RNA–Protein interactions for RNA: ENST00000552828.5

CKAP4-202, Transcript of cytoskeleton associated protein 4, humanhuman

TSL 3

Gene CKAP4, Length 831 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-202ENST00000552828 TBX20Q9UMR3 447 aa12.85□□□□□ -0.35
CKAP4-202ENST00000552828 SLC27A5Q9Y2P5 690 aa12.85□□□□□ -0.35
CKAP4-202ENST00000552828 MTMR11A4FU01 709 aa12.84□□□□□ -0.35
CKAP4-202ENST00000552828 K7ESF4 209 aa12.84□□□□□ -0.35
CKAP4-202ENST00000552828 PIRO00625 290 aa12.84□□□□□ -0.35
CKAP4-202ENST00000552828 PPEF2O14830 753 aa12.84□□□□□ -0.35
CKAP4-202ENST00000552828 OGTO15294 1046 aa12.84□□□□□ -0.35
CKAP4-202ENST00000552828 HOXA6P31267 233 aa12.84□□□□□ -0.35
CKAP4-202ENST00000552828 CNR2P34972 360 aa12.84□□□□□ -0.35
CKAP4-202ENST00000552828 MATR3P43243 847 aaKnown RBP eCLIP12.84□□□□□ -0.35
CKAP4-202ENST00000552828 LIG4P49917 911 aa12.84□□□□□ -0.35
CKAP4-202ENST00000552828 GUCY2FP51841 1108 aa12.84□□□□□ -0.35
CKAP4-202ENST00000552828 PKP1Q13835 747 aa12.84□□□□□ -0.35
CKAP4-202ENST00000552828 PTPAQ15257 358 aa12.84□□□□□ -0.35
CKAP4-202ENST00000552828 DGKKQ5KSL6 1271 aa12.84□□□□□ -0.35
CKAP4-202ENST00000552828 STXBP5Q5T5C0 1151 aa12.84□□□□□ -0.35
CKAP4-202ENST00000552828 DSTYKQ6XUX3 929 aa12.84□□□□□ -0.35
CKAP4-202ENST00000552828 RALGPS2Q86X27 583 aaPredicted RBP12.84□□□□□ -0.35
CKAP4-202ENST00000552828 SYNPOQ8N3V7 929 aa12.84□□□□□ -0.35
CKAP4-202ENST00000552828 BICD1Q96G01 975 aa12.84□□□□□ -0.35
CKAP4-202ENST00000552828 USP28Q96RU2 1077 aa12.84□□□□□ -0.35
CKAP4-202ENST00000552828 PLIN2Q99541 437 aa12.84□□□□□ -0.35
CKAP4-202ENST00000552828 RPF1Q9H9Y2 349 aaKnown RBP12.84□□□□□ -0.35
CKAP4-202ENST00000552828 CPSF3Q9UKF6 684 aaKnown RBP12.84□□□□□ -0.35
CKAP4-202ENST00000552828 RAB23Q9ULC3 237 aa12.84□□□□□ -0.35
CKAP4-202ENST00000552828 USP18Q9UMW8 372 aa12.84□□□□□ -0.35
CKAP4-202ENST00000552828 DERAQ9Y315 318 aa12.84□□□□□ -0.35
CKAP4-202ENST00000552828 CITO14578 2027 aa12.83□□□□□ -0.36
CKAP4-202ENST00000552828 ANO9A1A5B4 782 aa12.83□□□□□ -0.36
CKAP4-202ENST00000552828 SLC38A8A6NNN8 435 aa12.83□□□□□ -0.36
CKAP4-202ENST00000552828 SPECC1L-ADORA2AF8WAN1 911 aa12.83□□□□□ -0.36
CKAP4-202ENST00000552828 HNRNPDLO14979 420 aaKnown RBP12.83□□□□□ -0.36
CKAP4-202ENST00000552828 HRO43593 1189 aa12.83□□□□□ -0.36
CKAP4-202ENST00000552828 CYP11A1P05108 521 aa12.83□□□□□ -0.36
CKAP4-202ENST00000552828 ODC1P11926 461 aa12.83□□□□□ -0.36
CKAP4-202ENST00000552828 CTHP32929 405 aa12.83□□□□□ -0.36
CKAP4-202ENST00000552828 LONP1P36776 959 aaKnown RBP12.83□□□□□ -0.36
CKAP4-202ENST00000552828 UBA7P41226 1012 aa12.83□□□□□ -0.36
CKAP4-202ENST00000552828 SOX9P48436 509 aa12.83□□□□□ -0.36
CKAP4-202ENST00000552828 TUFMP49411 452 aaKnown RBP12.83□□□□□ -0.36
CKAP4-202ENST00000552828 KPNA1P52294 538 aaPredicted RBP12.83□□□□□ -0.36
CKAP4-202ENST00000552828 CACNB1Q02641 598 aaPredicted RBP12.83□□□□□ -0.36
CKAP4-202ENST00000552828 SPEM2Q0P670 501 aa12.83□□□□□ -0.36
CKAP4-202ENST00000552828 CCINQ13939 588 aa12.83□□□□□ -0.36
CKAP4-202ENST00000552828 SLC39A14Q15043 492 aa12.83□□□□□ -0.36
CKAP4-202ENST00000552828 ARHGAP29Q52LW3 1261 aa12.83□□□□□ -0.36
CKAP4-202ENST00000552828 C9orf57Q5W0N0 161 aa12.83□□□□□ -0.36
CKAP4-202ENST00000552828 ATL3Q6DD88 541 aa12.83□□□□□ -0.36
CKAP4-202ENST00000552828 ARMCX5Q6P1M9 558 aa12.83□□□□□ -0.36
CKAP4-202ENST00000552828 SLC39A4Q6P5W5 647 aa12.83□□□□□ -0.36
CKAP4-202ENST00000552828 TXNDC11Q6PKC3 985 aa12.83□□□□□ -0.36
CKAP4-202ENST00000552828 ITIH5Q86UX2 942 aa12.83□□□□□ -0.36
CKAP4-202ENST00000552828 LONP2Q86WA8 852 aa12.83□□□□□ -0.36
CKAP4-202ENST00000552828 OR10T2Q8NGX3 314 aa12.83□□□□□ -0.36
CKAP4-202ENST00000552828 LRRC15Q8TF66 581 aa12.83□□□□□ -0.36
CKAP4-202ENST00000552828 CDK5RAP3Q96JB5 506 aa12.83□□□□□ -0.36
CKAP4-202ENST00000552828 SENP8Q96LD8 212 aa12.83□□□□□ -0.36
CKAP4-202ENST00000552828 REEP2Q9BRK0 252 aa12.83□□□□□ -0.36
CKAP4-202ENST00000552828 ABCD1P33897 745 aa12.82□□□□□ -0.36
CKAP4-202ENST00000552828 NASPP49321 788 aaPredicted RBP12.82□□□□□ -0.36
CKAP4-202ENST00000552828 GTF2BQ00403 316 aa12.82□□□□□ -0.36
CKAP4-202ENST00000552828 PLCB2Q00722 1185 aa12.82□□□□□ -0.36
CKAP4-202ENST00000552828 POU5F1Q01860 360 aaKnown RBP12.82□□□□□ -0.36
CKAP4-202ENST00000552828 DMWDQ09019 674 aa12.82□□□□□ -0.36
CKAP4-202ENST00000552828 SIM2Q14190 667 aaPredicted RBP12.82□□□□□ -0.36
CKAP4-202ENST00000552828 STK38Q15208 465 aa12.82□□□□□ -0.36
CKAP4-202ENST00000552828 CSRP2Q16527 193 aa12.82□□□□□ -0.36
CKAP4-202ENST00000552828 LPAL2Q16609 132 aa12.82□□□□□ -0.36
CKAP4-202ENST00000552828 FOXD4L6Q3SYB3 417 aaPredicted RBP12.82□□□□□ -0.36
CKAP4-202ENST00000552828 JADE1Q6IE81 842 aa12.82□□□□□ -0.36
CKAP4-202ENST00000552828 FOXD4L3Q6VB84 417 aaPredicted RBP12.82□□□□□ -0.36
CKAP4-202ENST00000552828 TTC9BQ8N6N2 239 aa12.82□□□□□ -0.36
CKAP4-202ENST00000552828 NETO1Q8TDF5 533 aa12.82□□□□□ -0.36
CKAP4-202ENST00000552828 CNTNAP3BQ96NU0 1288 aa12.82□□□□□ -0.36
CKAP4-202ENST00000552828 TMEM209Q96SK2 561 aa12.82□□□□□ -0.36
CKAP4-202ENST00000552828 FIZ1Q96SL8 496 aa12.82□□□□□ -0.36
CKAP4-202ENST00000552828 MSTO1Q9BUK6 570 aa12.82□□□□□ -0.36
CKAP4-202ENST00000552828 CNTNAP3Q9BZ76 1288 aa12.82□□□□□ -0.36
CKAP4-202ENST00000552828 ZCWPW1Q9H0M4 648 aa12.82□□□□□ -0.36
CKAP4-202ENST00000552828 ATXN3LQ9H3M9 355 aa12.82□□□□□ -0.36
CKAP4-202ENST00000552828 TASP1Q9H6P5 420 aa12.82□□□□□ -0.36
CKAP4-202ENST00000552828 IL21Q9HBE4 155 aa12.82□□□□□ -0.36
CKAP4-202ENST00000552828 PARVGQ9HBI0 331 aa12.82□□□□□ -0.36
CKAP4-202ENST00000552828 RBM12Q9NTZ6 932 aaKnown RBP12.82□□□□□ -0.36
CKAP4-202ENST00000552828 BLOC1S4Q9NUP1 217 aa12.82□□□□□ -0.36
CKAP4-202ENST00000552828 GTSE1Q9NYZ3 720 aa12.82□□□□□ -0.36
CKAP4-202ENST00000552828 TFIP11Q9UBB9 837 aaKnown RBP12.82□□□□□ -0.36
CKAP4-202ENST00000552828 DSEQ9UL01 958 aa12.82□□□□□ -0.36
CKAP4-202ENST00000552828 SRPRBQ9Y5M8 271 aaKnown RBP12.82□□□□□ -0.36
CKAP4-202ENST00000552828 STYXL1Q9Y6J8 313 aa12.82□□□□□ -0.36
CKAP4-202ENST00000552828 MORC2Q9Y6X9 1032 aaPredicted RBP12.82□□□□□ -0.36
CKAP4-202ENST00000552828 CHD8Q9HCK8 2581 aa12.82□□□□□ -0.36
CKAP4-202ENST00000552828 PDCD11Q14690 1871 aaKnown RBP12.82□□□□□ -0.36
CKAP4-202ENST00000552828 ZFHX4Q86UP3 3567 aa12.82□□□□□ -0.36
CKAP4-202ENST00000552828 DCDC2BA2VCK2 349 aa12.81□□□□□ -0.36
CKAP4-202ENST00000552828 CHURC1-FNTBB4DL54 471 aa12.81□□□□□ -0.36
CKAP4-202ENST00000552828 DPYSL4O14531 572 aa12.81□□□□□ -0.36
CKAP4-202ENST00000552828 SLC30A4O14863 429 aa12.81□□□□□ -0.36
CKAP4-202ENST00000552828 TRAK2O60296 914 aa12.81□□□□□ -0.36
CKAP4-202ENST00000552828 FOXD2O60548 495 aaPredicted RBP12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms