.75
CIITA-208ENST00000572665 CLCN3P51790 818 aa10.35□□□□□ -0.75
CIITA-208ENST00000572665 NTRK3Q16288 839 aa10.35□□□□□ -0.75
CIITA-208ENST00000572665 DUSP6Q16828 381 aa10.35□□□□□ -0.75
CIITA-208ENST00000572665 XKR3Q5GH77 459 aa10.35□□□□□ -0.75
CIITA-208ENST00000572665 FAM102BQ5T8I3 360 aa10.35□□□□□ -0.75
CIITA-208ENST00000572665 RBM23Q86U06 439 aaKnown RBP10.35□□□□□ -0.75
CIITA-208ENST00000572665 CDH24Q86UP0 819 aa10.35□□□□□ -0.75
CIITA-208ENST00000572665 BLIDQ8IZY5 108 aa10.35□□□□□ -0.75
CIITA-208ENST00000572665 GIMAP7Q8NHV1 300 aa10.35□□□□□ -0.75
CIITA-208ENST00000572665 TBCKQ8TEA7 893 aa10.35□□□□□ -0.75
CIITA-208ENST00000572665 SLC5A5Q92911 643 aa10.35□□□□□ -0.75
CIITA-208ENST00000572665 LENG9Q96B70 501 aa10.35□□□□□ -0.75
CIITA-208ENST00000572665 PPP1R16BQ96T49 567 aa10.35□□□□□ -0.75
CIITA-208ENST00000572665 NAP1L4Q99733 375 aaKnown RBP10.35□□□□□ -0.75
CIITA-208ENST00000572665 PRRX2Q99811 253 aa10.35□□□□□ -0.75
CIITA-208ENST00000572665 PHF7Q9BWX1 381 aaPredicted RBP10.35□□□□□ -0.75
CIITA-208ENST00000572665 STK39Q9UEW8 545 aa10.35□□□□□ -0.75
CIITA-208ENST00000572665 CYP3A7-CYP3A51PA0A087WV96 503 aa10.34□□□□□ -0.75
CIITA-208ENST00000572665 A0A0U1RQF3 1178 aa10.34□□□□□ -0.75
CIITA-208ENST00000572665 LINC01565O15544 149 aa10.34□□□□□ -0.75
CIITA-208ENST00000572665 EIF5BO60841 1220 aaKnown RBP10.34□□□□□ -0.75
CIITA-208ENST00000572665 FAM87AP0C7U9 286 aa10.34□□□□□ -0.75
CIITA-208ENST00000572665 FGFR1P11362 822 aa10.34□□□□□ -0.75
CIITA-208ENST00000572665 DARSP14868 501 aaKnown RBP10.34□□□□□ -0.75
CIITA-208ENST00000572665 HOXB8P17481 243 aaPredicted RBP10.34□□□□□ -0.75
CIITA-208ENST00000572665 CYP3A7P24462 503 aa10.34□□□□□ -0.75
CIITA-208ENST00000572665 ADMP35318 185 aa10.34□□□□□ -0.75
CIITA-208ENST00000572665 ALDH7A1P49419 539 aaKnown RBP10.34□□□□□ -0.75
CIITA-208ENST00000572665 GPC3P51654 580 aa10.34□□□□□ -0.75
CIITA-208ENST00000572665 GIT2Q14161 759 aa10.34□□□□□ -0.75
CIITA-208ENST00000572665 NONOQ15233 471 aaKnown RBP eCLIP10.34□□□□□ -0.75
CIITA-208ENST00000572665 VHLLQ6RSH7 139 aa10.34□□□□□ -0.75
CIITA-208ENST00000572665 KCNT2Q6UVM3 1135 aa10.34□□□□□ -0.75
CIITA-208ENST00000572665 ADGRD2Q7Z7M1 963 aa10.34□□□□□ -0.75
CIITA-208ENST00000572665 ZAR1Q86SH2 424 aa10.34□□□□□ -0.75
CIITA-208ENST00000572665 ZNF410Q86VK4 478 aa10.34□□□□□ -0.75
CIITA-208ENST00000572665 PPFIBP1Q86W92 1011 aa10.34□□□□□ -0.75
CIITA-208ENST00000572665 ECHDC2Q86YB7 292 aa10.34□□□□□ -0.75
CIITA-208ENST00000572665 LRRC71Q8N4P6 559 aa10.34□□□□□ -0.75
CIITA-208ENST00000572665 DAGLBQ8NCG7 672 aa10.34□□□□□ -0.75
CIITA-208ENST00000572665 RNF169Q8NCN4 708 aa10.34□□□□□ -0.75
CIITA-208ENST00000572665 KLHL6Q8WZ60 621 aa10.34□□□□□ -0.75
CIITA-208ENST00000572665 TBC1D32Q96NH3 1257 aa10.34□□□□□ -0.75
CIITA-208ENST00000572665 TCF25Q9BQ70 676 aa10.34□□□□□ -0.75
CIITA-208ENST00000572665 TM6SF1Q9BZW5 370 aa10.34□□□□□ -0.75
CIITA-208ENST00000572665 ADAMTS10Q9H324 1103 aa10.34□□□□□ -0.75
CIITA-208ENST00000572665 SPG21Q9NZD8 308 aa10.34□□□□□ -0.75
CIITA-208ENST00000572665 CLEC1BQ9P126 229 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms