RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 KIF12Q96FN5 646 aa15.24■□□□□ 0.03
VPS33A-209ENST00000544349 SNX27Q96L92 541 aa15.24■□□□□ 0.03
VPS33A-209ENST00000544349 TRIM6Q9C030 488 aaPredicted RBP15.24■□□□□ 0.03
VPS33A-209ENST00000544349 VRTNQ9H8Y1 702 aa15.24■□□□□ 0.03
VPS33A-209ENST00000544349 DPP3Q9NY33 737 aa15.24■□□□□ 0.03
VPS33A-209ENST00000544349 NXF1Q9UBU9 619 aaKnown RBP15.24■□□□□ 0.03
VPS33A-209ENST00000544349 POLIQ9UNA4 740 aa15.24■□□□□ 0.03
VPS33A-209ENST00000544349 DERAQ9Y315 318 aa15.24■□□□□ 0.03
VPS33A-209ENST00000544349 HES2Q9Y543 173 aa15.24■□□□□ 0.03
VPS33A-209ENST00000544349 CDY2AQ9Y6F7 541 aa15.24■□□□□ 0.03
VPS33A-209ENST00000544349 M0QZ92 97 aa15.23■□□□□ 0.03
VPS33A-209ENST00000544349 KRIT1O00522 736 aa15.23■□□□□ 0.03
VPS33A-209ENST00000544349 SART1O43290 800 aaKnown RBP15.23■□□□□ 0.03
VPS33A-209ENST00000544349 CYP1A1P04798 512 aaPredicted RBP15.23■□□□□ 0.03
VPS33A-209ENST00000544349 WEE2P0C1S8 567 aa15.23■□□□□ 0.03
VPS33A-209ENST00000544349 CD58P19256 250 aa15.23■□□□□ 0.03
VPS33A-209ENST00000544349 POLR2BP30876 1174 aaKnown RBP15.23■□□□□ 0.03
VPS33A-209ENST00000544349 YARSP54577 528 aaKnown RBP15.23■□□□□ 0.03
VPS33A-209ENST00000544349 HADHBP55084 474 aaKnown RBP15.23■□□□□ 0.03
VPS33A-209ENST00000544349 WDR72Q3MJ13 1102 aa15.23■□□□□ 0.03
VPS33A-209ENST00000544349 UBXN11Q5T124 520 aa15.23■□□□□ 0.03
VPS33A-209ENST00000544349 NAA35Q5VZE5 725 aa15.23■□□□□ 0.03
VPS33A-209ENST00000544349 KCTD16Q68DU8 428 aa15.23■□□□□ 0.03
VPS33A-209ENST00000544349 SERINC5Q86VE9 423 aa15.23■□□□□ 0.03
VPS33A-209ENST00000544349 FAM228AQ86W67 206 aa15.23■□□□□ 0.03
VPS33A-209ENST00000544349 SYCE1Q8N0S2 351 aa15.23■□□□□ 0.03
VPS33A-209ENST00000544349 WNT8BQ93098 351 aa15.23■□□□□ 0.03
VPS33A-209ENST00000544349 CALR3Q96L12 384 aaKnown RBP15.23■□□□□ 0.03
VPS33A-209ENST00000544349 RUFY1Q96T51 708 aa15.23■□□□□ 0.03
VPS33A-209ENST00000544349 BCO2Q9BYV7 579 aa15.23■□□□□ 0.03
VPS33A-209ENST00000544349 CXCL16Q9H2A7 254 aa15.23■□□□□ 0.03
VPS33A-209ENST00000544349 NXF3Q9H4D5 531 aaKnown RBP15.23■□□□□ 0.03
VPS33A-209ENST00000544349 AMACRQ9UHK6 382 aa15.23■□□□□ 0.03
VPS33A-209ENST00000544349 ITGA11Q9UKX5 1188 aa15.23■□□□□ 0.03
VPS33A-209ENST00000544349 TRPV2Q9Y5S1 764 aa15.23■□□□□ 0.03
VPS33A-209ENST00000544349 TULP2O00295 520 aa15.23■□□□□ 0.03
VPS33A-209ENST00000544349 OPA1O60313 960 aa15.23■□□□□ 0.03
VPS33A-209ENST00000544349 YWHAEP62258 255 aaKnown RBP15.23■□□□□ 0.03
VPS33A-209ENST00000544349 CFAP58Q5T655 872 aa15.23■□□□□ 0.03
VPS33A-209ENST00000544349 ALKAL1Q6UXT8 129 aa15.23■□□□□ 0.03
VPS33A-209ENST00000544349 SCARA5Q6ZMJ2 495 aa15.23■□□□□ 0.03
VPS33A-209ENST00000544349 RPAINQ86UA6 219 aa15.23■□□□□ 0.03
VPS33A-209ENST00000544349 WHAMMQ8TF30 809 aa15.23■□□□□ 0.03
VPS33A-209ENST00000544349 CHORDC1Q9UHD1 332 aaPredicted RBP15.23■□□□□ 0.03
VPS33A-209ENST00000544349 AGAP1Q9UPQ3 857 aa15.23■□□□□ 0.03
VPS33A-209ENST00000544349 THAP12O43422 761 aa15.22■□□□□ 0.03
VPS33A-209ENST00000544349 RECQL4O94761 1208 aa15.22■□□□□ 0.03
VPS33A-209ENST00000544349 IVLP07476 585 aa15.22■□□□□ 0.03
VPS33A-209ENST00000544349 HSPA9P38646 679 aaKnown RBP15.22■□□□□ 0.03
VPS33A-209ENST00000544349 RBP5P82980 135 aa15.22■□□□□ 0.03
VPS33A-209ENST00000544349 HTRA3P83110 453 aa15.22■□□□□ 0.03
VPS33A-209ENST00000544349 HLTFQ14527 1009 aaKnown RBP eCLIP15.22■□□□□ 0.03
VPS33A-209ENST00000544349 ZBTB6Q15916 424 aa15.22■□□□□ 0.03
VPS33A-209ENST00000544349 TRIM72Q6ZMU5 477 aa15.22■□□□□ 0.03
VPS33A-209ENST00000544349 RNF180Q86T96 592 aa15.22■□□□□ 0.03
VPS33A-209ENST00000544349 ZNF606Q8WXB4 792 aa15.22■□□□□ 0.03
VPS33A-209ENST00000544349 CYFIP2Q96F07 1278 aa15.22■□□□□ 0.03
VPS33A-209ENST00000544349 ZMAT2Q96NC0 199 aaKnown RBP15.22■□□□□ 0.03
VPS33A-209ENST00000544349 RABEP2Q9H5N1 569 aa15.22■□□□□ 0.03
VPS33A-209ENST00000544349 CWC15Q9P013 229 aaKnown RBP15.22■□□□□ 0.03
VPS33A-209ENST00000544349 CTTNBP2NLQ9P2B4 639 aa15.22■□□□□ 0.03
VPS33A-209ENST00000544349 GTF3C4Q9UKN8 822 aa15.22■□□□□ 0.03
VPS33A-209ENST00000544349 AMFRQ9UKV5 643 aa15.22■□□□□ 0.03
VPS33A-209ENST00000544349 TTI1O43156 1089 aa15.22■□□□□ 0.03
VPS33A-209ENST00000544349 FKTNO75072 461 aa15.22■□□□□ 0.03
VPS33A-209ENST00000544349 STAU1O95793 577 aaKnown RBP15.22■□□□□ 0.03
VPS33A-209ENST00000544349 FGGP02679 453 aa15.22■□□□□ 0.03
VPS33A-209ENST00000544349 CYP1A2P05177 515 aa15.22■□□□□ 0.03
VPS33A-209ENST00000544349 RPLP2P05387 115 aaKnown RBP15.22■□□□□ 0.03
VPS33A-209ENST00000544349 CFHP08603 1231 aa15.22■□□□□ 0.03
VPS33A-209ENST00000544349 FLT3P36888 993 aa15.22■□□□□ 0.03
VPS33A-209ENST00000544349 UAP1Q16222 522 aaPredicted RBP15.22■□□□□ 0.03
VPS33A-209ENST00000544349 AADACL2Q6P093 401 aa15.22■□□□□ 0.03
VPS33A-209ENST00000544349 ALG3Q92685 438 aa15.22■□□□□ 0.03
VPS33A-209ENST00000544349 ZNF653Q96CK0 615 aa15.22■□□□□ 0.03
VPS33A-209ENST00000544349 HPDLQ96IR7 371 aa15.22■□□□□ 0.03
VPS33A-209ENST00000544349 ERVK-5Q9HDB9 667 aa15.22■□□□□ 0.03
VPS33A-209ENST00000544349 CNTN3Q9P232 1028 aa15.22■□□□□ 0.03
VPS33A-209ENST00000544349 PDCD11Q14690 1871 aaKnown RBP15.21■□□□□ 0.03
VPS33A-209ENST00000544349 ATMINO43313 823 aaPredicted RBP15.21■□□□□ 0.03
VPS33A-209ENST00000544349 MTA2O94776 668 aa15.21■□□□□ 0.03
VPS33A-209ENST00000544349 CHRNA1P02708 482 aa15.21■□□□□ 0.03
VPS33A-209ENST00000544349 HSPA6P17066 643 aa15.21■□□□□ 0.03
VPS33A-209ENST00000544349 AKAP5P24588 427 aa15.21■□□□□ 0.03
VPS33A-209ENST00000544349 RAP1GAPP47736 663 aa15.21■□□□□ 0.03
VPS33A-209ENST00000544349 MARCKSL1P49006 195 aa15.21■□□□□ 0.03
VPS33A-209ENST00000544349 CENPCQ03188 943 aa15.21■□□□□ 0.03
VPS33A-209ENST00000544349 ZNF211Q13398 564 aaPredicted RBP15.21■□□□□ 0.03
VPS33A-209ENST00000544349 PTGISQ16647 500 aa15.21■□□□□ 0.03
VPS33A-209ENST00000544349 ZNF394Q53GI3 561 aa15.21■□□□□ 0.03
VPS33A-209ENST00000544349 SRLQ86TD4 932 aa15.21■□□□□ 0.03
VPS33A-209ENST00000544349 CPA5Q8WXQ8 436 aa15.21■□□□□ 0.03
VPS33A-209ENST00000544349 TRIM51Q9BSJ1 452 aa15.21■□□□□ 0.03
VPS33A-209ENST00000544349 APOL6Q9BWW8 343 aa15.21■□□□□ 0.03
VPS33A-209ENST00000544349 SDCBP2Q9H190 292 aa15.21■□□□□ 0.03
VPS33A-209ENST00000544349 PLAAQ9Y263 795 aa15.21■□□□□ 0.03
VPS33A-209ENST00000544349 DAPK3O43293 454 aa15.2■□□□□ 0.02
VPS33A-209ENST00000544349 CABYRO75952 493 aa15.2■□□□□ 0.02
VPS33A-209ENST00000544349 IRAK1P51617 712 aa15.2■□□□□ 0.02
VPS33A-209ENST00000544349 CDH8P55286 799 aa15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms