RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 ARHGAP28Q9P2N2 729 aa6.88□□□□□ -1.31
VPS53-212ENST00000572259 FEZ2Q9UHY8 353 aaPredicted RBP6.88□□□□□ -1.31
VPS53-212ENST00000572259 DSEQ9UL01 958 aa6.88□□□□□ -1.31
VPS53-212ENST00000572259 CBLCQ9ULV8 474 aa6.88□□□□□ -1.31
VPS53-212ENST00000572259 DNM3Q9UQ16 869 aa6.88□□□□□ -1.31
VPS53-212ENST00000572259 MRFAP1Q9Y605 127 aa6.88□□□□□ -1.31
VPS53-212ENST00000572259 RPAP1Q9BWH6 1393 aaPredicted RBP6.87□□□□□ -1.31
VPS53-212ENST00000572259 MANSC4A6NHS7 340 aaPredicted RBP6.87□□□□□ -1.31
VPS53-212ENST00000572259 M0R3H8 397 aa6.87□□□□□ -1.31
VPS53-212ENST00000572259 ABLIM1O14639 778 aa6.87□□□□□ -1.31
VPS53-212ENST00000572259 NCAM2O15394 837 aa6.87□□□□□ -1.31
VPS53-212ENST00000572259 CTNND1O60716 968 aaKnown RBP6.87□□□□□ -1.31
VPS53-212ENST00000572259 GLRX3O76003 335 aaKnown RBP6.87□□□□□ -1.31
VPS53-212ENST00000572259 JUNBP17275 347 aaPredicted RBP6.87□□□□□ -1.31
VPS53-212ENST00000572259 RPS6KB1P23443 525 aa6.87□□□□□ -1.31
VPS53-212ENST00000572259 SLC6A11P48066 632 aa6.87□□□□□ -1.31
VPS53-212ENST00000572259 RGS3P49796 1198 aa6.87□□□□□ -1.31
VPS53-212ENST00000572259 CACNB3P54284 484 aa6.87□□□□□ -1.31
VPS53-212ENST00000572259 APBA1Q02410 837 aa6.87□□□□□ -1.31
VPS53-212ENST00000572259 PPFIA1Q13136 1202 aa6.87□□□□□ -1.31
VPS53-212ENST00000572259 IFIT1BQ5T764 474 aaKnown RBP6.87□□□□□ -1.31
VPS53-212ENST00000572259 VPS53Q5VIR6 699 aa6.87□□□□□ -1.31
VPS53-212ENST00000572259 SPATA1Q5VX52 437 aa6.87□□□□□ -1.31
VPS53-212ENST00000572259 OLFML2BQ68BL8 750 aa6.87□□□□□ -1.31
VPS53-212ENST00000572259 ARHGAP36Q6ZRI8 547 aa6.87□□□□□ -1.31
VPS53-212ENST00000572259 MOB2Q70IA6 237 aa6.87□□□□□ -1.31
VPS53-212ENST00000572259 OVCH1Q7RTY7 1134 aa6.87□□□□□ -1.31
VPS53-212ENST00000572259 MILR1Q7Z6M3 343 aa6.87□□□□□ -1.31
VPS53-212ENST00000572259 RASAL3Q86YV0 1011 aa6.87□□□□□ -1.31
VPS53-212ENST00000572259 IRF2BP1Q8IU81 584 aa6.87□□□□□ -1.31
VPS53-212ENST00000572259 TEX11Q8IYF3 940 aa6.87□□□□□ -1.31
VPS53-212ENST00000572259 SLC35G2Q8TBE7 412 aa6.87□□□□□ -1.31
VPS53-212ENST00000572259 NELL1Q92832 810 aa6.87□□□□□ -1.31
VPS53-212ENST00000572259 AHCYL2Q96HN2 611 aaKnown RBP6.87□□□□□ -1.31
VPS53-212ENST00000572259 FAXDC2Q96IV6 333 aa6.87□□□□□ -1.31
VPS53-212ENST00000572259 TEPSINQ96N21 525 aa6.87□□□□□ -1.31
VPS53-212ENST00000572259 SEZ6LQ9BYH1 1024 aa6.87□□□□□ -1.31
VPS53-212ENST00000572259 RNF38Q9H0F5 515 aa6.87□□□□□ -1.31
VPS53-212ENST00000572259 DHX36Q9H2U1 1008 aaKnown RBP6.87□□□□□ -1.31
VPS53-212ENST00000572259 SMOC1Q9H4F8 434 aa6.87□□□□□ -1.31
VPS53-212ENST00000572259 ALG13Q9NP73 1137 aaKnown RBP6.87□□□□□ -1.31
VPS53-212ENST00000572259 ECHDC1Q9NTX5 307 aa6.87□□□□□ -1.31
VPS53-212ENST00000572259 BLOC1S4Q9NUP1 217 aa6.87□□□□□ -1.31
VPS53-212ENST00000572259 AATFQ9NY61 560 aaKnown RBP eCLIP6.87□□□□□ -1.31
VPS53-212ENST00000572259 FNIP2Q9P278 1114 aa6.87□□□□□ -1.31
VPS53-212ENST00000572259 ZKSCAN5Q9Y2L8 839 aa6.87□□□□□ -1.31
VPS53-212ENST00000572259 SIT1Q9Y3P8 196 aa6.87□□□□□ -1.31
VPS53-212ENST00000572259 CASP8AP2Q9UKL3 1982 aa6.87□□□□□ -1.31
VPS53-212ENST00000572259 TRIM75PA6NK02 468 aa6.86□□□□□ -1.31
VPS53-212ENST00000572259 RASA4BC9J798 803 aa6.86□□□□□ -1.31
VPS53-212ENST00000572259 NKRFO15226 690 aaKnown RBP eCLIP6.86□□□□□ -1.31
VPS53-212ENST00000572259 RASA4O43374 803 aa6.86□□□□□ -1.31
VPS53-212ENST00000572259 GAS7O60861 476 aa6.86□□□□□ -1.31
VPS53-212ENST00000572259 PAPLNO95428 1278 aa6.86□□□□□ -1.31
VPS53-212ENST00000572259 HLA-DOAP06340 250 aa6.86□□□□□ -1.31
VPS53-212ENST00000572259 IL2P60568 153 aa6.86□□□□□ -1.31
VPS53-212ENST00000572259 LACTBP83111 547 aaPredicted RBP6.86□□□□□ -1.31
VPS53-212ENST00000572259 MPP1Q00013 466 aa6.86□□□□□ -1.31
VPS53-212ENST00000572259 TNFAIP2Q03169 654 aa6.86□□□□□ -1.31
VPS53-212ENST00000572259 ARHGAP44Q17R89 818 aa6.86□□□□□ -1.31
VPS53-212ENST00000572259 RRP12Q5JTH9 1297 aaKnown RBP6.86□□□□□ -1.31
VPS53-212ENST00000572259 SLC9C2Q5TAH2 1124 aa6.86□□□□□ -1.31
VPS53-212ENST00000572259 ANKRD45Q5TZF3 282 aa6.86□□□□□ -1.31
VPS53-212ENST00000572259 RETSATQ6NUM9 610 aa6.86□□□□□ -1.31
VPS53-212ENST00000572259 RPTNQ6XPR3 784 aa6.86□□□□□ -1.31
VPS53-212ENST00000572259 C4orf50Q6ZRC1 276 aa6.86□□□□□ -1.31
VPS53-212ENST00000572259 MIGA2Q7L4E1 593 aa6.86□□□□□ -1.31
VPS53-212ENST00000572259 NLGN4XQ8N0W4 816 aa6.86□□□□□ -1.31
VPS53-212ENST00000572259 FAM26EQ8N5C1 309 aa6.86□□□□□ -1.31
VPS53-212ENST00000572259 FAM193BQ96PV7 902 aaPredicted RBP6.86□□□□□ -1.31
VPS53-212ENST00000572259 WRNIP1Q96S55 665 aa6.86□□□□□ -1.31
VPS53-212ENST00000572259 MYCBPQ99417 103 aaPredicted RBP6.86□□□□□ -1.31
VPS53-212ENST00000572259 NELL2Q99435 816 aa6.86□□□□□ -1.31
VPS53-212ENST00000572259 BOLA2Q9H3K6 86 aa6.86□□□□□ -1.31
VPS53-212ENST00000572259 PAG1Q9NWQ8 432 aa6.86□□□□□ -1.31
VPS53-212ENST00000572259 PI4KBQ9UBF8 816 aa6.86□□□□□ -1.31
VPS53-212ENST00000572259 FBXO10Q9UK96 956 aa6.86□□□□□ -1.31
VPS53-212ENST00000572259 NAP1L2Q9ULW6 460 aaPredicted RBP6.86□□□□□ -1.31
VPS53-212ENST00000572259 PCDHB4Q9Y5E5 795 aa6.86□□□□□ -1.31
VPS53-212ENST00000572259 MYH1P12882 1939 aa6.86□□□□□ -1.31
VPS53-212ENST00000572259 MYH7P12883 1935 aa6.86□□□□□ -1.31
VPS53-212ENST00000572259 AOX1Q06278 1338 aa6.85□□□□□ -1.31
VPS53-212ENST00000572259 TTC41PQ6P2S7 1318 aa6.85□□□□□ -1.31
VPS53-212ENST00000572259 CBX4O00257 560 aa6.85□□□□□ -1.31
VPS53-212ENST00000572259 SLC27A2O14975 620 aa6.85□□□□□ -1.31
VPS53-212ENST00000572259 FOXN1O15353 648 aa6.85□□□□□ -1.31
VPS53-212ENST00000572259 SGSM2O43147 1006 aa6.85□□□□□ -1.31
VPS53-212ENST00000572259 OFD1O75665 1012 aa6.85□□□□□ -1.31
VPS53-212ENST00000572259 SCP2P22307 547 aa6.85□□□□□ -1.31
VPS53-212ENST00000572259 AKAP5P24588 427 aa6.85□□□□□ -1.31
VPS53-212ENST00000572259 ADCYAP1R1P41586 468 aa6.85□□□□□ -1.31
VPS53-212ENST00000572259 RAD52P43351 418 aa6.85□□□□□ -1.31
VPS53-212ENST00000572259 STT3AP46977 705 aa6.85□□□□□ -1.31
VPS53-212ENST00000572259 MAPKAPK2P49137 400 aa6.85□□□□□ -1.31
VPS53-212ENST00000572259 JAM2P57087 298 aa6.85□□□□□ -1.31
VPS53-212ENST00000572259 PRR5P85299 388 aa6.85□□□□□ -1.31
VPS53-212ENST00000572259 PFKPQ01813 784 aa6.85□□□□□ -1.31
VPS53-212ENST00000572259 ZC3H14Q6PJT7 736 aaKnown RBP6.85□□□□□ -1.31
VPS53-212ENST00000572259 GPR155Q7Z3F1 870 aa6.85□□□□□ -1.31
VPS53-212ENST00000572259 TBC1D1Q86TI0 1168 aaPredicted RBP6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms