RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 PSAPL1Q6NUJ1 521 aa12.94□□□□□ -0.34
SQSTM1-206ENST00000466342 FUT10Q6P4F1 479 aa12.94□□□□□ -0.34
SQSTM1-206ENST00000466342 CEP68Q76N32 757 aa12.94□□□□□ -0.34
SQSTM1-206ENST00000466342 MAP4K3Q8IVH8 894 aa12.94□□□□□ -0.34
SQSTM1-206ENST00000466342 FAM3CQ92520 227 aa12.94□□□□□ -0.34
SQSTM1-206ENST00000466342 ARRDC1-AS1Q9H2J1 176 aa12.94□□□□□ -0.34
SQSTM1-206ENST00000466342 PTPRHQ9HD43 1115 aa12.94□□□□□ -0.34
SQSTM1-206ENST00000466342 WASF3Q9UPY6 502 aa12.94□□□□□ -0.34
SQSTM1-206ENST00000466342 AKAP13Q12802 2813 aa12.94□□□□□ -0.34
SQSTM1-206ENST00000466342 IGF2RP11717 2491 aa12.93□□□□□ -0.34
SQSTM1-206ENST00000466342 TAF4O00268 1085 aa12.93□□□□□ -0.34
SQSTM1-206ENST00000466342 PTGESO14684 152 aa12.93□□□□□ -0.34
SQSTM1-206ENST00000466342 HNRNPDLO14979 420 aaKnown RBP12.93□□□□□ -0.34
SQSTM1-206ENST00000466342 TOM1L1O75674 476 aa12.93□□□□□ -0.34
SQSTM1-206ENST00000466342 RPN1P04843 607 aaKnown RBP12.93□□□□□ -0.34
SQSTM1-206ENST00000466342 C8AP07357 584 aa12.93□□□□□ -0.34
SQSTM1-206ENST00000466342 HSP90AA2PQ14568 343 aaPredicted RBP12.93□□□□□ -0.34
SQSTM1-206ENST00000466342 POSTNQ15063 836 aa12.93□□□□□ -0.34
SQSTM1-206ENST00000466342 ZNF568Q3ZCX4 644 aa12.93□□□□□ -0.34
SQSTM1-206ENST00000466342 KMT5BQ4FZB7 885 aa12.93□□□□□ -0.34
SQSTM1-206ENST00000466342 L1TD1Q5T7N2 865 aaKnown RBP12.93□□□□□ -0.34
SQSTM1-206ENST00000466342 TANGO2Q6ICL3 276 aa12.93□□□□□ -0.34
SQSTM1-206ENST00000466342 MPZL3Q6UWV2 235 aa12.93□□□□□ -0.34
SQSTM1-206ENST00000466342 STXBP4Q6ZWJ1 553 aa12.93□□□□□ -0.34
SQSTM1-206ENST00000466342 ELOA2Q8IYF1 753 aaPredicted RBP12.93□□□□□ -0.34
SQSTM1-206ENST00000466342 SPEM1Q8N4L4 309 aa12.93□□□□□ -0.34
SQSTM1-206ENST00000466342 HPS3Q969F9 1004 aa12.93□□□□□ -0.34
SQSTM1-206ENST00000466342 ELSPBP1Q96BH3 223 aa12.93□□□□□ -0.34
SQSTM1-206ENST00000466342 MCRS1Q96EZ8 462 aa12.93□□□□□ -0.34
SQSTM1-206ENST00000466342 BICD1Q96G01 975 aa12.93□□□□□ -0.34
SQSTM1-206ENST00000466342 LOXL4Q96JB6 756 aa12.93□□□□□ -0.34
SQSTM1-206ENST00000466342 FGFBP2Q9BYJ0 223 aa12.93□□□□□ -0.34
SQSTM1-206ENST00000466342 ADAM33Q9BZ11 813 aa12.93□□□□□ -0.34
SQSTM1-206ENST00000466342 BRD9Q9H8M2 597 aa12.93□□□□□ -0.34
SQSTM1-206ENST00000466342 EXOC1Q9NV70 894 aa12.93□□□□□ -0.34
SQSTM1-206ENST00000466342 GDE1Q9NZC3 331 aa12.93□□□□□ -0.34
SQSTM1-206ENST00000466342 DNMT3BQ9UBC3 853 aaKnown RBP12.93□□□□□ -0.34
SQSTM1-206ENST00000466342 PCDHB13Q9Y5F0 798 aa12.93□□□□□ -0.34
SQSTM1-206ENST00000466342 SF3B1O75533 1304 aaKnown RBP eCLIP12.92□□□□□ -0.342e-6■■■■■ 62.6
SQSTM1-206ENST00000466342 GOLGA6L22H0YM25 854 aa12.92□□□□□ -0.34
SQSTM1-206ENST00000466342 ABLIM1O14639 778 aa12.92□□□□□ -0.34
SQSTM1-206ENST00000466342 EIF3DO15371 548 aaKnown RBP eCLIP12.92□□□□□ -0.34
SQSTM1-206ENST00000466342 PAPSS2O95340 614 aaPredicted RBP12.92□□□□□ -0.34
SQSTM1-206ENST00000466342 POU2F2P09086 479 aa12.92□□□□□ -0.34
SQSTM1-206ENST00000466342 MCF2P10911 925 aa12.92□□□□□ -0.34
SQSTM1-206ENST00000466342 CHRNB1P11230 501 aa12.92□□□□□ -0.34
SQSTM1-206ENST00000466342 LIG4P49917 911 aa12.92□□□□□ -0.34
SQSTM1-206ENST00000466342 FOXC1Q12948 553 aa12.92□□□□□ -0.34
SQSTM1-206ENST00000466342 PNOCQ13519 176 aa12.92□□□□□ -0.34
SQSTM1-206ENST00000466342 GAS6Q14393 721 aa12.92□□□□□ -0.34
SQSTM1-206ENST00000466342 NOLC1Q14978 699 aaKnown RBP eCLIP12.92□□□□□ -0.34
SQSTM1-206ENST00000466342 NAB2Q15742 525 aa12.92□□□□□ -0.34
SQSTM1-206ENST00000466342 CCDC6Q16204 474 aa12.92□□□□□ -0.34
SQSTM1-206ENST00000466342 UVSSAQ2YD98 709 aa12.92□□□□□ -0.34
SQSTM1-206ENST00000466342 PABPC1LQ4VXU2 614 aaKnown RBP12.92□□□□□ -0.34
SQSTM1-206ENST00000466342 PRSS55Q6UWB4 352 aaPredicted RBP12.92□□□□□ -0.34
SQSTM1-206ENST00000466342 EPM2AIP1Q7L775 607 aaPredicted RBP12.92□□□□□ -0.34
SQSTM1-206ENST00000466342 GLIS3Q8NEA6 775 aa12.92□□□□□ -0.34
SQSTM1-206ENST00000466342 GATA6Q92908 595 aa12.92□□□□□ -0.34
SQSTM1-206ENST00000466342 CCDC47Q96A33 483 aaKnown RBP12.92□□□□□ -0.34
SQSTM1-206ENST00000466342 ACCSQ96QU6 501 aa12.92□□□□□ -0.34
SQSTM1-206ENST00000466342 CLSTN3Q9BQT9 956 aa12.92□□□□□ -0.34
SQSTM1-206ENST00000466342 CDT1Q9H211 546 aa12.92□□□□□ -0.34
SQSTM1-206ENST00000466342 LMBRD1Q9NUN5 540 aa12.92□□□□□ -0.34
SQSTM1-206ENST00000466342 HCFC1R1Q9NWW0 138 aa12.92□□□□□ -0.34
SQSTM1-206ENST00000466342 ANKFY1Q9P2R3 1169 aa12.92□□□□□ -0.34
SQSTM1-206ENST00000466342 HOOK1Q9UJC3 728 aaKnown RBP12.92□□□□□ -0.34
SQSTM1-206ENST00000466342 EXOC7Q9UPT5 735 aa12.92□□□□□ -0.34
SQSTM1-206ENST00000466342 GDAQ9Y2T3 454 aa12.92□□□□□ -0.34
SQSTM1-206ENST00000466342 EML5Q05BV3 1969 aa12.92□□□□□ -0.34
SQSTM1-206ENST00000466342 UBE4BO95155 1302 aa12.91□□□□□ -0.34
SQSTM1-206ENST00000466342 K7ESF4 209 aa12.91□□□□□ -0.34
SQSTM1-206ENST00000466342 CLDN3O15551 220 aa12.91□□□□□ -0.34
SQSTM1-206ENST00000466342 PRPF6O94906 941 aaKnown RBP12.91□□□□□ -0.34
SQSTM1-206ENST00000466342 RHOBTB3O94955 611 aa12.91□□□□□ -0.34
SQSTM1-206ENST00000466342 SPINK2P20155 84 aa12.91□□□□□ -0.34
SQSTM1-206ENST00000466342 GRM5P41594 1212 aa12.91□□□□□ -0.34
SQSTM1-206ENST00000466342 YARSP54577 528 aaKnown RBP12.91□□□□□ -0.34
SQSTM1-206ENST00000466342 MCL1Q07820 350 aa12.91□□□□□ -0.34
SQSTM1-206ENST00000466342 KCNA1Q09470 495 aa12.91□□□□□ -0.34
SQSTM1-206ENST00000466342 ELAVL2Q12926 359 aaKnown RBP12.91□□□□□ -0.34
SQSTM1-206ENST00000466342 PSMD2Q13200 908 aa12.91□□□□□ -0.34
SQSTM1-206ENST00000466342 KCNB1Q14721 858 aa12.91□□□□□ -0.34
SQSTM1-206ENST00000466342 HEATR6Q6AI08 1181 aaKnown RBP12.91□□□□□ -0.34
SQSTM1-206ENST00000466342 SLC39A4Q6P5W5 647 aa12.91□□□□□ -0.34
SQSTM1-206ENST00000466342 ZNF507Q8TCN5 953 aa12.91□□□□□ -0.34
SQSTM1-206ENST00000466342 ING5Q8WYH8 240 aa12.91□□□□□ -0.34
SQSTM1-206ENST00000466342 RABGGTAQ92696 567 aa12.91□□□□□ -0.34
SQSTM1-206ENST00000466342 IRF7Q92985 503 aa12.91□□□□□ -0.34
SQSTM1-206ENST00000466342 ZBTB45Q96K62 511 aaPredicted RBP12.91□□□□□ -0.34
SQSTM1-206ENST00000466342 PAAF1Q9BRP4 392 aa12.91□□□□□ -0.34
SQSTM1-206ENST00000466342 TCHPQ9BT92 498 aa12.91□□□□□ -0.34
SQSTM1-206ENST00000466342 TRMT61BQ9BVS5 477 aaKnown RBP12.91□□□□□ -0.34
SQSTM1-206ENST00000466342 CCDC94Q9BW85 323 aaPredicted RBP12.91□□□□□ -0.34
SQSTM1-206ENST00000466342 TMEM206Q9H813 350 aa12.91□□□□□ -0.34
SQSTM1-206ENST00000466342 SLC39A2Q9NP94 309 aa12.91□□□□□ -0.34
SQSTM1-206ENST00000466342 TRPV5Q9NQA5 729 aa12.91□□□□□ -0.34
SQSTM1-206ENST00000466342 TOPORSQ9NS56 1045 aaPredicted RBP12.91□□□□□ -0.34
SQSTM1-206ENST00000466342 MRPS23Q9Y3D9 190 aaKnown RBP12.91□□□□□ -0.34
SQSTM1-206ENST00000466342 VWA8A3KMH1 1905 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms