RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 CES5AQ6NT32 575 aa21.4■■□□□ 1.02
CPSF1-209ENST00000532725 TMC5Q6UXY8 1006 aa21.4■■□□□ 1.02
CPSF1-209ENST00000532725 GPR149Q86SP6 731 aa21.4■■□□□ 1.02
CPSF1-209ENST00000532725 USP37Q86T82 979 aa21.4■■□□□ 1.02
CPSF1-209ENST00000532725 TMC2Q8TDI7 906 aa21.4■■□□□ 1.02
CPSF1-209ENST00000532725 DHTKD1Q96HY7 919 aaPredicted RBP21.4■■□□□ 1.02
CPSF1-209ENST00000532725 OXCT2Q9BYC2 517 aaPredicted RBP21.4■■□□□ 1.02
CPSF1-209ENST00000532725 GDAP2Q9NXN4 497 aa21.4■■□□□ 1.02
CPSF1-209ENST00000532725 PRKAG3Q9UGI9 489 aa21.4■■□□□ 1.02
CPSF1-209ENST00000532725 C5orf42Q9H799 3197 aa21.4■■□□□ 1.02
CPSF1-209ENST00000532725 PLXNA3P51805 1871 aa21.39■■□□□ 1.02
CPSF1-209ENST00000532725 CCDC195A0A1B0GUA6 201 aa21.39■■□□□ 1.01
CPSF1-209ENST00000532725 ARHGEF37A1IGU5 675 aa21.39■■□□□ 1.01
CPSF1-209ENST00000532725 BIN1O00499 593 aa21.39■■□□□ 1.01
CPSF1-209ENST00000532725 RFPL2O75678 378 aa21.39■■□□□ 1.01
CPSF1-209ENST00000532725 WEE2P0C1S8 567 aa21.39■■□□□ 1.01
CPSF1-209ENST00000532725 DLG4P78352 724 aa21.39■■□□□ 1.01
CPSF1-209ENST00000532725 CBX2Q14781 532 aaPredicted RBP21.39■■□□□ 1.01
CPSF1-209ENST00000532725 ATAT1Q5SQI0 421 aa21.39■■□□□ 1.01
CPSF1-209ENST00000532725 C1orf220Q5T0J3 134 aa21.39■■□□□ 1.01
CPSF1-209ENST00000532725 WSCD1Q658N2 575 aa21.39■■□□□ 1.01
CPSF1-209ENST00000532725 ELMSAN1Q6PJG2 1045 aa21.39■■□□□ 1.01
CPSF1-209ENST00000532725 HPDLQ96IR7 371 aa21.39■■□□□ 1.01
CPSF1-209ENST00000532725 UHRF1Q96T88 793 aaPredicted RBP21.39■■□□□ 1.01
CPSF1-209ENST00000532725 DSEQ9UL01 958 aa21.39■■□□□ 1.01
CPSF1-209ENST00000532725 MTCL1Q9Y4B5 1905 aaKnown RBP21.39■■□□□ 1.01
CPSF1-209ENST00000532725 WDR27A2RRH5 827 aa21.38■■□□□ 1.01
CPSF1-209ENST00000532725 IKBKBO14920 756 aa21.38■■□□□ 1.01
CPSF1-209ENST00000532725 ZMYND10O75800 440 aa21.38■■□□□ 1.01
CPSF1-209ENST00000532725 C4BPAP04003 597 aaKnown RBP21.38■■□□□ 1.01
CPSF1-209ENST00000532725 CCNE1P24864 410 aa21.38■■□□□ 1.01
CPSF1-209ENST00000532725 PSMC2P35998 433 aaKnown RBP21.38■■□□□ 1.01
CPSF1-209ENST00000532725 AP3M2P53677 418 aa21.38■■□□□ 1.01
CPSF1-209ENST00000532725 ARPP19P56211 112 aa21.38■■□□□ 1.01
CPSF1-209ENST00000532725 UVSSAQ2YD98 709 aa21.38■■□□□ 1.01
CPSF1-209ENST00000532725 C15orf39Q6ZRI6 1047 aa21.38■■□□□ 1.01
CPSF1-209ENST00000532725 ZC3H3Q8IXZ2 948 aaKnown RBP21.38■■□□□ 1.01
CPSF1-209ENST00000532725 ZNF707Q96C28 371 aaPredicted RBP21.38■■□□□ 1.01
CPSF1-209ENST00000532725 RTP3Q9BQQ7 232 aa21.38■■□□□ 1.01
CPSF1-209ENST00000532725 RHOBTB2Q9BYZ6 727 aa21.38■■□□□ 1.01
CPSF1-209ENST00000532725 CLSTN2Q9H4D0 955 aa21.38■■□□□ 1.01
CPSF1-209ENST00000532725 ZDHHC7Q9NXF8 308 aa21.38■■□□□ 1.01
CPSF1-209ENST00000532725 C19orf67A6NJJ6 358 aa21.37■■□□□ 1.01
CPSF1-209ENST00000532725 OR6C75A6NL08 312 aa21.37■■□□□ 1.01
CPSF1-209ENST00000532725 SPDYE4A6NLX3 237 aa21.37■■□□□ 1.01
CPSF1-209ENST00000532725 CETN3O15182 167 aa21.37■■□□□ 1.01
CPSF1-209ENST00000532725 ATF2P15336 505 aa21.37■■□□□ 1.01
CPSF1-209ENST00000532725 PPP1R2P41236 205 aa21.37■■□□□ 1.01
CPSF1-209ENST00000532725 MTHFRP42898 656 aa21.37■■□□□ 1.01
CPSF1-209ENST00000532725 ZP2Q05996 745 aa21.37■■□□□ 1.01
CPSF1-209ENST00000532725 BFSP1Q12934 665 aa21.37■■□□□ 1.01
CPSF1-209ENST00000532725 MYO1EQ12965 1108 aa21.37■■□□□ 1.01
CPSF1-209ENST00000532725 STIM1Q13586 685 aa21.37■■□□□ 1.01
CPSF1-209ENST00000532725 TPGS2Q68CL5 300 aa21.37■■□□□ 1.01
CPSF1-209ENST00000532725 CYP26C1Q6V0L0 522 aa21.37■■□□□ 1.01
CPSF1-209ENST00000532725 RTL10Q7L3V2 364 aa21.37■■□□□ 1.01
CPSF1-209ENST00000532725 LIMS2Q7Z4I7 341 aa21.37■■□□□ 1.01
CPSF1-209ENST00000532725 ADHFE1Q8IWW8 467 aa21.37■■□□□ 1.01
CPSF1-209ENST00000532725 FAM186BQ8IYM0 893 aa21.37■■□□□ 1.01
CPSF1-209ENST00000532725 TRIML1Q8N9V2 468 aa21.37■■□□□ 1.01
CPSF1-209ENST00000532725 EEF2KMTQ96G04 330 aa21.37■■□□□ 1.01
CPSF1-209ENST00000532725 RIPOR3Q96MK2 946 aa21.37■■□□□ 1.01
CPSF1-209ENST00000532725 NECTIN4Q96NY8 510 aa21.37■■□□□ 1.01
CPSF1-209ENST00000532725 PHF7Q9BWX1 381 aaPredicted RBP21.37■■□□□ 1.01
CPSF1-209ENST00000532725 PRKD2Q9BZL6 878 aa21.37■■□□□ 1.01
CPSF1-209ENST00000532725 CD320Q9NPF0 282 aa21.37■■□□□ 1.01
CPSF1-209ENST00000532725 R3HCC1Q9Y3T6 440 aaKnown RBP21.37■■□□□ 1.01
CPSF1-209ENST00000532725 CUL9Q8IWT3 2517 aa21.36■■□□□ 1.01
CPSF1-209ENST00000532725 TRIM49BA6NDI0 452 aa21.36■■□□□ 1.01
CPSF1-209ENST00000532725 PSMA7O14818 248 aa21.36■■□□□ 1.01
CPSF1-209ENST00000532725 VAMP7P51809 220 aa21.36■■□□□ 1.01
CPSF1-209ENST00000532725 FKBP3Q00688 224 aaKnown RBP21.36■■□□□ 1.01
CPSF1-209ENST00000532725 LRRC63Q05C16 580 aa21.36■■□□□ 1.01
CPSF1-209ENST00000532725 ENPEPQ07075 957 aa21.36■■□□□ 1.01
CPSF1-209ENST00000532725 TDRD10Q5VZ19 366 aaKnown RBP21.36■■□□□ 1.01
CPSF1-209ENST00000532725 INTS8Q75QN2 995 aaKnown RBP21.36■■□□□ 1.01
CPSF1-209ENST00000532725 METTL23Q86XA0 190 aa21.36■■□□□ 1.01
CPSF1-209ENST00000532725 PDCL2Q8N4E4 241 aa21.36■■□□□ 1.01
CPSF1-209ENST00000532725 TSG101Q99816 390 aa21.36■■□□□ 1.01
CPSF1-209ENST00000532725 MKNK1Q9BUB5 465 aa21.36■■□□□ 1.01
CPSF1-209ENST00000532725 MAFFQ9ULX9 164 aa21.36■■□□□ 1.01
CPSF1-209ENST00000532725 L1RE1Q9UN81 338 aa21.36■■□□□ 1.01
CPSF1-209ENST00000532725 SNX9Q9Y5X1 595 aa21.36■■□□□ 1.01
CPSF1-209ENST00000532725 BDP1A6H8Y1 2624 aa21.35■■□□□ 1.01
CPSF1-209ENST00000532725 HUS1O60921 280 aa21.35■■□□□ 1.01
CPSF1-209ENST00000532725 SEC24AO95486 1093 aa21.35■■□□□ 1.01
CPSF1-209ENST00000532725 C8AP07357 584 aa21.35■■□□□ 1.01
CPSF1-209ENST00000532725 HNRNPA1P09651 372 aaKnown RBP eCLIP21.35■■□□□ 1.01
CPSF1-209ENST00000532725 OR4Q2P0C623 313 aa21.35■■□□□ 1.01
CPSF1-209ENST00000532725 GPR17Q13304 367 aa21.35■■□□□ 1.01
CPSF1-209ENST00000532725 SOWAHAQ2M3V2 549 aa21.35■■□□□ 1.01
CPSF1-209ENST00000532725 LIN9Q5TKA1 542 aa21.35■■□□□ 1.01
CPSF1-209ENST00000532725 RNF19BQ6ZMZ0 732 aa21.35■■□□□ 1.01
CPSF1-209ENST00000532725 DPH6Q7L8W6 267 aa21.35■■□□□ 1.01
CPSF1-209ENST00000532725 TCEAL8Q8IYN2 117 aa21.35■■□□□ 1.01
CPSF1-209ENST00000532725 THEM5Q8N1Q8 247 aa21.35■■□□□ 1.01
CPSF1-209ENST00000532725 TOP6BLQ8N6T0 577 aa21.35■■□□□ 1.01
CPSF1-209ENST00000532725 OR10T2Q8NGX3 314 aa21.35■■□□□ 1.01
CPSF1-209ENST00000532725 GPT2Q8TD30 523 aa21.35■■□□□ 1.01
CPSF1-209ENST00000532725 TMEM209Q96SK2 561 aa21.35■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms