RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.47□□□□□ -0.253e-6■■■■■ 44
SHMT2-229ENST00000557348 FAM169AQ9Y6X4 670 aa13.47□□□□□ -0.25
SHMT2-229ENST00000557348 GOLGA6BA6NDN3 693 aa13.46□□□□□ -0.26
SHMT2-229ENST00000557348 LACTBL1A8MY62 500 aa13.46□□□□□ -0.26
SHMT2-229ENST00000557348 THAP12O43422 761 aa13.46□□□□□ -0.26
SHMT2-229ENST00000557348 GPR32O75388 356 aa13.46□□□□□ -0.26
SHMT2-229ENST00000557348 CALB1P05937 261 aa13.46□□□□□ -0.26
SHMT2-229ENST00000557348 DARSP14868 501 aaKnown RBP13.46□□□□□ -0.26
SHMT2-229ENST00000557348 HOXC8P31273 242 aa13.46□□□□□ -0.26
SHMT2-229ENST00000557348 SLC1A1P43005 524 aa13.46□□□□□ -0.26
SHMT2-229ENST00000557348 NKX3-2P78367 333 aa13.46□□□□□ -0.26
SHMT2-229ENST00000557348 ADAM17P78536 824 aa13.46□□□□□ -0.26
SHMT2-229ENST00000557348 HTRA3P83110 453 aa13.46□□□□□ -0.26
SHMT2-229ENST00000557348 CCL14Q16627 93 aa13.46□□□□□ -0.26
SHMT2-229ENST00000557348 PHF13Q86YI8 300 aaPredicted RBP13.46□□□□□ -0.26
SHMT2-229ENST00000557348 C7orf31Q8N865 590 aa13.46□□□□□ -0.26
SHMT2-229ENST00000557348 EIF1ADQ8N9N8 165 aaKnown RBP13.46□□□□□ -0.26
SHMT2-229ENST00000557348 CABS1Q96KC9 395 aa13.46□□□□□ -0.26
SHMT2-229ENST00000557348 PSMB7Q99436 277 aa13.46□□□□□ -0.26
SHMT2-229ENST00000557348 NUP85Q9BW27 656 aa13.46□□□□□ -0.26
SHMT2-229ENST00000557348 XYLT2Q9H1B5 865 aa13.46□□□□□ -0.26
SHMT2-229ENST00000557348 CISHQ9NSE2 258 aa13.46□□□□□ -0.26
SHMT2-229ENST00000557348 CNOT8Q9UFF9 292 aaKnown RBP13.46□□□□□ -0.26
SHMT2-229ENST00000557348 PCDHGC3Q9UN70 934 aa13.46□□□□□ -0.26
SHMT2-229ENST00000557348 GOLGA6L10A0A0M3HER8 536 aa13.45□□□□□ -0.26
SHMT2-229ENST00000557348 XPOTO43592 962 aaKnown RBP13.45□□□□□ -0.26
SHMT2-229ENST00000557348 CEP104O60308 925 aa13.45□□□□□ -0.26
SHMT2-229ENST00000557348 KIAA0754O94854 1291 aa13.45□□□□□ -0.26
SHMT2-229ENST00000557348 CST3P01034 146 aaPredicted RBP13.45□□□□□ -0.26
SHMT2-229ENST00000557348 TFRCP02786 760 aaKnown RBP13.45□□□□□ -0.26
SHMT2-229ENST00000557348 CYBAP13498 195 aa13.45□□□□□ -0.26
SHMT2-229ENST00000557348 EIF4BP23588 611 aaKnown RBP13.45□□□□□ -0.26
SHMT2-229ENST00000557348 CTNNA2P26232 953 aa13.45□□□□□ -0.26
SHMT2-229ENST00000557348 GJA9P57773 515 aa13.45□□□□□ -0.26
SHMT2-229ENST00000557348 OSTNP61366 133 aa13.45□□□□□ -0.26
SHMT2-229ENST00000557348 RBP5P82980 135 aa13.45□□□□□ -0.26
SHMT2-229ENST00000557348 PURAQ00577 322 aaKnown RBP13.45□□□□□ -0.26
SHMT2-229ENST00000557348 TAP1Q03518 808 aa13.45□□□□□ -0.26
SHMT2-229ENST00000557348 C2orf54Q08AI8 447 aa13.45□□□□□ -0.26
SHMT2-229ENST00000557348 MYO1EQ12965 1108 aa13.45□□□□□ -0.26
SHMT2-229ENST00000557348 KIZQ2M2Z5 673 aa13.45□□□□□ -0.26
SHMT2-229ENST00000557348 RSPH3Q86UC2 560 aa13.45□□□□□ -0.26
SHMT2-229ENST00000557348 TMEM35BQ8NCS4 154 aa13.45□□□□□ -0.26
SHMT2-229ENST00000557348 MAGEC3Q8TD91 643 aa13.45□□□□□ -0.26
SHMT2-229ENST00000557348 P3H4Q92791 437 aa13.45□□□□□ -0.26
SHMT2-229ENST00000557348 ZNF668Q96K58 619 aaPredicted RBP13.45□□□□□ -0.26
SHMT2-229ENST00000557348 MTG1Q9BT17 334 aaPredicted RBP13.45□□□□□ -0.26
SHMT2-229ENST00000557348 BCO2Q9BYV7 579 aa13.45□□□□□ -0.26
SHMT2-229ENST00000557348 UPF3AQ9H1J1 476 aaKnown RBP13.45□□□□□ -0.26
SHMT2-229ENST00000557348 STIM2Q9P246 746 aa13.45□□□□□ -0.26
SHMT2-229ENST00000557348 TMEM59LQ9UK28 342 aa13.45□□□□□ -0.26
SHMT2-229ENST00000557348 ALG6Q9Y672 507 aa13.45□□□□□ -0.26
SHMT2-229ENST00000557348 M0QZ92 97 aa13.44□□□□□ -0.26
SHMT2-229ENST00000557348 KRT19P08727 400 aa13.44□□□□□ -0.26
SHMT2-229ENST00000557348 CALRP27797 417 aaKnown RBP13.44□□□□□ -0.26
SHMT2-229ENST00000557348 ASPAP45381 313 aa13.44□□□□□ -0.26
SHMT2-229ENST00000557348 CRYBB1P53674 252 aaPredicted RBP13.44□□□□□ -0.26
SHMT2-229ENST00000557348 EPHB4P54760 987 aa13.44□□□□□ -0.26
SHMT2-229ENST00000557348 NOMO3P69849 1222 aa13.44□□□□□ -0.26
SHMT2-229ENST00000557348 LACTBP83111 547 aaPredicted RBP13.44□□□□□ -0.26
SHMT2-229ENST00000557348 JADE1Q6IE81 842 aa13.44□□□□□ -0.26
SHMT2-229ENST00000557348 MON1BQ7L1V2 547 aa13.44□□□□□ -0.26
SHMT2-229ENST00000557348 CEP120Q8N960 986 aa13.44□□□□□ -0.26
SHMT2-229ENST00000557348 AENQ8WTP8 325 aaKnown RBP13.44□□□□□ -0.26
SHMT2-229ENST00000557348 CAVIN3Q969G5 261 aa13.44□□□□□ -0.26
SHMT2-229ENST00000557348 ZBTB10Q96DT7 871 aa13.44□□□□□ -0.26
SHMT2-229ENST00000557348 CPB2Q96IY4 423 aa13.44□□□□□ -0.26
SHMT2-229ENST00000557348 RUNDC3BQ96NL0 473 aa13.44□□□□□ -0.26
SHMT2-229ENST00000557348 FAM49AQ9H0Q0 323 aaPredicted RBP13.44□□□□□ -0.26
SHMT2-229ENST00000557348 CXorf56Q9H5V9 222 aa13.44□□□□□ -0.26
SHMT2-229ENST00000557348 SLITRK6Q9H5Y7 841 aa13.44□□□□□ -0.26
SHMT2-229ENST00000557348 STRIP2Q9ULQ0 834 aa13.44□□□□□ -0.26
SHMT2-229ENST00000557348 PACSIN2Q9UNF0 486 aaPredicted RBP13.44□□□□□ -0.26
SHMT2-229ENST00000557348 COG5Q9UP83 839 aa13.44□□□□□ -0.26
SHMT2-229ENST00000557348 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.44□□□□□ -0.26
SHMT2-229ENST00000557348 CHUKO15111 745 aa13.44□□□□□ -0.26
SHMT2-229ENST00000557348 SPOPO43791 374 aa13.44□□□□□ -0.26
SHMT2-229ENST00000557348 CAPN15O75808 1086 aa13.44□□□□□ -0.26
SHMT2-229ENST00000557348 NFICP08651 508 aa13.44□□□□□ -0.26
SHMT2-229ENST00000557348 ATF7P17544 494 aaPredicted RBP13.44□□□□□ -0.26
SHMT2-229ENST00000557348 HNRNPH1P31943 449 aaKnown RBP13.44□□□□□ -0.26
SHMT2-229ENST00000557348 CDH5P33151 784 aaPredicted RBP13.44□□□□□ -0.26
SHMT2-229ENST00000557348 CTNNA1P35221 906 aaKnown RBP13.44□□□□□ -0.26
SHMT2-229ENST00000557348 PSMC4P43686 418 aa13.44□□□□□ -0.26
SHMT2-229ENST00000557348 STILQ15468 1287 aa13.44□□□□□ -0.26
SHMT2-229ENST00000557348 SLC10A6Q3KNW5 377 aa13.44□□□□□ -0.26
SHMT2-229ENST00000557348 SEL1L2Q5TEA6 688 aa13.44□□□□□ -0.26
SHMT2-229ENST00000557348 NAA35Q5VZE5 725 aa13.44□□□□□ -0.26
SHMT2-229ENST00000557348 IFT20Q8IY31 132 aa13.44□□□□□ -0.26
SHMT2-229ENST00000557348 C1orf127Q8N9H9 656 aa13.44□□□□□ -0.26
SHMT2-229ENST00000557348 MAIP1Q8WWC4 291 aa13.44□□□□□ -0.26
SHMT2-229ENST00000557348 ZNF606Q8WXB4 792 aa13.44□□□□□ -0.26
SHMT2-229ENST00000557348 TRIM6Q9C030 488 aaPredicted RBP13.44□□□□□ -0.26
SHMT2-229ENST00000557348 RBM12Q9NTZ6 932 aaKnown RBP13.44□□□□□ -0.26
SHMT2-229ENST00000557348 ADAM22Q9P0K1 906 aa13.44□□□□□ -0.26
SHMT2-229ENST00000557348 KIAA1257Q9ULG3 409 aa13.44□□□□□ -0.26
SHMT2-229ENST00000557348 NOC2LQ9Y3T9 749 aaKnown RBP13.44□□□□□ -0.26
SHMT2-229ENST00000557348 MYO1FO00160 1098 aa13.43□□□□□ -0.26
SHMT2-229ENST00000557348 DDX3YO15523 660 aaKnown RBP13.43□□□□□ -0.26
SHMT2-229ENST00000557348 SEPT4O43236 478 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms