RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 HDAC6Q9UBN7 1215 aa7.12□□□□□ -1.27
USP28-202ENST00000535607 COA3Q9Y2R0 106 aaPredicted RBP7.12□□□□□ -1.27
USP28-202ENST00000535607 MYH6P13533 1939 aa7.11□□□□□ -1.27
USP28-202ENST00000535607 BRCA1P38398 1863 aaKnown RBP7.11□□□□□ -1.27
USP28-202ENST00000535607 ABCB11O95342 1321 aa7.11□□□□□ -1.27
USP28-202ENST00000535607 CCDC189A1A4V9 331 aa7.11□□□□□ -1.27
USP28-202ENST00000535607 MACROD2A1Z1Q3 448 aa7.11□□□□□ -1.27
USP28-202ENST00000535607 H0YIN7 160 aa7.11□□□□□ -1.27
USP28-202ENST00000535607 GSTA4O15217 222 aa7.11□□□□□ -1.27
USP28-202ENST00000535607 SRGAP2O75044 1071 aa7.11□□□□□ -1.27
USP28-202ENST00000535607 BBOX1O75936 387 aa7.11□□□□□ -1.27
USP28-202ENST00000535607 CAPNS1P04632 268 aa7.11□□□□□ -1.27
USP28-202ENST00000535607 SCP2P22307 547 aa7.11□□□□□ -1.27
USP28-202ENST00000535607 ALDH1B1P30837 517 aa7.11□□□□□ -1.27
USP28-202ENST00000535607 HSPA9P38646 679 aaKnown RBP7.11□□□□□ -1.27
USP28-202ENST00000535607 GDNFP39905 211 aa7.11□□□□□ -1.27
USP28-202ENST00000535607 STAT6P42226 847 aa7.11□□□□□ -1.27
USP28-202ENST00000535607 MTIF2P46199 727 aaKnown RBP7.11□□□□□ -1.27
USP28-202ENST00000535607 NT5C2P49902 561 aa7.11□□□□□ -1.27
USP28-202ENST00000535607 TOB1P50616 345 aaPredicted RBP7.11□□□□□ -1.27
USP28-202ENST00000535607 RWDD2BP57060 319 aa7.11□□□□□ -1.27
USP28-202ENST00000535607 ITIH4Q14624 930 aa7.11□□□□□ -1.27
USP28-202ENST00000535607 PUM3Q15397 648 aaKnown RBP7.11□□□□□ -1.27
USP28-202ENST00000535607 ZRSR2Q15696 482 aaKnown RBP7.11□□□□□ -1.27
USP28-202ENST00000535607 NTRK3Q16288 839 aa7.11□□□□□ -1.27
USP28-202ENST00000535607 PDCD2Q16342 344 aaPredicted RBP7.11□□□□□ -1.27
USP28-202ENST00000535607 PTPN21Q16825 1174 aa7.11□□□□□ -1.27
USP28-202ENST00000535607 TTMPQ5BVD1 217 aa7.11□□□□□ -1.27
USP28-202ENST00000535607 ANKRD20A8PQ5CZ79 823 aa7.11□□□□□ -1.27
USP28-202ENST00000535607 METTL24Q5JXM2 366 aa7.11□□□□□ -1.27
USP28-202ENST00000535607 C10orf76Q5T2E6 689 aa7.11□□□□□ -1.27
USP28-202ENST00000535607 C6orf89Q6UWU4 347 aa7.11□□□□□ -1.27
USP28-202ENST00000535607 MFSD6Q6ZSS7 791 aa7.11□□□□□ -1.27
USP28-202ENST00000535607 UBE2R2Q712K3 238 aaPredicted RBP7.11□□□□□ -1.27
USP28-202ENST00000535607 EGFL6Q8IUX8 553 aa7.11□□□□□ -1.27
USP28-202ENST00000535607 ZC3H7AQ8IWR0 971 aaKnown RBP7.11□□□□□ -1.27
USP28-202ENST00000535607 DHX37Q8IY37 1157 aaKnown RBP7.11□□□□□ -1.27
USP28-202ENST00000535607 LILRA2Q8N149 483 aa7.11□□□□□ -1.27
USP28-202ENST00000535607 VGLL2Q8N8G2 317 aa7.11□□□□□ -1.27
USP28-202ENST00000535607 CCDC197Q8NCU1 140 aa7.11□□□□□ -1.27
USP28-202ENST00000535607 KREMEN2Q8NCW0 462 aa7.11□□□□□ -1.27
USP28-202ENST00000535607 NUP43Q8NFH3 380 aa7.11□□□□□ -1.27
USP28-202ENST00000535607 RASSF8Q8NHQ8 419 aa7.11□□□□□ -1.27
USP28-202ENST00000535607 IGDCC4Q8TDY8 1250 aa7.11□□□□□ -1.27
USP28-202ENST00000535607 CUL5Q93034 780 aa7.11□□□□□ -1.27
USP28-202ENST00000535607 MASTLQ96GX5 879 aa7.11□□□□□ -1.27
USP28-202ENST00000535607 TMEM169Q96HH4 297 aa7.11□□□□□ -1.27
USP28-202ENST00000535607 GDAP1L1Q96MZ0 367 aa7.11□□□□□ -1.27
USP28-202ENST00000535607 FAM210AQ96ND0 272 aa7.11□□□□□ -1.27
USP28-202ENST00000535607 SPAG5Q96R06 1193 aa7.11□□□□□ -1.27
USP28-202ENST00000535607 CHP1Q99653 195 aa7.11□□□□□ -1.27
USP28-202ENST00000535607 UBAC1Q9BSL1 405 aa7.11□□□□□ -1.27
USP28-202ENST00000535607 LRRC1Q9BTT6 524 aa7.11□□□□□ -1.27
USP28-202ENST00000535607 ANKRD2Q9GZV1 360 aa7.11□□□□□ -1.27
USP28-202ENST00000535607 NAPBQ9H115 298 aa7.11□□□□□ -1.27
USP28-202ENST00000535607 SH2D4AQ9H788 454 aa7.11□□□□□ -1.27
USP28-202ENST00000535607 LY9Q9HBG7 655 aa7.11□□□□□ -1.27
USP28-202ENST00000535607 SPC25Q9HBM1 224 aa7.11□□□□□ -1.27
USP28-202ENST00000535607 SAMD15Q9P1V8 674 aa7.11□□□□□ -1.27
USP28-202ENST00000535607 GPR160Q9UJ42 338 aa7.11□□□□□ -1.27
USP28-202ENST00000535607 RIPOR2Q9Y4F9 1068 aa7.11□□□□□ -1.27
USP28-202ENST00000535607 TRAF6Q9Y4K3 522 aa7.11□□□□□ -1.27
USP28-202ENST00000535607 PCDHA13Q9Y5I0 950 aa7.11□□□□□ -1.27
USP28-202ENST00000535607 COL4A1P02462 1669 aa7.1□□□□□ -1.27
USP28-202ENST00000535607 XDHP47989 1333 aa7.1□□□□□ -1.27
USP28-202ENST00000535607 KLHL33A6NCF5 533 aa7.1□□□□□ -1.27
USP28-202ENST00000535607 C5orf60A6NFR6 353 aa7.1□□□□□ -1.27
USP28-202ENST00000535607 FADS2P1A8MWK0 482 aa7.1□□□□□ -1.27
USP28-202ENST00000535607 CCDC188H7C350 402 aa7.1□□□□□ -1.27
USP28-202ENST00000535607 LAD1O00515 517 aa7.1□□□□□ -1.27
USP28-202ENST00000535607 ABLIM1O14639 778 aa7.1□□□□□ -1.27
USP28-202ENST00000535607 PJA2O43164 708 aa7.1□□□□□ -1.27
USP28-202ENST00000535607 TRAPPC3O43617 180 aa7.1□□□□□ -1.27
USP28-202ENST00000535607 MGRN1O60291 552 aa7.1□□□□□ -1.27
USP28-202ENST00000535607 DNAJC6O75061 913 aa7.1□□□□□ -1.27
USP28-202ENST00000535607 HEXIM1O94992 359 aaKnown RBP7.1□□□□□ -1.27
USP28-202ENST00000535607 PDE8BO95263 885 aa7.1□□□□□ -1.27
USP28-202ENST00000535607 LCA5LO95447 670 aa7.1□□□□□ -1.27
USP28-202ENST00000535607 PAEPP09466 180 aa7.1□□□□□ -1.27
USP28-202ENST00000535607 PCP11498 1178 aaKnown RBP7.1□□□□□ -1.27
USP28-202ENST00000535607 ITGB7P26010 798 aa7.1□□□□□ -1.27
USP28-202ENST00000535607 CALML3P27482 149 aa7.1□□□□□ -1.27
USP28-202ENST00000535607 CNGA1P29973 690 aa7.1□□□□□ -1.27
USP28-202ENST00000535607 HNRNPH3P31942 346 aaKnown RBP7.1□□□□□ -1.27
USP28-202ENST00000535607 KIF5BP33176 963 aa7.1□□□□□ -1.27
USP28-202ENST00000535607 ADD2P35612 726 aa7.1□□□□□ -1.27
USP28-202ENST00000535607 MATR3P43243 847 aaKnown RBP eCLIP7.1□□□□□ -1.27
USP28-202ENST00000535607 MAGEA1P43355 309 aa7.1□□□□□ -1.27
USP28-202ENST00000535607 SH3BGRP55822 239 aaPredicted RBP7.1□□□□□ -1.27
USP28-202ENST00000535607 TGFB2P61812 414 aa7.1□□□□□ -1.27
USP28-202ENST00000535607 TIMM10P62072 90 aa7.1□□□□□ -1.27
USP28-202ENST00000535607 RPS8P62241 208 aaKnown RBP7.1□□□□□ -1.27
USP28-202ENST00000535607 TRAF1Q13077 416 aa7.1□□□□□ -1.27
USP28-202ENST00000535607 LSAMPQ13449 338 aa7.1□□□□□ -1.27
USP28-202ENST00000535607 CBX2Q14781 532 aaPredicted RBP7.1□□□□□ -1.27
USP28-202ENST00000535607 ZNF792Q3KQV3 632 aa7.1□□□□□ -1.27
USP28-202ENST00000535607 TRIM61Q5EBN2 209 aa7.1□□□□□ -1.27
USP28-202ENST00000535607 FAM47CQ5HY64 1035 aa7.1□□□□□ -1.27
USP28-202ENST00000535607 TTC38Q5R3I4 469 aa7.1□□□□□ -1.27
USP28-202ENST00000535607 HAUS3Q68CZ6 603 aa7.1□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms