RNA–Protein interactions for RNA: YDL060W

TSR1, Transcript of Protein required for processing of 20S pre-rRNA in the cytoplasm, yeast

Gene TSR1, Length 2,367 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TSR1	YDL060W	RRT7	Q07829	113 aa		3.14	□□□□□ -1.91
TSR1	YDL060W	YLR046C	Q12253	270 aa		3.14	□□□□□ -1.91
TSR1	YDL060W	TFC7	Q12415	435 aa		3.14	□□□□□ -1.91
TSR1	YDL060W	PSF1	Q12488	208 aa		3.14	□□□□□ -1.91
TSR1	YDL060W	CSR2	Q12734	1121 aa		3.14	□□□□□ -1.91
TSR1	YDL060W	RPB5	P20434	215 aa		3.13	□□□□□ -1.91
TSR1	YDL060W	INO2	P26798	304 aa		3.13	□□□□□ -1.91
TSR1	YDL060W	SEC17	P32602	292 aa		3.13	□□□□□ -1.91
TSR1	YDL060W	SHE1	P38200	338 aa		3.13	□□□□□ -1.91
TSR1	YDL060W	COX14	P39103	70 aa		3.13	□□□□□ -1.91
TSR1	YDL060W	POG1	P40473	351 aa		3.13	□□□□□ -1.91
TSR1	YDL060W	LCB3	P47013	409 aa		3.13	□□□□□ -1.91
TSR1	YDL060W	YPS5	P53057	165 aa		3.13	□□□□□ -1.91
TSR1	YDL060W	KEI1	Q06346	221 aa		3.13	□□□□□ -1.91
TSR1	YDL060W	RPL28	P02406	149 aa	Known RBP	3.12	□□□□□ -1.91
TSR1	YDL060W	RPL23A	P0CX41	137 aa	Known RBP	3.12	□□□□□ -1.91
TSR1	YDL060W	RPL23B	P0CX42	137 aa	Known RBP	3.12	□□□□□ -1.91
TSR1	YDL060W	EHD3	P28817	500 aa		3.12	□□□□□ -1.91
TSR1	YDL060W	MRPL11	P36521	249 aa	Predicted RBP	3.12	□□□□□ -1.91
TSR1	YDL060W	YER121W	P40076	114 aa		3.12	□□□□□ -1.91
TSR1	YDL060W	BMT5	P40493	336 aa		3.12	□□□□□ -1.91
TSR1	YDL060W	MIC26	P50087	233 aa		3.12	□□□□□ -1.91
TSR1	YDL060W	YGR042W	P53227	271 aa		3.12	□□□□□ -1.91
TSR1	YDL060W	MET31	Q03081	177 aa		3.12	□□□□□ -1.91
TSR1	YDL060W	AVO2	Q04749	426 aa		3.12	□□□□□ -1.91
TSR1	YDL060W	MRX9	Q07349	420 aa	Known RBP	3.12	□□□□□ -1.91
TSR1	YDL060W	MFG1	Q07684	458 aa		3.12	□□□□□ -1.91
TSR1	YDL060W	PCL9	Q12477	304 aa		3.12	□□□□□ -1.91
TSR1	YDL060W	PIS1	P06197	220 aa	Known RBP	3.12	□□□□□ -1.91
TSR1	YDL060W	RPS14A	P06367	137 aa	Known RBP	3.12	□□□□□ -1.91
TSR1	YDL060W	ADK1	P07170	222 aa	Known RBP	3.12	□□□□□ -1.91
TSR1	YDL060W	PHO2	P07269	559 aa		3.12	□□□□□ -1.91
TSR1	YDL060W	PUT1	P09368	476 aa		3.12	□□□□□ -1.91
TSR1	YDL060W	CTA1	P15202	515 aa		3.12	□□□□□ -1.91
TSR1	YDL060W	PRE1	P22141	198 aa	Known RBP	3.12	□□□□□ -1.91
TSR1	YDL060W	TIP20	P33891	701 aa		3.12	□□□□□ -1.91
TSR1	YDL060W	MIX23	P38162	196 aa		3.12	□□□□□ -1.91
TSR1	YDL060W	PET8	P38921	284 aa		3.12	□□□□□ -1.91
TSR1	YDL060W	RPS14B	P39516	138 aa	Known RBP	3.12	□□□□□ -1.91
TSR1	YDL060W	SYS1	P41544	203 aa		3.12	□□□□□ -1.91
TSR1	YDL060W	YGL260W	P53056	76 aa		3.12	□□□□□ -1.91
TSR1	YDL060W	FLC3	P53121	802 aa		3.12	□□□□□ -1.91
TSR1	YDL060W	COG7	P53195	279 aa		3.12	□□□□□ -1.91
TSR1	YDL060W	SUR7	P54003	302 aa		3.12	□□□□□ -1.91
TSR1	YDL060W	YDR366C	P87287	132 aa		3.12	□□□□□ -1.91
TSR1	YDL060W	TRM44	Q02648	567 aa	Known RBP	3.12	□□□□□ -1.91
TSR1	YDL060W	YMR166C	Q03829	368 aa		3.12	□□□□□ -1.91
TSR1	YDL060W	YMR254C	Q04838	102 aa		3.12	□□□□□ -1.91
TSR1	YDL060W	DPP1	Q05521	289 aa		3.12	□□□□□ -1.91
TSR1	YDL060W	PEX30	Q06169	523 aa		3.12	□□□□□ -1.91
TSR1	YDL060W	TPI1	P00942	248 aa	Known RBP	3.11	□□□□□ -1.91
TSR1	YDL060W	TCA17	P32613	152 aa		3.11	□□□□□ -1.91
TSR1	YDL060W	AME1	P38313	324 aa		3.11	□□□□□ -1.91
TSR1	YDL060W	CHL4	P38907	458 aa		3.11	□□□□□ -1.91
TSR1	YDL060W	ASP1	P38986	381 aa	Predicted RBP	3.11	□□□□□ -1.91
TSR1	YDL060W	PFS2	P42841	465 aa	Known RBP	3.11	□□□□□ -1.91
TSR1	YDL060W	TPS1	Q00764	495 aa	Known RBP	3.11	□□□□□ -1.91
TSR1	YDL060W	YMR315W	Q04869	349 aa	Known RBP	3.11	□□□□□ -1.91
TSR1	YDL060W	FYV7	Q12247	151 aa		3.11	□□□□□ -1.91
TSR1	YDL060W	HEM4	P06174	275 aa		3.11	□□□□□ -1.91
TSR1	YDL060W	YPR170W-B	P0C5R9	85 aa		3.11	□□□□□ -1.91
TSR1	YDL060W	KTI12	P34253	313 aa	Known RBP	3.11	□□□□□ -1.91
TSR1	YDL060W	DRE2	P36152	348 aa		3.11	□□□□□ -1.91
TSR1	YDL060W	EMC5	P40540	141 aa		3.11	□□□□□ -1.91
TSR1	YDL060W	GAB1	P41733	394 aa		3.11	□□□□□ -1.91
TSR1	YDL060W	MOB2	P43563	287 aa		3.11	□□□□□ -1.91
TSR1	YDL060W	COS10	P52924	374 aa		3.11	□□□□□ -1.91
TSR1	YDL060W	RHO3	Q00245	231 aa	Known RBP	3.11	□□□□□ -1.91
TSR1	YDL060W	ADD37	Q03233	198 aa		3.11	□□□□□ -1.91
TSR1	YDL060W	YDR391C	Q04170	232 aa		3.11	□□□□□ -1.91
TSR1	YDL060W	YLR446W	Q06204	433 aa		3.11	□□□□□ -1.91
TSR1	YDL060W	COQ10	Q08058	207 aa		3.11	□□□□□ -1.91
TSR1	YDL060W	FDH1	Q08911	376 aa		3.11	□□□□□ -1.91
TSR1	YDL060W	FCY22	Q12119	530 aa		3.11	□□□□□ -1.91
TSR1	YDL060W	CDC7	P06243	507 aa		3.1	□□□□□ -1.91
TSR1	YDL060W	YFL068W	P0CX99	160 aa		3.1	□□□□□ -1.91
TSR1	YDL060W	YLL066W-A	P0CY00	160 aa		3.1	□□□□□ -1.91
TSR1	YDL060W	YLL067W-A	P0CY01	160 aa		3.1	□□□□□ -1.91
TSR1	YDL060W	AGA2	P32781	87 aa		3.1	□□□□□ -1.91
TSR1	YDL060W	PRY2	P36110	329 aa		3.1	□□□□□ -1.91
TSR1	YDL060W	PEX22	P39718	180 aa		3.1	□□□□□ -1.91
TSR1	YDL060W	GIM4	P40005	111 aa	Known RBP	3.1	□□□□□ -1.91
TSR1	YDL060W	GLC8	P41818	229 aa		3.1	□□□□□ -1.91
TSR1	YDL060W	TRM9	P49957	279 aa		3.1	□□□□□ -1.91
TSR1	YDL060W	BOL2	P53082	120 aa		3.1	□□□□□ -1.91
TSR1	YDL060W	SWS2	P53937	143 aa		3.1	□□□□□ -1.91
TSR1	YDL060W	ATG39	Q06159	398 aa		3.1	□□□□□ -1.91
TSR1	YDL060W	RRS1	Q08746	203 aa	Known RBP	3.1	□□□□□ -1.91
TSR1	YDL060W	MMT2	Q08970	484 aa		3.1	□□□□□ -1.91
TSR1	YDL060W	YPL229W	Q99395	206 aa		3.1	□□□□□ -1.91
TSR1	YDL060W	IRA1	P18963	3092 aa		3.1	□□□□□ -1.91
TSR1	YDL060W	SPT3	P06844	337 aa		3.1	□□□□□ -1.91
TSR1	YDL060W	CPA1	P07258	411 aa	Known RBP	3.1	□□□□□ -1.91
TSR1	YDL060W	BGL2	P15703	313 aa	Known RBP	3.1	□□□□□ -1.91
TSR1	YDL060W	ATS1	P31386	333 aa		3.1	□□□□□ -1.91
TSR1	YDL060W	AYR1	P40471	297 aa		3.1	□□□□□ -1.91
TSR1	YDL060W	CIN5	P40917	295 aa		3.1	□□□□□ -1.91
TSR1	YDL060W	SAY1	P53324	424 aa		3.1	□□□□□ -1.91
TSR1	YDL060W	VPS28	Q02767	242 aa		3.1	□□□□□ -1.91
TSR1	YDL060W	ELP6	Q04868	273 aa		3.1	□□□□□ -1.91

Retrieved 100 of 5,963 RNA–protein pairs in 51.9 ms