RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 ECI1P42126 302 aa5.64□□□□□ -1.51
LDLR-209ENST00000558528 HALP42357 657 aa5.64□□□□□ -1.51
LDLR-209ENST00000558528 TECP42680 631 aa5.64□□□□□ -1.51
LDLR-209ENST00000558528 SNAP25P60880 206 aa5.64□□□□□ -1.51
LDLR-209ENST00000558528 RPS6P62753 249 aaKnown RBP5.64□□□□□ -1.51
LDLR-209ENST00000558528 CAP1Q01518 475 aa5.64□□□□□ -1.51
LDLR-209ENST00000558528 PAK1Q13153 545 aa5.64□□□□□ -1.51
LDLR-209ENST00000558528 SNW1Q13573 536 aaKnown RBP5.64□□□□□ -1.51
LDLR-209ENST00000558528 BAATQ14032 418 aaPredicted RBP5.64□□□□□ -1.51
LDLR-209ENST00000558528 SLBPQ14493 270 aaKnown RBP eCLIP5.64□□□□□ -1.51
LDLR-209ENST00000558528 KCTD2Q14681 263 aa5.64□□□□□ -1.51
LDLR-209ENST00000558528 PCBP2Q15366 365 aaKnown RBP eCLIP5.64□□□□□ -1.51
LDLR-209ENST00000558528 STXBP2Q15833 593 aa5.64□□□□□ -1.51
LDLR-209ENST00000558528 CCL15Q16663 113 aa5.64□□□□□ -1.51
LDLR-209ENST00000558528 TMEM177Q53S58 311 aa5.64□□□□□ -1.51
LDLR-209ENST00000558528 PRR16Q569H4 304 aa5.64□□□□□ -1.51
LDLR-209ENST00000558528 EXOSC6Q5RKV6 272 aaKnown RBP5.64□□□□□ -1.51
LDLR-209ENST00000558528 E4F1Q66K89 784 aaPredicted RBP5.64□□□□□ -1.51
LDLR-209ENST00000558528 FAM109BQ6ICB4 259 aaPredicted RBP5.64□□□□□ -1.51
LDLR-209ENST00000558528 SHC4Q6S5L8 630 aa5.64□□□□□ -1.51
LDLR-209ENST00000558528 RBM43Q6ZSC3 357 aaKnown RBP5.64□□□□□ -1.51
LDLR-209ENST00000558528 CABP7Q86V35 215 aa5.64□□□□□ -1.51
LDLR-209ENST00000558528 PLA2G4DQ86XP0 818 aa5.64□□□□□ -1.51
LDLR-209ENST00000558528 MYLK4Q86YV6 388 aaPredicted RBP5.64□□□□□ -1.51
LDLR-209ENST00000558528 WFDC8Q8IUA0 241 aa5.64□□□□□ -1.51
LDLR-209ENST00000558528 ABRAQ8N0Z2 381 aa5.64□□□□□ -1.51
LDLR-209ENST00000558528 FIBCD1Q8N539 461 aa5.64□□□□□ -1.51
LDLR-209ENST00000558528 CLRN3Q8NCR9 226 aa5.64□□□□□ -1.51
LDLR-209ENST00000558528 REPS2Q8NFH8 660 aa5.64□□□□□ -1.51
LDLR-209ENST00000558528 RDM1Q8NG50 284 aa5.64□□□□□ -1.51
LDLR-209ENST00000558528 ATXN2LQ8WWM7 1075 aaKnown RBP5.64□□□□□ -1.51
LDLR-209ENST00000558528 CLEC4DQ8WXI8 215 aa5.64□□□□□ -1.51
LDLR-209ENST00000558528 ERO1AQ96HE7 468 aa5.64□□□□□ -1.51
LDLR-209ENST00000558528 FBXL18Q96ME1 805 aa5.64□□□□□ -1.51
LDLR-209ENST00000558528 KREMEN1Q96MU8 473 aa5.64□□□□□ -1.51
LDLR-209ENST00000558528 GSDMAQ96QA5 445 aa5.64□□□□□ -1.51
LDLR-209ENST00000558528 RMDN3Q96TC7 470 aa5.64□□□□□ -1.51
LDLR-209ENST00000558528 GDF15Q99988 308 aa5.64□□□□□ -1.51
LDLR-209ENST00000558528 PAGR1Q9BTK6 254 aa5.64□□□□□ -1.51
LDLR-209ENST00000558528 HTATIP2Q9BUP3 242 aa5.64□□□□□ -1.51
LDLR-209ENST00000558528 TEKT3Q9BXF9 490 aa5.64□□□□□ -1.51
LDLR-209ENST00000558528 FTOQ9C0B1 505 aaKnown RBP eCLIP5.64□□□□□ -1.51
LDLR-209ENST00000558528 RNF38Q9H0F5 515 aa5.64□□□□□ -1.51
LDLR-209ENST00000558528 ASCC2Q9H1I8 757 aaPredicted RBP5.64□□□□□ -1.51
LDLR-209ENST00000558528 NOL6Q9H6R4 1146 aaKnown RBP5.64□□□□□ -1.51
LDLR-209ENST00000558528 TTC12Q9H892 705 aaPredicted RBP5.64□□□□□ -1.51
LDLR-209ENST00000558528 ANLNQ9NQW6 1124 aa5.64□□□□□ -1.51
LDLR-209ENST00000558528 C14orf119Q9NWQ9 140 aa5.64□□□□□ -1.51
LDLR-209ENST00000558528 FRMD4AQ9P2Q2 1039 aaPredicted RBP5.64□□□□□ -1.51
LDLR-209ENST00000558528 KCNG1Q9UIX4 513 aa5.64□□□□□ -1.51
LDLR-209ENST00000558528 DMTF1Q9Y222 760 aa5.64□□□□□ -1.51
LDLR-209ENST00000558528 INVSQ9Y283 1065 aa5.64□□□□□ -1.51
LDLR-209ENST00000558528 NPFFR2Q9Y5X5 522 aa5.64□□□□□ -1.51
LDLR-209ENST00000558528 ZNF646O15015 1829 aaPredicted RBP5.64□□□□□ -1.51
LDLR-209ENST00000558528 SSC5DA1L4H1 1573 aa5.63□□□□□ -1.51
LDLR-209ENST00000558528 ABHD14A-ACY1A0A1B0GW23 586 aa5.63□□□□□ -1.51
LDLR-209ENST00000558528 SYCE3A1L190 88 aa5.63□□□□□ -1.51
LDLR-209ENST00000558528 ASB14A6NK59 587 aa5.63□□□□□ -1.51
LDLR-209ENST00000558528 PDHXO00330 501 aa5.63□□□□□ -1.51
LDLR-209ENST00000558528 KIF20AO95235 890 aa5.63□□□□□ -1.51
LDLR-209ENST00000558528 TDP2O95551 362 aa5.63□□□□□ -1.51
LDLR-209ENST00000558528 ZBED1O96006 694 aa5.63□□□□□ -1.51
LDLR-209ENST00000558528 FCER1AP12319 257 aa5.63□□□□□ -1.51
LDLR-209ENST00000558528 XRCC6P12956 609 aaKnown RBP eCLIP5.63□□□□□ -1.51
LDLR-209ENST00000558528 RHCEP18577 417 aa5.63□□□□□ -1.51
LDLR-209ENST00000558528 MAPK4P31152 587 aa5.63□□□□□ -1.51
LDLR-209ENST00000558528 HOXA13P31271 388 aaPredicted RBP5.63□□□□□ -1.51
LDLR-209ENST00000558528 SFNP31947 248 aa5.63□□□□□ -1.51
LDLR-209ENST00000558528 STAT6P42226 847 aa5.63□□□□□ -1.51
LDLR-209ENST00000558528 SARSP49591 514 aaKnown RBP5.63□□□□□ -1.51
LDLR-209ENST00000558528 MECP2P51608 486 aaKnown RBP5.63□□□□□ -1.51
LDLR-209ENST00000558528 POU4F1Q01851 419 aa5.63□□□□□ -1.51
LDLR-209ENST00000558528 RHDQ02161 417 aa5.63□□□□□ -1.51
LDLR-209ENST00000558528 BIRC3Q13489 604 aa5.63□□□□□ -1.51
LDLR-209ENST00000558528 POSTNQ15063 836 aa5.63□□□□□ -1.51
LDLR-209ENST00000558528 SF1Q15637 639 aaKnown RBP5.63□□□□□ -1.51
LDLR-209ENST00000558528 STX1AQ16623 288 aa5.63□□□□□ -1.51
LDLR-209ENST00000558528 TREML2Q5T2D2 321 aa5.63□□□□□ -1.51
LDLR-209ENST00000558528 IQCEQ6IPM2 695 aa5.63□□□□□ -1.51
LDLR-209ENST00000558528 GPAT2Q6NUI2 795 aa5.63□□□□□ -1.51
LDLR-209ENST00000558528 ABHD17CQ6PCB6 329 aa5.63□□□□□ -1.51
LDLR-209ENST00000558528 VSIG10LQ86VR7 867 aa5.63□□□□□ -1.51
LDLR-209ENST00000558528 PPIL6Q8IXY8 311 aa5.63□□□□□ -1.51
LDLR-209ENST00000558528 MLKLQ8NB16 471 aa5.63□□□□□ -1.51
LDLR-209ENST00000558528 SLC35G2Q8TBE7 412 aa5.63□□□□□ -1.51
LDLR-209ENST00000558528 CHTF18Q8WVB6 975 aa5.63□□□□□ -1.51
LDLR-209ENST00000558528 RNF141Q8WVD5 230 aa5.63□□□□□ -1.51
LDLR-209ENST00000558528 CRYGNQ8WXF5 182 aa5.63□□□□□ -1.51
LDLR-209ENST00000558528 SMARCE1Q969G3 411 aa5.63□□□□□ -1.51
LDLR-209ENST00000558528 DHX58Q96C10 678 aa5.63□□□□□ -1.51
LDLR-209ENST00000558528 CHAMP1Q96JM3 812 aa5.63□□□□□ -1.51
LDLR-209ENST00000558528 CLMNQ96JQ2 1002 aa5.63□□□□□ -1.51
LDLR-209ENST00000558528 CLIC6Q96NY7 704 aa5.63□□□□□ -1.51
LDLR-209ENST00000558528 DPH2Q9BQC3 489 aaPredicted RBP5.63□□□□□ -1.51
LDLR-209ENST00000558528 PDCD2LQ9BRP1 358 aa5.63□□□□□ -1.51
LDLR-209ENST00000558528 ZNF577Q9BSK1 485 aa5.63□□□□□ -1.51
LDLR-209ENST00000558528 POLR3CQ9BUI4 534 aaPredicted RBP5.63□□□□□ -1.51
LDLR-209ENST00000558528 TMEM60Q9H2L4 133 aa5.63□□□□□ -1.51
LDLR-209ENST00000558528 JPH1Q9HDC5 661 aaPredicted RBP5.63□□□□□ -1.51
LDLR-209ENST00000558528 TUFT1Q9NNX1 390 aa5.63□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms