RNA–Protein interactions for RNA: YOL142W

RRP40, Transcript of Exosome non-catalytic core component, yeast

Gene RRP40, Length 723 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RRP40	YOL142W	FSH3	Q99369	266 aa		3.61	□□□□□ -1.83
RRP40	YOL142W	SPT14	P32363	452 aa		3.6	□□□□□ -1.83
RRP40	YOL142W	GPI14	P47088	403 aa	Known RBP	3.6	□□□□□ -1.83
RRP40	YOL142W	BXI1	P48558	297 aa		3.6	□□□□□ -1.83
RRP40	YOL142W	VHT1	P53241	593 aa		3.6	□□□□□ -1.83
RRP40	YOL142W	CTF19	Q02732	369 aa		3.6	□□□□□ -1.83
RRP40	YOL142W	MSC3	Q05812	728 aa		3.6	□□□□□ -1.83
RRP40	YOL142W	PIN3	Q06449	215 aa		3.6	□□□□□ -1.83
RRP40	YOL142W	MCH1	Q07376	486 aa		3.6	□□□□□ -1.83
RRP40	YOL142W	YOR283W	Q12040	230 aa	Known RBP	3.6	□□□□□ -1.83
RRP40	YOL142W	MPD1	Q12404	318 aa	Known RBP	3.6	□□□□□ -1.83
RRP40	YOL142W	RPL39	P04650	51 aa		3.59	□□□□□ -1.83
RRP40	YOL142W	ZUO1	P32527	433 aa	Known RBP	3.59	□□□□□ -1.83
RRP40	YOL142W	UMP1	P38293	148 aa		3.59	□□□□□ -1.83
RRP40	YOL142W	IPI1	P38803	334 aa	Predicted RBP	3.59	□□□□□ -1.83
RRP40	YOL142W	RMD6	P39975	231 aa		3.59	□□□□□ -1.83
RRP40	YOL142W	RTT105	P40063	208 aa		3.59	□□□□□ -1.83
RRP40	YOL142W	SYS1	P41544	203 aa		3.59	□□□□□ -1.83
RRP40	YOL142W	SER2	P42941	309 aa		3.59	□□□□□ -1.83
RRP40	YOL142W	OTU1	P43558	301 aa		3.59	□□□□□ -1.83
RRP40	YOL142W	GON7	P46984	123 aa		3.59	□□□□□ -1.83
RRP40	YOL142W	IRC18	P47056	224 aa		3.59	□□□□□ -1.83
RRP40	YOL142W	TPN1	P53099	579 aa		3.59	□□□□□ -1.83
RRP40	YOL142W	YDR248C	Q03786	193 aa		3.59	□□□□□ -1.83
RRP40	YOL142W	GMC1	Q04399	608 aa		3.59	□□□□□ -1.83
RRP40	YOL142W	YDR114C	Q04597	100 aa		3.59	□□□□□ -1.83
RRP40	YOL142W	YLR283W	Q05867	314 aa		3.59	□□□□□ -1.83
RRP40	YOL142W	ERP4	Q12450	207 aa		3.59	□□□□□ -1.83
RRP40	YOL142W	YCL042W	P25572	119 aa		3.58	□□□□□ -1.84
RRP40	YOL142W	IMP1	P28627	190 aa		3.58	□□□□□ -1.84
RRP40	YOL142W	VMA5	P31412	392 aa	Known RBP	3.58	□□□□□ -1.84
RRP40	YOL142W	YHR122W	P38829	231 aa		3.58	□□□□□ -1.84
RRP40	YOL142W	YER121W	P40076	114 aa		3.58	□□□□□ -1.84
RRP40	YOL142W	SBH2	P52871	88 aa		3.58	□□□□□ -1.84
RRP40	YOL142W	UFD1	P53044	361 aa		3.58	□□□□□ -1.84
RRP40	YOL142W	YGR042W	P53227	271 aa		3.58	□□□□□ -1.84
RRP40	YOL142W	HNT1	Q04344	158 aa	Known RBP	3.58	□□□□□ -1.84
RRP40	YOL142W	YOR186W	Q08560	144 aa		3.58	□□□□□ -1.84
RRP40	YOL142W	YOR029W	Q12243	111 aa		3.58	□□□□□ -1.84
RRP40	YOL142W	REP2	P03872	296 aa		3.57	□□□□□ -1.84
RRP40	YOL142W	URA6	P15700	204 aa		3.57	□□□□□ -1.84
RRP40	YOL142W	RFA3	P26755	122 aa	Known RBP	3.57	□□□□□ -1.84
RRP40	YOL142W	FMT1	P32785	401 aa		3.57	□□□□□ -1.84
RRP40	YOL142W	VAM7	P32912	316 aa		3.57	□□□□□ -1.84
RRP40	YOL142W	YKL063C	P35725	167 aa		3.57	□□□□□ -1.84
RRP40	YOL142W	CTR2	P38865	189 aa		3.57	□□□□□ -1.84
RRP40	YOL142W	HPA3	P39979	161 aa		3.57	□□□□□ -1.84
RRP40	YOL142W	YIR020C	P40575	100 aa		3.57	□□□□□ -1.84
RRP40	YOL142W	CAT5	P41735	233 aa		3.57	□□□□□ -1.84
RRP40	YOL142W	MRX5	P47007	382 aa		3.57	□□□□□ -1.84
RRP40	YOL142W	ARO8	P53090	500 aa	Known RBP	3.57	□□□□□ -1.84
RRP40	YOL142W	RTR2	Q12378	196 aa		3.57	□□□□□ -1.84
RRP40	YOL142W	YCL048W-A	Q2V2Q2	79 aa		3.57	□□□□□ -1.84
RRP40	YOL142W	SPO24	Q3E752	67 aa		3.57	□□□□□ -1.84
RRP40	YOL142W	ODC2	Q99297	307 aa		3.57	□□□□□ -1.84
RRP40	YOL142W	PET54	P10834	293 aa		3.56	□□□□□ -1.84
RRP40	YOL142W	IFM1	P25038	676 aa		3.56	□□□□□ -1.84
RRP40	YOL142W	OCH1	P31755	480 aa		3.56	□□□□□ -1.84
RRP40	YOL142W	YBL010C	P32788	280 aa		3.56	□□□□□ -1.84
RRP40	YOL142W	PRS2	P38620	318 aa	Known RBP	3.56	□□□□□ -1.84
RRP40	YOL142W	CCS1	P40202	249 aa	Known RBP	3.56	□□□□□ -1.84
RRP40	YOL142W	AIM20	P40451	204 aa		3.56	□□□□□ -1.84
RRP40	YOL142W	SLM1	P40485	686 aa		3.56	□□□□□ -1.84
RRP40	YOL142W	DIE2	P50076	525 aa		3.56	□□□□□ -1.84
RRP40	YOL142W	GEP7	P53171	287 aa		3.56	□□□□□ -1.84
RRP40	YOL142W	LSM7	P53905	115 aa	Known RBP	3.56	□□□□□ -1.84
RRP40	YOL142W	RPL21A	Q02753	160 aa	Known RBP	3.56	□□□□□ -1.84
RRP40	YOL142W	YPL067C	Q02754	198 aa		3.56	□□□□□ -1.84
RRP40	YOL142W	UTP15	Q04305	513 aa	Known RBP	3.56	□□□□□ -1.84
RRP40	YOL142W	UPS1	Q05776	175 aa		3.56	□□□□□ -1.84
RRP40	YOL142W	FRE8	Q12209	686 aa		3.56	□□□□□ -1.84
RRP40	YOL142W	RPL21B	Q12672	160 aa	Known RBP	3.56	□□□□□ -1.84
RRP40	YOL142W	YMR105W-A	Q8TGS8	64 aa		3.56	□□□□□ -1.84
RRP40	YOL142W	TDH2	P00358	332 aa	Known RBP	3.55	□□□□□ -1.84
RRP40	YOL142W	RPL25	P04456	142 aa	Known RBP	3.55	□□□□□ -1.84
RRP40	YOL142W	YLL053C	P0CD98	152 aa		3.55	□□□□□ -1.84
RRP40	YOL142W	APA2	P22108	325 aa		3.55	□□□□□ -1.84
RRP40	YOL142W	YCR101C	P25607	182 aa		3.55	□□□□□ -1.84
RRP40	YOL142W	RPL16A	P26784	199 aa	Known RBP	3.55	□□□□□ -1.84
RRP40	YOL142W	HYM1	P32464	399 aa		3.55	□□□□□ -1.84
RRP40	YOL142W	RIB7	P33312	244 aa		3.55	□□□□□ -1.84
RRP40	YOL142W	FIG1	P38224	298 aa		3.55	□□□□□ -1.84
RRP40	YOL142W	LSM4	P40070	187 aa	Known RBP	3.55	□□□□□ -1.84
RRP40	YOL142W	YKE4	P40544	346 aa		3.55	□□□□□ -1.84
RRP40	YOL142W	GNA1	P43577	159 aa	Predicted RBP	3.55	□□□□□ -1.84
RRP40	YOL142W	XPT1	P47165	209 aa		3.55	□□□□□ -1.84
RRP40	YOL142W	YNR064C	P53750	290 aa		3.55	□□□□□ -1.84
RRP40	YOL142W	PEX10	Q05568	337 aa		3.55	□□□□□ -1.84
RRP40	YOL142W	YOR385W	Q08909	290 aa		3.55	□□□□□ -1.84
RRP40	YOL142W	GEP5	Q12393	293 aa		3.55	□□□□□ -1.84
RRP40	YOL142W	DYN1	P36022	4092 aa		3.54	□□□□□ -1.84
RRP40	YOL142W	SWD2	P36104	329 aa	Predicted RBP	3.54	□□□□□ -1.84
RRP40	YOL142W	PEX22	P39718	180 aa		3.54	□□□□□ -1.84
RRP40	YOL142W	PIR5	P46999	287 aa		3.54	□□□□□ -1.84
RRP40	YOL142W	YDR115W	Q04598	105 aa		3.54	□□□□□ -1.84
RRP40	YOL142W	SYM1	Q06563	197 aa		3.54	□□□□□ -1.84
RRP40	YOL142W	YLR031W	Q07978	186 aa		3.54	□□□□□ -1.84
RRP40	YOL142W	YOL118C	Q08259	102 aa		3.54	□□□□□ -1.84
RRP40	YOL142W	YOR097C	Q12274	175 aa	Predicted RBP	3.54	□□□□□ -1.84
RRP40	YOL142W	YOR192C-C	Q3E736	78 aa		3.54	□□□□□ -1.84

Retrieved 100 of 5,963 RNA–protein pairs in 86.9 ms