RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 OGTO15294 1046 aa8.69□□□□□ -1.02
SCN1A-207ENST00000507401 ADAM12O43184 909 aa8.69□□□□□ -1.02
SCN1A-207ENST00000507401 XPOTO43592 962 aaKnown RBP8.69□□□□□ -1.02
SCN1A-207ENST00000507401 FAM189A1O60320 539 aa8.69□□□□□ -1.02
SCN1A-207ENST00000507401 TBC1D4O60343 1298 aa8.69□□□□□ -1.02
SCN1A-207ENST00000507401 XYLBO75191 536 aa8.69□□□□□ -1.02
SCN1A-207ENST00000507401 C8AP07357 584 aa8.69□□□□□ -1.02
SCN1A-207ENST00000507401 LAMP2P13473 410 aa8.69□□□□□ -1.02
SCN1A-207ENST00000507401 GAP43P17677 238 aa8.69□□□□□ -1.02
SCN1A-207ENST00000507401 IGFBP6P24592 240 aaPredicted RBP8.69□□□□□ -1.02
SCN1A-207ENST00000507401 MARCKSP29966 332 aaPredicted RBP8.69□□□□□ -1.02
SCN1A-207ENST00000507401 AVPR2P30518 371 aa8.69□□□□□ -1.02
SCN1A-207ENST00000507401 LRPAP1P30533 357 aa8.69□□□□□ -1.02
SCN1A-207ENST00000507401 MATR3P43243 847 aaKnown RBP eCLIP8.69□□□□□ -1.02
SCN1A-207ENST00000507401 BRCC3P46736 316 aa8.69□□□□□ -1.02
SCN1A-207ENST00000507401 PPM1LQ5SGD2 360 aa8.69□□□□□ -1.02
SCN1A-207ENST00000507401 LIN9Q5TKA1 542 aa8.69□□□□□ -1.02
SCN1A-207ENST00000507401 FAM173BQ6P4H8 233 aa8.69□□□□□ -1.02
SCN1A-207ENST00000507401 RSPO2Q6UXX9 243 aaPredicted RBP8.69□□□□□ -1.02
SCN1A-207ENST00000507401 MAP4K3Q8IVH8 894 aa8.69□□□□□ -1.02
SCN1A-207ENST00000507401 GLYCTKQ8IVS8 523 aa8.69□□□□□ -1.02
SCN1A-207ENST00000507401 APPL2Q8NEU8 664 aa8.69□□□□□ -1.02
SCN1A-207ENST00000507401 FEZF2Q8TBJ5 459 aa8.69□□□□□ -1.02
SCN1A-207ENST00000507401 C18orf25Q96B23 403 aaPredicted RBP8.69□□□□□ -1.02
SCN1A-207ENST00000507401 HVCN1Q96D96 273 aa8.69□□□□□ -1.02
SCN1A-207ENST00000507401 BICD1Q96G01 975 aa8.69□□□□□ -1.02
SCN1A-207ENST00000507401 SUSD3Q96L08 255 aa8.69□□□□□ -1.02
SCN1A-207ENST00000507401 USP28Q96RU2 1077 aa8.69□□□□□ -1.02
SCN1A-207ENST00000507401 STRA6Q9BX79 667 aa8.69□□□□□ -1.02
SCN1A-207ENST00000507401 HAPLN2Q9GZV7 340 aa8.69□□□□□ -1.02
SCN1A-207ENST00000507401 IRF2BPLQ9H1B7 796 aa8.69□□□□□ -1.02
SCN1A-207ENST00000507401 GOLGA2P5Q9HBQ8 144 aa8.69□□□□□ -1.02
SCN1A-207ENST00000507401 ANKFY1Q9P2R3 1169 aa8.69□□□□□ -1.02
SCN1A-207ENST00000507401 GMPR2Q9P2T1 348 aaKnown RBP8.69□□□□□ -1.02
SCN1A-207ENST00000507401 CPSF3Q9UKF6 684 aaKnown RBP8.69□□□□□ -1.02
SCN1A-207ENST00000507401 UBQLN1Q9UMX0 589 aaKnown RBP8.69□□□□□ -1.02
SCN1A-207ENST00000507401 DERAQ9Y315 318 aa8.69□□□□□ -1.02
SCN1A-207ENST00000507401 CDY1Q9Y6F8 540 aa8.69□□□□□ -1.02
SCN1A-207ENST00000507401 VWA8A3KMH1 1905 aa8.69□□□□□ -1.02
SCN1A-207ENST00000507401 CLUHO75153 1309 aa8.69□□□□□ -1.02
SCN1A-207ENST00000507401 MUC6Q6W4X9 2439 aa8.68□□□□□ -1.02
SCN1A-207ENST00000507401 ARHGEF37A1IGU5 675 aa8.68□□□□□ -1.02
SCN1A-207ENST00000507401 LACTBL1A8MY62 500 aa8.68□□□□□ -1.02
SCN1A-207ENST00000507401 ANHXE9PGG2 379 aa8.68□□□□□ -1.02
SCN1A-207ENST00000507401 K7ENM7 598 aa8.68□□□□□ -1.02
SCN1A-207ENST00000507401 M0QZQ0 153 aa8.68□□□□□ -1.02
SCN1A-207ENST00000507401 CLGNO14967 610 aa8.68□□□□□ -1.02
SCN1A-207ENST00000507401 N4BP1O75113 896 aaKnown RBP8.68□□□□□ -1.02
SCN1A-207ENST00000507401 PPP6R2O75170 966 aa8.68□□□□□ -1.02
SCN1A-207ENST00000507401 OAZ2O95190 189 aa8.68□□□□□ -1.02
SCN1A-207ENST00000507401 ASGR2P07307 311 aa8.68□□□□□ -1.02
SCN1A-207ENST00000507401 HARSP12081 509 aaKnown RBP8.68□□□□□ -1.02
SCN1A-207ENST00000507401 ATF2P15336 505 aa8.68□□□□□ -1.02
SCN1A-207ENST00000507401 TKTP29401 623 aaKnown RBP8.68□□□□□ -1.02
SCN1A-207ENST00000507401 NMT1P30419 496 aaKnown RBP8.68□□□□□ -1.02
SCN1A-207ENST00000507401 GBP2P32456 591 aaPredicted RBP8.68□□□□□ -1.02
SCN1A-207ENST00000507401 CTHP32929 405 aa8.68□□□□□ -1.02
SCN1A-207ENST00000507401 CLCN5P51795 746 aa8.68□□□□□ -1.02
SCN1A-207ENST00000507401 CEBPZQ03701 1054 aaKnown RBP8.68□□□□□ -1.02
SCN1A-207ENST00000507401 PPP2R3AQ06190 1150 aa8.68□□□□□ -1.02
SCN1A-207ENST00000507401 POSTNQ15063 836 aa8.68□□□□□ -1.02
SCN1A-207ENST00000507401 SEZ6Q53EL9 994 aa8.68□□□□□ -1.02
SCN1A-207ENST00000507401 C4orf48Q5BLP8 95 aa8.68□□□□□ -1.02
SCN1A-207ENST00000507401 SPECC1Q5M775 1068 aa8.68□□□□□ -1.02
SCN1A-207ENST00000507401 SPATA1Q5VX52 437 aa8.68□□□□□ -1.02
SCN1A-207ENST00000507401 TPGS2Q68CL5 300 aa8.68□□□□□ -1.02
SCN1A-207ENST00000507401 TCEAL8Q8IYN2 117 aa8.68□□□□□ -1.02
SCN1A-207ENST00000507401 LINC00301Q8NCQ3 95 aa8.68□□□□□ -1.02
SCN1A-207ENST00000507401 DNAJC19Q96DA6 116 aa8.68□□□□□ -1.02
SCN1A-207ENST00000507401 ZNF396Q96N95 335 aaPredicted RBP8.68□□□□□ -1.02
SCN1A-207ENST00000507401 CLIC6Q96NY7 704 aa8.68□□□□□ -1.02
SCN1A-207ENST00000507401 FUCA2Q9BTY2 467 aa8.68□□□□□ -1.02
SCN1A-207ENST00000507401 MSTO1Q9BUK6 570 aa8.68□□□□□ -1.02
SCN1A-207ENST00000507401 LRRC27Q9C0I9 530 aa8.68□□□□□ -1.02
SCN1A-207ENST00000507401 ZHX3Q9H4I2 956 aa8.68□□□□□ -1.02
SCN1A-207ENST00000507401 ASB7Q9H672 318 aa8.68□□□□□ -1.02
SCN1A-207ENST00000507401 RPF1Q9H9Y2 349 aaKnown RBP8.68□□□□□ -1.02
SCN1A-207ENST00000507401 AVENQ9NQS1 362 aaPredicted RBP8.68□□□□□ -1.02
SCN1A-207ENST00000507401 PSD3Q9NYI0 1048 aa8.68□□□□□ -1.02
SCN1A-207ENST00000507401 WNT16Q9UBV4 365 aa8.68□□□□□ -1.02
SCN1A-207ENST00000507401 KCNH3Q9ULD8 1083 aa8.68□□□□□ -1.02
SCN1A-207ENST00000507401 FRMD3A2A2Y4 597 aa8.67□□□□□ -1.02
SCN1A-207ENST00000507401 MYMKA6NI61 221 aa8.67□□□□□ -1.02
SCN1A-207ENST00000507401 I3L4J1 428 aa8.67□□□□□ -1.02
SCN1A-207ENST00000507401 SPTLC2O15270 562 aa8.67□□□□□ -1.02
SCN1A-207ENST00000507401 MICAL2O94851 1124 aa8.67□□□□□ -1.02
SCN1A-207ENST00000507401 ZSCAN22P10073 491 aaPredicted RBP8.67□□□□□ -1.02
SCN1A-207ENST00000507401 CXCL8P10145 99 aa8.67□□□□□ -1.02
SCN1A-207ENST00000507401 MYBP10242 640 aa8.67□□□□□ -1.02
SCN1A-207ENST00000507401 TNNT1P13805 278 aa8.67□□□□□ -1.02
SCN1A-207ENST00000507401 PTPN2P17706 415 aa8.67□□□□□ -1.02
SCN1A-207ENST00000507401 FSHRP23945 695 aa8.67□□□□□ -1.02
SCN1A-207ENST00000507401 VARSP26640 1264 aaKnown RBP8.67□□□□□ -1.02
SCN1A-207ENST00000507401 ELF1P32519 619 aa8.67□□□□□ -1.02
SCN1A-207ENST00000507401 TNFSF9P41273 254 aa8.67□□□□□ -1.02
SCN1A-207ENST00000507401 TNNT3P45378 269 aaPredicted RBP8.67□□□□□ -1.02
SCN1A-207ENST00000507401 AARSP49588 968 aaKnown RBP eCLIP8.67□□□□□ -1.02
SCN1A-207ENST00000507401 GSDMDP57764 484 aa8.67□□□□□ -1.02
SCN1A-207ENST00000507401 ALCAMQ13740 583 aa8.67□□□□□ -1.02
SCN1A-207ENST00000507401 PDCD11Q14690 1871 aaKnown RBP8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 81.3 ms