RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 GSTA2P09210 222 aa16.47■□□□□ 0.23
CUX1-211ENST00000546411 ZSCAN5DPP0CG00 497 aa16.47■□□□□ 0.23
CUX1-211ENST00000546411 DSG3P32926 999 aa16.47■□□□□ 0.23
CUX1-211ENST00000546411 RBP5P82980 135 aa16.47■□□□□ 0.23
CUX1-211ENST00000546411 ZNF677Q86XU0 584 aa16.47■□□□□ 0.23
CUX1-211ENST00000546411 MAP4K3Q8IVH8 894 aa16.47■□□□□ 0.23
CUX1-211ENST00000546411 SCFD2Q8WU76 684 aa16.47■□□□□ 0.23
CUX1-211ENST00000546411 CCT6BQ92526 530 aa16.47■□□□□ 0.23
CUX1-211ENST00000546411 MRIQ9BWK5 157 aa16.47■□□□□ 0.23
CUX1-211ENST00000546411 RASSF10A6NK89 507 aa16.47■□□□□ 0.23
CUX1-211ENST00000546411 GIPC1O14908 333 aa16.47■□□□□ 0.23
CUX1-211ENST00000546411 ATP9BO43861 1147 aa16.47■□□□□ 0.23
CUX1-211ENST00000546411 ASPHQ12797 758 aa16.47■□□□□ 0.23
CUX1-211ENST00000546411 NR1H3Q13133 447 aa16.47■□□□□ 0.23
CUX1-211ENST00000546411 MYBPC2Q14324 1141 aa16.47■□□□□ 0.23
CUX1-211ENST00000546411 COBLL1Q53SF7 1204 aa16.47■□□□□ 0.23
CUX1-211ENST00000546411 OR6J1Q8NGC5 347 aa16.47■□□□□ 0.23
CUX1-211ENST00000546411 ERAP1Q9NZ08 941 aa16.47■□□□□ 0.23
CUX1-211ENST00000546411 ARL2BPQ9Y2Y0 163 aa16.47■□□□□ 0.23
CUX1-211ENST00000546411 CFLARO15519 480 aa16.47■□□□□ 0.23
CUX1-211ENST00000546411 DCTN3O75935 186 aa16.47■□□□□ 0.23
CUX1-211ENST00000546411 MOCS2O96007 188 aaPredicted RBP16.47■□□□□ 0.23
CUX1-211ENST00000546411 CTCFP49711 727 aaPredicted RBP16.47■□□□□ 0.23
CUX1-211ENST00000546411 ARFIP2P53365 341 aa16.47■□□□□ 0.23
CUX1-211ENST00000546411 OTUD4Q01804 1114 aaKnown RBP16.47■□□□□ 0.23
CUX1-211ENST00000546411 ACOT1Q86TX2 421 aa16.47■□□□□ 0.23
CUX1-211ENST00000546411 ABRAQ8N0Z2 381 aa16.47■□□□□ 0.23
CUX1-211ENST00000546411 ACTL9Q8TC94 416 aa16.47■□□□□ 0.23
CUX1-211ENST00000546411 FAM167BQ9BTA0 163 aa16.47■□□□□ 0.23
CUX1-211ENST00000546411 PARP4Q9UKK3 1724 aaKnown RBP16.47■□□□□ 0.23
CUX1-211ENST00000546411 ASTN2O75129 1339 aaPredicted RBP16.47■□□□□ 0.23
CUX1-211ENST00000546411 ASB14A6NK59 587 aa16.46■□□□□ 0.23
CUX1-211ENST00000546411 NPTXRO95502 500 aa16.46■□□□□ 0.23
CUX1-211ENST00000546411 SEMA4DQ92854 862 aa16.46■□□□□ 0.23
CUX1-211ENST00000546411 P2RX7Q99572 595 aaKnown RBP16.46■□□□□ 0.23
CUX1-211ENST00000546411 NT5C1AQ9BXI3 368 aa16.46■□□□□ 0.23
CUX1-211ENST00000546411 SMYD3Q9H7B4 428 aa16.46■□□□□ 0.23
CUX1-211ENST00000546411 CTNNAL1Q9UBT7 734 aa16.46■□□□□ 0.23
CUX1-211ENST00000546411 NR2E1Q9Y466 385 aa16.46■□□□□ 0.23
CUX1-211ENST00000546411 A0A087WZ62 844 aa16.46■□□□□ 0.23
CUX1-211ENST00000546411 NUMBP49757 651 aa16.46■□□□□ 0.23
CUX1-211ENST00000546411 TAP1Q03518 808 aa16.46■□□□□ 0.23
CUX1-211ENST00000546411 CACNB2Q08289 660 aaPredicted RBP16.46■□□□□ 0.23
CUX1-211ENST00000546411 C11orf63Q6NUN7 778 aa16.46■□□□□ 0.23
CUX1-211ENST00000546411 ZNF662Q6ZS27 426 aa16.46■□□□□ 0.23
CUX1-211ENST00000546411 FDXACB1Q9BRP7 624 aaPredicted RBP16.46■□□□□ 0.23
CUX1-211ENST00000546411 ZC3H7BQ9UGR2 993 aaKnown RBP16.46■□□□□ 0.23
CUX1-211ENST00000546411 AJAP1Q9UKB5 411 aaPredicted RBP16.46■□□□□ 0.23
CUX1-211ENST00000546411 SNED1Q8TER0 1413 aa16.46■□□□□ 0.23
CUX1-211ENST00000546411 CCT8L1PA6NM43 557 aa16.46■□□□□ 0.23
CUX1-211ENST00000546411 F8VP50 259 aa16.46■□□□□ 0.23
CUX1-211ENST00000546411 APOL1O14791 398 aa16.46■□□□□ 0.23
CUX1-211ENST00000546411 RRP1BQ14684 758 aaKnown RBP16.46■□□□□ 0.23
CUX1-211ENST00000546411 MFSD7Q6UXD7 560 aa16.46■□□□□ 0.23
CUX1-211ENST00000546411 SYDE1Q6ZW31 735 aaPredicted RBP16.46■□□□□ 0.23
CUX1-211ENST00000546411 CRLF3Q8IUI8 442 aa16.46■□□□□ 0.23
CUX1-211ENST00000546411 NUDCD3Q8IVD9 361 aa16.46■□□□□ 0.23
CUX1-211ENST00000546411 RYBPQ8N488 228 aaPredicted RBP16.46■□□□□ 0.23
CUX1-211ENST00000546411 PRELID2Q8N945 189 aa16.46■□□□□ 0.23
CUX1-211ENST00000546411 IGLV3-22A0A075B6J6 115 aa16.46■□□□□ 0.22
CUX1-211ENST00000546411 HBP1O60381 514 aa16.46■□□□□ 0.22
CUX1-211ENST00000546411 GJB1P08034 283 aa16.46■□□□□ 0.22
CUX1-211ENST00000546411 PTPRAP18433 802 aa16.46■□□□□ 0.22
CUX1-211ENST00000546411 KRT4P19013 534 aa16.46■□□□□ 0.22
CUX1-211ENST00000546411 LAMTOR4Q0VGL1 99 aa16.46■□□□□ 0.22
CUX1-211ENST00000546411 RPS6KA2Q15349 733 aa16.46■□□□□ 0.22
CUX1-211ENST00000546411 SPOUT1Q5T280 376 aaKnown RBP16.46■□□□□ 0.22
CUX1-211ENST00000546411 LVRNQ6Q4G3 990 aa16.46■□□□□ 0.22
CUX1-211ENST00000546411 FASTKD5Q7L8L6 764 aaKnown RBP16.46■□□□□ 0.22
CUX1-211ENST00000546411 ERVK-5Q9HDB9 667 aa16.46■□□□□ 0.22
CUX1-211ENST00000546411 UBN1Q9NPG3 1134 aa16.46■□□□□ 0.22
CUX1-211ENST00000546411 HAUS5O94927 633 aa16.45■□□□□ 0.22
CUX1-211ENST00000546411 CCNE2O96020 404 aa16.45■□□□□ 0.22
CUX1-211ENST00000546411 GCKP35557 465 aa16.45■□□□□ 0.22
CUX1-211ENST00000546411 RSPH3Q86UC2 560 aa16.45■□□□□ 0.22
CUX1-211ENST00000546411 CGRRF1Q99675 332 aa16.45■□□□□ 0.22
CUX1-211ENST00000546411 PDGFDQ9GZP0 370 aaPredicted RBP16.45■□□□□ 0.22
CUX1-211ENST00000546411 SPATC1LQ9H0A9 340 aa16.45■□□□□ 0.22
CUX1-211ENST00000546411 WRAP73Q9P2S5 460 aaPredicted RBP16.45■□□□□ 0.22
CUX1-211ENST00000546411 UBIAD1Q9Y5Z9 338 aa16.45■□□□□ 0.22
CUX1-211ENST00000546411 HNRNPH1P31943 449 aaKnown RBP16.45■□□□□ 0.22
CUX1-211ENST00000546411 RAB3IL1Q8TBN0 382 aa16.45■□□□□ 0.22
CUX1-211ENST00000546411 POLIQ9UNA4 740 aa16.45■□□□□ 0.22
CUX1-211ENST00000546411 PCDHA3Q9Y5H8 950 aa16.45■□□□□ 0.22
CUX1-211ENST00000546411 GPC4O75487 556 aa16.45■□□□□ 0.22
CUX1-211ENST00000546411 EPHB1P54762 984 aa16.45■□□□□ 0.22
CUX1-211ENST00000546411 GTF2BQ00403 316 aa16.45■□□□□ 0.22
CUX1-211ENST00000546411 FMO1Q01740 532 aa16.45■□□□□ 0.22
CUX1-211ENST00000546411 PRPSAP1Q14558 356 aa16.45■□□□□ 0.22
CUX1-211ENST00000546411 PPP1R36Q96LQ0 422 aa16.45■□□□□ 0.22
CUX1-211ENST00000546411 SLC40A1Q9NP59 571 aa16.45■□□□□ 0.22
CUX1-211ENST00000546411 RIPK2O43353 540 aa16.44■□□□□ 0.22
CUX1-211ENST00000546411 METTL23Q86XA0 190 aa16.44■□□□□ 0.22
CUX1-211ENST00000546411 OR5B17Q8NGF7 314 aa16.44■□□□□ 0.22
CUX1-211ENST00000546411 ASAP3Q8TDY4 903 aa16.44■□□□□ 0.22
CUX1-211ENST00000546411 COPS5Q92905 334 aa16.44■□□□□ 0.22
CUX1-211ENST00000546411 PCDHB18PQ96TA0 734 aa16.44■□□□□ 0.22
CUX1-211ENST00000546411 CD248Q9HCU0 757 aa16.44■□□□□ 0.22
CUX1-211ENST00000546411 PRMT7Q9NVM4 692 aaPredicted RBP16.44■□□□□ 0.22
CUX1-211ENST00000546411 KIF22Q14807 665 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms