RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 CCDC195A0A1B0GUA6 201 aa13.05□□□□□ -0.32
LDLR-205ENST00000557933 TLR3O15455 904 aaKnown RBP13.05□□□□□ -0.32
LDLR-205ENST00000557933 SMIM24O75264 130 aa13.05□□□□□ -0.32
LDLR-205ENST00000557933 KITP10721 976 aa13.05□□□□□ -0.32
LDLR-205ENST00000557933 MXRA7P84157 204 aa13.05□□□□□ -0.32
LDLR-205ENST00000557933 PTK6Q13882 451 aa13.05□□□□□ -0.32
LDLR-205ENST00000557933 CLEC16AQ2KHT3 1053 aa13.05□□□□□ -0.32
LDLR-205ENST00000557933 MSS51Q4VC12 460 aa13.05□□□□□ -0.32
LDLR-205ENST00000557933 CYP4A22Q5TCH4 519 aa13.05□□□□□ -0.32
LDLR-205ENST00000557933 ANKRD22Q5VYY1 191 aa13.05□□□□□ -0.32
LDLR-205ENST00000557933 TMEM154Q6P9G4 183 aa13.05□□□□□ -0.32
LDLR-205ENST00000557933 NLRP9Q7RTR0 991 aa13.05□□□□□ -0.32
LDLR-205ENST00000557933 TRABD2AQ86V40 505 aa13.05□□□□□ -0.32
LDLR-205ENST00000557933 ARMC2Q8NEN0 867 aa13.05□□□□□ -0.32
LDLR-205ENST00000557933 MAML1Q92585 1016 aa13.05□□□□□ -0.32
LDLR-205ENST00000557933 ZBTB45Q96K62 511 aaPredicted RBP13.05□□□□□ -0.32
LDLR-205ENST00000557933 PDGFDQ9GZP0 370 aaPredicted RBP13.05□□□□□ -0.32
LDLR-205ENST00000557933 ZFATQ9P243 1243 aa13.05□□□□□ -0.32
LDLR-205ENST00000557933 PTPRJQ12913 1337 aa13.04□□□□□ -0.32
LDLR-205ENST00000557933 ADGRA3Q8IWK6 1321 aa13.04□□□□□ -0.32
LDLR-205ENST00000557933 ATP4AP20648 1035 aa13.04□□□□□ -0.32
LDLR-205ENST00000557933 KPNB1Q14974 876 aaKnown RBP13.04□□□□□ -0.32
LDLR-205ENST00000557933 RCN1Q15293 331 aa13.04□□□□□ -0.32
LDLR-205ENST00000557933 SEPT7Q16181 437 aaKnown RBP13.04□□□□□ -0.32
LDLR-205ENST00000557933 LRRC36Q1X8D7 754 aa13.04□□□□□ -0.32
LDLR-205ENST00000557933 SLC39A4Q6P5W5 647 aa13.04□□□□□ -0.32
LDLR-205ENST00000557933 CCDC33Q8N5R6 958 aa13.04□□□□□ -0.32
LDLR-205ENST00000557933 GBP7Q8N8V2 638 aaPredicted RBP13.04□□□□□ -0.32
LDLR-205ENST00000557933 FBXO27Q8NI29 283 aa13.04□□□□□ -0.32
LDLR-205ENST00000557933 CLPTM1LQ96KA5 538 aa13.04□□□□□ -0.32
LDLR-205ENST00000557933 CYTH2Q99418 400 aa13.04□□□□□ -0.32
LDLR-205ENST00000557933 ARL8BQ9NVJ2 186 aa13.04□□□□□ -0.32
LDLR-205ENST00000557933 ANKFY1Q9P2R3 1169 aa13.04□□□□□ -0.32
LDLR-205ENST00000557933 IVNS1ABPQ9Y6Y0 642 aa13.04□□□□□ -0.32
LDLR-205ENST00000557933 LRRD1A4D1F6 860 aa13.04□□□□□ -0.32
LDLR-205ENST00000557933 GZMAP12544 262 aa13.04□□□□□ -0.32
LDLR-205ENST00000557933 CALB2P22676 271 aa13.04□□□□□ -0.32
LDLR-205ENST00000557933 ATP5DP30049 168 aa13.04□□□□□ -0.32
LDLR-205ENST00000557933 NPTX2P47972 431 aa13.04□□□□□ -0.32
LDLR-205ENST00000557933 GDF10P55107 478 aa13.04□□□□□ -0.32
LDLR-205ENST00000557933 IRX4P78413 519 aa13.04□□□□□ -0.32
LDLR-205ENST00000557933 ZBTB16Q05516 673 aa13.04□□□□□ -0.32
LDLR-205ENST00000557933 AOC3Q16853 763 aa13.04□□□□□ -0.32
LDLR-205ENST00000557933 ZC3H18Q86VM9 953 aaKnown RBP13.04□□□□□ -0.32
LDLR-205ENST00000557933 ANKRD35Q8N283 1001 aa13.04□□□□□ -0.32
LDLR-205ENST00000557933 CCHCR1Q8TD31 782 aa13.04□□□□□ -0.32
LDLR-205ENST00000557933 TTC17Q96AE7 1141 aa13.04□□□□□ -0.32
LDLR-205ENST00000557933 TRIM56Q9BRZ2 755 aaKnown RBP13.04□□□□□ -0.32
LDLR-205ENST00000557933 ZWILCHQ9H900 591 aa13.04□□□□□ -0.32
LDLR-205ENST00000557933 WASF2Q9Y6W5 498 aa13.04□□□□□ -0.32
LDLR-205ENST00000557933 A0A1B0GVG6 124 aa13.03□□□□□ -0.32
LDLR-205ENST00000557933 TCRBV7S3A2A0A539 114 aa13.03□□□□□ -0.32
LDLR-205ENST00000557933 F5H423 210 aaPredicted RBP13.03□□□□□ -0.32
LDLR-205ENST00000557933 PIK3R2O00459 728 aa13.03□□□□□ -0.32
LDLR-205ENST00000557933 KRT1P04264 644 aa13.03□□□□□ -0.32
LDLR-205ENST00000557933 UBTFL6P0CB48 400 aaPredicted RBP13.03□□□□□ -0.32
LDLR-205ENST00000557933 ZCCHC18P0CG32 403 aa13.03□□□□□ -0.32
LDLR-205ENST00000557933 CCNB1P14635 433 aa13.03□□□□□ -0.32
LDLR-205ENST00000557933 SERPINB3P29508 390 aa13.03□□□□□ -0.32
LDLR-205ENST00000557933 PTGER2P43116 358 aa13.03□□□□□ -0.32
LDLR-205ENST00000557933 POLE2P56282 527 aa13.03□□□□□ -0.32
LDLR-205ENST00000557933 BLMHQ13867 455 aa13.03□□□□□ -0.32
LDLR-205ENST00000557933 RCN2Q14257 317 aa13.03□□□□□ -0.32
LDLR-205ENST00000557933 SPARCL1Q14515 664 aa13.03□□□□□ -0.32
LDLR-205ENST00000557933 BBS9Q3SYG4 887 aa13.03□□□□□ -0.32
LDLR-205ENST00000557933 STK32AQ8WU08 396 aa13.03□□□□□ -0.32
LDLR-205ENST00000557933 WDR60Q8WVS4 1066 aa13.03□□□□□ -0.32
LDLR-205ENST00000557933 ZNF516Q92618 1163 aa13.03□□□□□ -0.32
LDLR-205ENST00000557933 CCDC77Q9BR77 488 aa13.03□□□□□ -0.32
LDLR-205ENST00000557933 RAVER2Q9HCJ3 691 aaKnown RBP13.03□□□□□ -0.32
LDLR-205ENST00000557933 TXLNGQ9NUQ3 528 aa13.03□□□□□ -0.32
LDLR-205ENST00000557933 SEL1LQ9UBV2 794 aa13.03□□□□□ -0.32
LDLR-205ENST00000557933 TJP2Q9UDY2 1190 aa13.03□□□□□ -0.32
LDLR-205ENST00000557933 CCPG1Q9ULG6 757 aa13.03□□□□□ -0.32
LDLR-205ENST00000557933 ATAD5Q96QE3 1844 aa13.03□□□□□ -0.32
LDLR-205ENST00000557933 RAD17O75943 681 aa13.03□□□□□ -0.32
LDLR-205ENST00000557933 FAM155BO75949 473 aa13.03□□□□□ -0.32
LDLR-205ENST00000557933 GGPS1O95749 300 aa13.03□□□□□ -0.32
LDLR-205ENST00000557933 HIRAP54198 1017 aaPredicted RBP13.03□□□□□ -0.32
LDLR-205ENST00000557933 CDCA2Q69YH5 1023 aaPredicted RBP13.03□□□□□ -0.32
LDLR-205ENST00000557933 SCARA5Q6ZMJ2 495 aa13.03□□□□□ -0.32
LDLR-205ENST00000557933 MCEEQ96PE7 176 aa13.03□□□□□ -0.32
LDLR-205ENST00000557933 GINM1Q9NU53 330 aa13.03□□□□□ -0.32
LDLR-205ENST00000557933 UVRAGQ9P2Y5 699 aa13.03□□□□□ -0.32
LDLR-205ENST00000557933 HEY2Q9UBP5 337 aa13.03□□□□□ -0.32
LDLR-205ENST00000557933 ZBTB12Q9Y330 459 aaPredicted RBP13.03□□□□□ -0.32
LDLR-205ENST00000557933 PPP1R12AO14974 1030 aaPredicted RBP13.02□□□□□ -0.32
LDLR-205ENST00000557933 MAPK13O15264 365 aa13.02□□□□□ -0.32
LDLR-205ENST00000557933 GNAT1P11488 350 aa13.02□□□□□ -0.32
LDLR-205ENST00000557933 GBP1P32455 592 aa13.02□□□□□ -0.32
LDLR-205ENST00000557933 TCP10LQ8TDR4 215 aa13.02□□□□□ -0.32
LDLR-205ENST00000557933 MECRQ9BV79 373 aa13.02□□□□□ -0.32
LDLR-205ENST00000557933 STRA6Q9BX79 667 aa13.02□□□□□ -0.32
LDLR-205ENST00000557933 PLVAPQ9BX97 442 aa13.02□□□□□ -0.32
LDLR-205ENST00000557933 SHCBP1LQ9BZQ2 653 aa13.02□□□□□ -0.32
LDLR-205ENST00000557933 NMRK1Q9NWW6 199 aa13.02□□□□□ -0.32
LDLR-205ENST00000557933 CYP39A1Q9NYL5 469 aa13.02□□□□□ -0.32
LDLR-205ENST00000557933 PCDHB4Q9Y5E5 795 aa13.02□□□□□ -0.32
LDLR-205ENST00000557933 USH1CQ9Y6N9 552 aa13.02□□□□□ -0.32
LDLR-205ENST00000557933 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.02□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms