RNA–Protein interactions for RNA: ENST00000470463.1

SND1-208, Transcript of staphylococcal nuclease and tudor domain containing 1, human

TSL 4

Gene SND1, Length 530 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SND1-208	ENST00000470463	FGFR4	P22455	802 aa		11.71	□□□□□ -0.53
SND1-208	ENST00000470463	GRK4	P32298	578 aa		11.71	□□□□□ -0.53
SND1-208	ENST00000470463	SLC1A1	P43005	524 aa		11.71	□□□□□ -0.53
SND1-208	ENST00000470463	ACLY	P53396	1101 aa		11.71	□□□□□ -0.53
SND1-208	ENST00000470463	SNX16	P57768	344 aa		11.71	□□□□□ -0.53
SND1-208	ENST00000470463	ZNF200	P98182	395 aa	Predicted RBP	11.71	□□□□□ -0.53
SND1-208	ENST00000470463	ITGA7	Q13683	1181 aa		11.71	□□□□□ -0.53
SND1-208	ENST00000470463	HIC1	Q14526	733 aa		11.71	□□□□□ -0.53
SND1-208	ENST00000470463	ZBTB6	Q15916	424 aa		11.71	□□□□□ -0.53
SND1-208	ENST00000470463	PPP2R5E	Q16537	467 aa		11.71	□□□□□ -0.53
SND1-208	ENST00000470463	FAM26D	Q5JW98	314 aa		11.71	□□□□□ -0.53
SND1-208	ENST00000470463	TWF2	Q6IBS0	349 aa	Known RBP	11.71	□□□□□ -0.53
SND1-208	ENST00000470463	MCOLN2	Q8IZK6	566 aa		11.71	□□□□□ -0.53
SND1-208	ENST00000470463	PDCL2	Q8N4E4	241 aa		11.71	□□□□□ -0.53
SND1-208	ENST00000470463	UBL4B	Q8N7F7	174 aa		11.71	□□□□□ -0.53
SND1-208	ENST00000470463	ZNF606	Q8WXB4	792 aa		11.71	□□□□□ -0.53
SND1-208	ENST00000470463	ANKRD7	Q92527	254 aa		11.71	□□□□□ -0.53
SND1-208	ENST00000470463	ZNF653	Q96CK0	615 aa		11.71	□□□□□ -0.53
SND1-208	ENST00000470463	PCDHB18P	Q96TA0	734 aa		11.71	□□□□□ -0.53
SND1-208	ENST00000470463	LHX5	Q9H2C1	402 aa		11.71	□□□□□ -0.53
SND1-208	ENST00000470463	UBN1	Q9NPG3	1134 aa		11.71	□□□□□ -0.53
SND1-208	ENST00000470463	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	11.71	□□□□□ -0.53	9e-7	■■■■■ 204.6
SND1-208	ENST00000470463	NXF1	Q9UBU9	619 aa	Known RBP	11.71	□□□□□ -0.53
SND1-208	ENST00000470463	STRIP2	Q9ULQ0	834 aa		11.71	□□□□□ -0.53
SND1-208	ENST00000470463	BARX2	Q9UMQ3	279 aa	Predicted RBP	11.71	□□□□□ -0.53
SND1-208	ENST00000470463	RECQL4	O94761	1208 aa		11.7	□□□□□ -0.54
SND1-208	ENST00000470463	VDR	P11473	427 aa		11.7	□□□□□ -0.54
SND1-208	ENST00000470463	EN2	P19622	333 aa	Predicted RBP	11.7	□□□□□ -0.54
SND1-208	ENST00000470463	CDH5	P33151	784 aa	Predicted RBP	11.7	□□□□□ -0.54
SND1-208	ENST00000470463	NOMO3	P69849	1222 aa		11.7	□□□□□ -0.54
SND1-208	ENST00000470463	IRX5	P78411	483 aa	Predicted RBP	11.7	□□□□□ -0.54
SND1-208	ENST00000470463	INCA1	Q0VD86	236 aa		11.7	□□□□□ -0.54
SND1-208	ENST00000470463	TRIM32	Q13049	653 aa		11.7	□□□□□ -0.54
SND1-208	ENST00000470463	GLE1	Q53GS7	698 aa	Known RBP	11.7	□□□□□ -0.54
SND1-208	ENST00000470463	DPH6	Q7L8W6	267 aa		11.7	□□□□□ -0.54
SND1-208	ENST00000470463	NT5DC3	Q86UY8	548 aa		11.7	□□□□□ -0.54
SND1-208	ENST00000470463	FAM228A	Q86W67	206 aa		11.7	□□□□□ -0.54
SND1-208	ENST00000470463	UNC93A	Q86WB7	457 aa		11.7	□□□□□ -0.54
SND1-208	ENST00000470463	CREG2	Q8IUH2	290 aa		11.7	□□□□□ -0.54
SND1-208	ENST00000470463	CXorf38	Q8TB03	319 aa		11.7	□□□□□ -0.54
SND1-208	ENST00000470463	ZNF564	Q8TBZ8	553 aa	Predicted RBP	11.7	□□□□□ -0.54
SND1-208	ENST00000470463	TMEM40	Q8WWA1	233 aa		11.7	□□□□□ -0.54
SND1-208	ENST00000470463	PGBD4	Q96DM1	585 aa		11.7	□□□□□ -0.54
SND1-208	ENST00000470463	HES6	Q96HZ4	224 aa		11.7	□□□□□ -0.54
SND1-208	ENST00000470463	EIF2A	Q9BY44	585 aa	Known RBP	11.7	□□□□□ -0.54
SND1-208	ENST00000470463	WNT8A	Q9H1J5	351 aa		11.7	□□□□□ -0.54
SND1-208	ENST00000470463	ABCB6	Q9NP58	842 aa		11.7	□□□□□ -0.54
SND1-208	ENST00000470463	TAS2R14	Q9NYV8	317 aa		11.7	□□□□□ -0.54
SND1-208	ENST00000470463	WDR35	Q9P2L0	1181 aa		11.7	□□□□□ -0.54
SND1-208	ENST00000470463	CNOT8	Q9UFF9	292 aa	Known RBP	11.7	□□□□□ -0.54
SND1-208	ENST00000470463	PUF60	Q9UHX1	559 aa	Known RBP	11.7	□□□□□ -0.54
SND1-208	ENST00000470463	GIT1	Q9Y2X7	761 aa		11.7	□□□□□ -0.54
SND1-208	ENST00000470463	IPP	Q9Y573	584 aa		11.7	□□□□□ -0.54
SND1-208	ENST00000470463	CIT	O14578	2027 aa		11.7	□□□□□ -0.54
SND1-208	ENST00000470463	ANK1	P16157	1881 aa		11.7	□□□□□ -0.54
SND1-208	ENST00000470463	UMODL1	Q5DID0	1318 aa		11.69	□□□□□ -0.54
SND1-208	ENST00000470463	TARSL2	A2RTX5	802 aa	Known RBP	11.69	□□□□□ -0.54
SND1-208	ENST00000470463	CCDC66	A2RUB6	948 aa		11.69	□□□□□ -0.54
SND1-208	ENST00000470463	KBTBD13	C9JR72	458 aa		11.69	□□□□□ -0.54
SND1-208	ENST00000470463	BUB1B	O60566	1050 aa	Predicted RBP	11.69	□□□□□ -0.54
SND1-208	ENST00000470463	ZNF623	O75123	536 aa		11.69	□□□□□ -0.54
SND1-208	ENST00000470463	CILP	O75339	1184 aa		11.69	□□□□□ -0.54
SND1-208	ENST00000470463	ERLIN1	O75477	346 aa		11.69	□□□□□ -0.54
SND1-208	ENST00000470463	FTCD	O95954	541 aa		11.69	□□□□□ -0.54
SND1-208	ENST00000470463	INHA	P05111	366 aa		11.69	□□□□□ -0.54
SND1-208	ENST00000470463	THPO	P40225	353 aa		11.69	□□□□□ -0.54
SND1-208	ENST00000470463	MGAT3	Q09327	533 aa		11.69	□□□□□ -0.54
SND1-208	ENST00000470463	PAK2	Q13177	524 aa		11.69	□□□□□ -0.54
SND1-208	ENST00000470463	ELF2	Q15723	593 aa		11.69	□□□□□ -0.54
SND1-208	ENST00000470463	ERCC6L	Q2NKX8	1250 aa		11.69	□□□□□ -0.54
SND1-208	ENST00000470463	SV2C	Q496J9	727 aa		11.69	□□□□□ -0.54
SND1-208	ENST00000470463	TEX35	Q5T0J7	233 aa		11.69	□□□□□ -0.54
SND1-208	ENST00000470463	UBXN11	Q5T124	520 aa		11.69	□□□□□ -0.54
SND1-208	ENST00000470463	MON1B	Q7L1V2	547 aa		11.69	□□□□□ -0.54
SND1-208	ENST00000470463	PALB2	Q86YC2	1186 aa		11.69	□□□□□ -0.54
SND1-208	ENST00000470463	ACTRT1	Q8TDG2	376 aa		11.69	□□□□□ -0.54
SND1-208	ENST00000470463	TMEM176A	Q96HP8	235 aa		11.69	□□□□□ -0.54
SND1-208	ENST00000470463	NUP85	Q9BW27	656 aa		11.69	□□□□□ -0.54
SND1-208	ENST00000470463	NT5C1A	Q9BXI3	368 aa		11.69	□□□□□ -0.54
SND1-208	ENST00000470463	CARD9	Q9H257	536 aa		11.69	□□□□□ -0.54
SND1-208	ENST00000470463	NXF3	Q9H4D5	531 aa	Known RBP	11.69	□□□□□ -0.54
SND1-208	ENST00000470463	PARVA	Q9NVD7	372 aa		11.69	□□□□□ -0.54
SND1-208	ENST00000470463	ADAM22	Q9P0K1	906 aa		11.69	□□□□□ -0.54
SND1-208	ENST00000470463	PARP2	Q9UGN5	583 aa		11.69	□□□□□ -0.54
SND1-208	ENST00000470463	TTC7A	Q9ULT0	858 aa	Predicted RBP	11.69	□□□□□ -0.54
SND1-208	ENST00000470463	ST3GAL5	Q9UNP4	418 aa		11.69	□□□□□ -0.54
SND1-208	ENST00000470463	STXBP5L	Q9Y2K9	1186 aa		11.69	□□□□□ -0.54
SND1-208	ENST00000470463	SBDS	Q9Y3A5	250 aa	Known RBP eCLIP	11.69	□□□□□ -0.54
SND1-208	ENST00000470463	NOC2L	Q9Y3T9	749 aa	Known RBP	11.69	□□□□□ -0.54
SND1-208	ENST00000470463	SMIM28	A0A1B0GU29	152 aa		11.68	□□□□□ -0.54
SND1-208	ENST00000470463	MYO1F	O00160	1098 aa		11.68	□□□□□ -0.54
SND1-208	ENST00000470463	CHRNA1	P02708	482 aa		11.68	□□□□□ -0.54
SND1-208	ENST00000470463	MYCN	P04198	464 aa	Predicted RBP	11.68	□□□□□ -0.54
SND1-208	ENST00000470463	WEE2	P0C1S8	567 aa		11.68	□□□□□ -0.54
SND1-208	ENST00000470463	ITGA4	P13612	1032 aa		11.68	□□□□□ -0.54
SND1-208	ENST00000470463	CD58	P19256	250 aa		11.68	□□□□□ -0.54
SND1-208	ENST00000470463	LRPAP1	P30533	357 aa		11.68	□□□□□ -0.54
SND1-208	ENST00000470463	TAF6	P49848	677 aa		11.68	□□□□□ -0.54
SND1-208	ENST00000470463	GSC	P56915	257 aa	Predicted RBP	11.68	□□□□□ -0.54
SND1-208	ENST00000470463	BRD3	Q15059	726 aa		11.68	□□□□□ -0.54

Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms