RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 ACAD9Q9H845 621 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 SAE1Q9UBE0 346 aaPredicted RBP3.44□□□□□ -1.86
CSMD3-202ENST00000339701 TTLL3Q9Y4R7 772 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 IDH3BO43837 385 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 OPHN1O60890 802 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 HNF1BP35680 557 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 ARL4AP40617 200 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 GTF2H3Q13889 308 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 TKFCQ3LXA3 575 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 EIF5AL1Q6IS14 154 aaKnown RBP3.44□□□□□ -1.86
CSMD3-202ENST00000339701 AGGF1Q8N302 714 aaeCLIP3.44□□□□□ -1.86
CSMD3-202ENST00000339701 PIK3C3Q8NEB9 887 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 BAP1Q92560 729 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 FTHL17Q9BXU8 183 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 ING2Q9H160 280 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 ZSWIM6Q9HCJ5 1215 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 PCDHGB4Q9UN71 923 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 SOX13Q9UN79 622 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 IGSF9BQ9UPX0 1349 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 ZNF711Q9Y462 761 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 MAFGO15525 162 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 KLHL2O95198 593 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 IFNA14P01570 189 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 CPA1P15085 419 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 VAV1P15498 845 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 ITGAXP20702 1163 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 CCND1P24385 295 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 ETFBP38117 255 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 SERPINB8P50452 374 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 CAPZA1P52907 286 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 SESN2P58004 480 aaPredicted RBP3.44□□□□□ -1.86
CSMD3-202ENST00000339701 DAB2P98082 770 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 HDLBPQ00341 1268 aaKnown RBP3.44□□□□□ -1.86
CSMD3-202ENST00000339701 PTK2BQ14289 1009 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 INPP5AQ14642 412 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 RCN1Q15293 331 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 JADE1Q6IE81 842 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 HHIPL2Q6UWX4 724 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 TRIM50Q86XT4 487 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 PBXIP1Q96AQ6 731 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 ERLEC1Q96DZ1 483 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 KLC2Q9H0B6 622 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 IARS2Q9NSE4 1012 aaKnown RBP3.44□□□□□ -1.86
CSMD3-202ENST00000339701 ZBTB1Q9Y2K1 713 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 ZNF521Q96K83 1311 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 P4HA2O15460 535 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 PPP6R2O75170 966 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 PDE8BO95263 885 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 FAM200BP0CF97 657 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 TALDO1P37837 337 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 SLC1A1P43005 524 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 MCAMP43121 646 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 STK4Q13043 487 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 ZNF827Q17R98 1081 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 TRMT11Q7Z4G4 463 aaKnown RBP3.44□□□□□ -1.86
CSMD3-202ENST00000339701 UBLCP1Q8WVY7 318 aaPredicted RBP3.44□□□□□ -1.86
CSMD3-202ENST00000339701 CLIC6Q96NY7 704 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 ROPN1BQ9BZX4 212 aaPredicted RBP3.44□□□□□ -1.86
CSMD3-202ENST00000339701 ROPN1Q9HAT0 212 aaPredicted RBP3.44□□□□□ -1.86
CSMD3-202ENST00000339701 SENP2Q9HC62 589 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 GEMIN8Q9NWZ8 242 aaKnown RBP3.44□□□□□ -1.86
CSMD3-202ENST00000339701 RAB20Q9NX57 234 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 TMCO1Q9UM00 188 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 ATP8A1Q9Y2Q0 1164 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 DDX52Q9Y2R4 599 aaKnown RBP eCLIP3.44□□□□□ -1.86
CSMD3-202ENST00000339701 RP1P56715 2156 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 GAKO14976 1311 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 TTLL13PA6NNM8 815 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 HNRNPCL2B2RXH8 293 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 DDAH1O94760 285 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 KRT9P35527 623 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 THPOP40225 353 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 SERPINB9P50453 376 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 EPHB1P54762 984 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 GJC2Q5T442 439 aaPredicted RBP3.44□□□□□ -1.86
CSMD3-202ENST00000339701 C12orf60Q5U649 245 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 CSGALNACT2Q8N6G5 542 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 ICA1LQ8NDH6 482 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 HAPLN3Q96S86 360 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 KIAA1468Q9P260 1216 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 PLA2G4CQ9UP65 541 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 CDY2AQ9Y6F7 541 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 CDY1Q9Y6F8 540 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 CITO14578 2027 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 EYA2O00167 538 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 STX7O15400 261 aaKnown RBP3.44□□□□□ -1.86
CSMD3-202ENST00000339701 PFKFB2O60825 505 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 ATP1A1P05023 1023 aaKnown RBP3.44□□□□□ -1.86
CSMD3-202ENST00000339701 ALDH2P05091 517 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 PDIA3P30101 505 aaKnown RBP3.44□□□□□ -1.86
CSMD3-202ENST00000339701 STAT3P40763 770 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 MAGEA1P43355 309 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 MRPL28Q13084 256 aaKnown RBP3.44□□□□□ -1.86
CSMD3-202ENST00000339701 MMRN1Q13201 1228 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 CLEC16AQ2KHT3 1053 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 CWF19L2Q2TBE0 894 aaKnown RBP3.44□□□□□ -1.86
CSMD3-202ENST00000339701 PPM1LQ5SGD2 360 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 NOL9Q5SY16 702 aaKnown RBP3.44□□□□□ -1.86
CSMD3-202ENST00000339701 SNRNP48Q6IEG0 339 aaKnown RBP3.44□□□□□ -1.86
CSMD3-202ENST00000339701 LRRC31Q6UY01 552 aa3.44□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms