RNA–Protein interactions for RNA: ENST00000568539.1

SF3B3-212, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-212ENST00000568539 COLEC11Q9BWP8 271 aa9.08□□□□□ -0.96
SF3B3-212ENST00000568539 IMPG2Q9BZV3 1241 aa9.08□□□□□ -0.96
SF3B3-212ENST00000568539 PLCB1Q9NQ66 1216 aa9.08□□□□□ -0.96
SF3B3-212ENST00000568539 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.08□□□□□ -0.961e-10■■■■■ 67.3
SF3B3-212ENST00000568539 GDAP2Q9NXN4 497 aa9.08□□□□□ -0.96
SF3B3-212ENST00000568539 FAN1Q9Y2M0 1017 aa9.08□□□□□ -0.96
SF3B3-212ENST00000568539 YBX2Q9Y2T7 364 aaKnown RBP9.08□□□□□ -0.96
SF3B3-212ENST00000568539 PRG3Q9Y2Y8 225 aaPredicted RBP9.08□□□□□ -0.96
SF3B3-212ENST00000568539 NUB1Q9Y5A7 615 aa9.08□□□□□ -0.96
SF3B3-212ENST00000568539 TET1Q8NFU7 2136 aa9.07□□□□□ -0.96
SF3B3-212ENST00000568539 RALGAPA2Q2PPJ7 1873 aa9.07□□□□□ -0.96
SF3B3-212ENST00000568539 CARNS1A5YM72 827 aa9.07□□□□□ -0.96
SF3B3-212ENST00000568539 NT5C1B-RDH14C9J2C7 533 aa9.07□□□□□ -0.96
SF3B3-212ENST00000568539 EPHB6O15197 1021 aa9.07□□□□□ -0.96
SF3B3-212ENST00000568539 NOL4O94818 638 aa9.07□□□□□ -0.96
SF3B3-212ENST00000568539 CA3P07451 260 aa9.07□□□□□ -0.96
SF3B3-212ENST00000568539 ASPAP45381 313 aa9.07□□□□□ -0.96
SF3B3-212ENST00000568539 BRCC3P46736 316 aa9.07□□□□□ -0.96
SF3B3-212ENST00000568539 LRMPQ12912 555 aa9.07□□□□□ -0.96
SF3B3-212ENST00000568539 RAB30Q15771 203 aa9.07□□□□□ -0.96
SF3B3-212ENST00000568539 TIGD5Q53EQ6 642 aa9.07□□□□□ -0.96
SF3B3-212ENST00000568539 ZNF667Q5HYK9 610 aa9.07□□□□□ -0.96
SF3B3-212ENST00000568539 SPOUT1Q5T280 376 aaKnown RBP9.07□□□□□ -0.96
SF3B3-212ENST00000568539 KLHDC7AQ5VTJ3 777 aa9.07□□□□□ -0.96
SF3B3-212ENST00000568539 GPR153Q6NV75 609 aa9.07□□□□□ -0.96
SF3B3-212ENST00000568539 LIMS2Q7Z4I7 341 aa9.07□□□□□ -0.96
SF3B3-212ENST00000568539 VSTM4Q8IW00 320 aa9.07□□□□□ -0.96
SF3B3-212ENST00000568539 ARHGEF19Q8IW93 802 aa9.07□□□□□ -0.96
SF3B3-212ENST00000568539 TTC13Q8NBP0 860 aa9.07□□□□□ -0.96
SF3B3-212ENST00000568539 CCDC150Q8NCX0 1101 aa9.07□□□□□ -0.96
SF3B3-212ENST00000568539 TATDN2Q93075 761 aa9.07□□□□□ -0.96
SF3B3-212ENST00000568539 IGSF21Q96ID5 467 aa9.07□□□□□ -0.96
SF3B3-212ENST00000568539 FAXDC2Q96IV6 333 aa9.07□□□□□ -0.96
SF3B3-212ENST00000568539 SUSD3Q96L08 255 aa9.07□□□□□ -0.96
SF3B3-212ENST00000568539 NT5C1BQ96P26 610 aa9.07□□□□□ -0.96
SF3B3-212ENST00000568539 REPIN1Q9BWE0 567 aaKnown RBP9.07□□□□□ -0.96
SF3B3-212ENST00000568539 LSM14BQ9BX40 385 aaKnown RBP9.07□□□□□ -0.96
SF3B3-212ENST00000568539 PBX4Q9BYU1 374 aa9.07□□□□□ -0.96
SF3B3-212ENST00000568539 BCO2Q9BYV7 579 aa9.07□□□□□ -0.96
SF3B3-212ENST00000568539 NIF3L1Q9GZT8 377 aa9.07□□□□□ -0.96
SF3B3-212ENST00000568539 GANQ9H2C0 597 aa9.07□□□□□ -0.96
SF3B3-212ENST00000568539 AAASQ9NRG9 546 aa9.07□□□□□ -0.96
SF3B3-212ENST00000568539 FAM207AQ9NSI2 230 aaPredicted RBP9.07□□□□□ -0.96
SF3B3-212ENST00000568539 SPG21Q9NZD8 308 aa9.07□□□□□ -0.96
SF3B3-212ENST00000568539 NXF1Q9UBU9 619 aaKnown RBP9.07□□□□□ -0.96
SF3B3-212ENST00000568539 APEX2Q9UBZ4 518 aa9.07□□□□□ -0.96
SF3B3-212ENST00000568539 AJAP1Q9UKB5 411 aaPredicted RBP9.07□□□□□ -0.96
SF3B3-212ENST00000568539 ADAM28Q9UKQ2 775 aa9.07□□□□□ -0.96
SF3B3-212ENST00000568539 POLIQ9UNA4 740 aa9.07□□□□□ -0.96
SF3B3-212ENST00000568539 SNX9Q9Y5X1 595 aa9.07□□□□□ -0.96
SF3B3-212ENST00000568539 MICAL3Q7RTP6 2002 aa9.07□□□□□ -0.96
SF3B3-212ENST00000568539 ITIH6Q6UXX5 1313 aa9.06□□□□□ -0.96
SF3B3-212ENST00000568539 A0A1W2PPC1 479 aa9.06□□□□□ -0.96
SF3B3-212ENST00000568539 I3L4J1 428 aa9.06□□□□□ -0.96
SF3B3-212ENST00000568539 M0QZQ0 153 aa9.06□□□□□ -0.96
SF3B3-212ENST00000568539 TADA2AO75478 443 aa9.06□□□□□ -0.96
SF3B3-212ENST00000568539 ADCY5O95622 1261 aa9.06□□□□□ -0.96
SF3B3-212ENST00000568539 UCHL3P15374 230 aa9.06□□□□□ -0.96
SF3B3-212ENST00000568539 PPM1AP35813 382 aa9.06□□□□□ -0.96
SF3B3-212ENST00000568539 BMPR1AP36894 532 aa9.06□□□□□ -0.96
SF3B3-212ENST00000568539 TNNC1P63316 161 aa9.06□□□□□ -0.96
SF3B3-212ENST00000568539 SMAD3P84022 425 aaKnown RBP9.06□□□□□ -0.96
SF3B3-212ENST00000568539 GCNT1Q02742 428 aa9.06□□□□□ -0.96
SF3B3-212ENST00000568539 TAP1Q03518 808 aa9.06□□□□□ -0.96
SF3B3-212ENST00000568539 CUL2Q13617 745 aa9.06□□□□□ -0.96
SF3B3-212ENST00000568539 SOWAHAQ2M3V2 549 aa9.06□□□□□ -0.96
SF3B3-212ENST00000568539 FIGNQ5HY92 759 aa9.06□□□□□ -0.96
SF3B3-212ENST00000568539 SPECC1LQ69YQ0 1117 aa9.06□□□□□ -0.96
SF3B3-212ENST00000568539 IQCEQ6IPM2 695 aa9.06□□□□□ -0.96
SF3B3-212ENST00000568539 FUT10Q6P4F1 479 aa9.06□□□□□ -0.96
SF3B3-212ENST00000568539 GJB7Q6PEY0 223 aa9.06□□□□□ -0.96
SF3B3-212ENST00000568539 DSTYKQ6XUX3 929 aa9.06□□□□□ -0.96
SF3B3-212ENST00000568539 RRAGAQ7L523 313 aa9.06□□□□□ -0.96
SF3B3-212ENST00000568539 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.06□□□□□ -0.96
SF3B3-212ENST00000568539 RNF168Q8IYW5 571 aaPredicted RBP9.06□□□□□ -0.96
SF3B3-212ENST00000568539 PPM1KQ8N3J5 372 aa9.06□□□□□ -0.96
SF3B3-212ENST00000568539 DEFB123Q8N688 67 aa9.06□□□□□ -0.96
SF3B3-212ENST00000568539 NEK11Q8NG66 645 aa9.06□□□□□ -0.96
SF3B3-212ENST00000568539 KAT5Q92993 513 aa9.06□□□□□ -0.96
SF3B3-212ENST00000568539 SENP8Q96LD8 212 aa9.06□□□□□ -0.96
SF3B3-212ENST00000568539 PCMTD1Q96MG8 357 aaPredicted RBP9.06□□□□□ -0.96
SF3B3-212ENST00000568539 ARID3AQ99856 593 aa9.06□□□□□ -0.96
SF3B3-212ENST00000568539 C17orf80Q9BSJ5 609 aa9.06□□□□□ -0.96
SF3B3-212ENST00000568539 VN1R3Q9BXE9 311 aa9.06□□□□□ -0.96
SF3B3-212ENST00000568539 NAA15Q9BXJ9 866 aaKnown RBP9.06□□□□□ -0.96
SF3B3-212ENST00000568539 GPR62Q9BZJ7 368 aa9.06□□□□□ -0.96
SF3B3-212ENST00000568539 TTYH3Q9C0H2 523 aa9.06□□□□□ -0.96
SF3B3-212ENST00000568539 SDCBP2Q9H190 292 aa9.06□□□□□ -0.96
SF3B3-212ENST00000568539 UBE2TQ9NPD8 197 aaPredicted RBP9.06□□□□□ -0.96
SF3B3-212ENST00000568539 FBXL5Q9UKA1 691 aa9.06□□□□□ -0.96
SF3B3-212ENST00000568539 DNAJC12Q9UKB3 198 aa9.06□□□□□ -0.96
SF3B3-212ENST00000568539 L1RE1Q9UN81 338 aa9.06□□□□□ -0.96
SF3B3-212ENST00000568539 RWDD3Q9Y3V2 267 aa9.06□□□□□ -0.96
SF3B3-212ENST00000568539 PCDHB12Q9Y5F1 795 aa9.06□□□□□ -0.96
SF3B3-212ENST00000568539 FHOD1Q9Y613 1164 aa9.06□□□□□ -0.96
SF3B3-212ENST00000568539 SF3B1O75533 1304 aaKnown RBP eCLIP9.05□□□□□ -0.96
SF3B3-212ENST00000568539 TTC3P53804 2025 aa9.05□□□□□ -0.96
SF3B3-212ENST00000568539 TTC28Q96AY4 2481 aa9.05□□□□□ -0.96
SF3B3-212ENST00000568539 C5orf67F2Z3F1 127 aa9.05□□□□□ -0.96
SF3B3-212ENST00000568539 CYB561D2O14569 222 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms