RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 NOMO3P69849 1222 aa22.52■■□□□ 1.2
PTPRF-207ENST00000436724 CENPCQ03188 943 aa22.52■■□□□ 1.2
PTPRF-207ENST00000436724 BRD3Q15059 726 aa22.52■■□□□ 1.2
PTPRF-207ENST00000436724 MCOLN2Q8IZK6 566 aa22.52■■□□□ 1.2
PTPRF-207ENST00000436724 MSANTD4Q8NCY6 345 aa22.52■■□□□ 1.2
PTPRF-207ENST00000436724 OSBPL7Q9BZF2 842 aa22.52■■□□□ 1.2
PTPRF-207ENST00000436724 PLEKHA5Q9HAU0 1116 aa22.52■■□□□ 1.2
PTPRF-207ENST00000436724 DDX20Q9UHI6 824 aaKnown RBP22.52■■□□□ 1.2
PTPRF-207ENST00000436724 CCDC151A5D8V7 595 aa22.51■■□□□ 1.19
PTPRF-207ENST00000436724 NSFP46459 744 aaKnown RBP22.51■■□□□ 1.19
PTPRF-207ENST00000436724 HADHBP55084 474 aaKnown RBP22.51■■□□□ 1.19
PTPRF-207ENST00000436724 ALKAL1Q6UXT8 129 aa22.51■■□□□ 1.19
PTPRF-207ENST00000436724 CD302Q8IX05 232 aa22.51■■□□□ 1.19
PTPRF-207ENST00000436724 ZNF564Q8TBZ8 553 aaPredicted RBP22.51■■□□□ 1.19
PTPRF-207ENST00000436724 AMFRQ9UKV5 643 aa22.51■■□□□ 1.19
PTPRF-207ENST00000436724 SCN1AP35498 2009 aa22.51■■□□□ 1.19
PTPRF-207ENST00000436724 M0QZ92 97 aa22.5■■□□□ 1.19
PTPRF-207ENST00000436724 RRM1P23921 792 aa22.5■■□□□ 1.19
PTPRF-207ENST00000436724 RBP5P82980 135 aa22.5■■□□□ 1.19
PTPRF-207ENST00000436724 TCEAL1Q15170 157 aa22.5■■□□□ 1.19
PTPRF-207ENST00000436724 TWF2Q6IBS0 349 aaKnown RBP22.5■■□□□ 1.19
PTPRF-207ENST00000436724 CPNE8Q86YQ8 564 aa22.5■■□□□ 1.19
PTPRF-207ENST00000436724 HES6Q96HZ4 224 aa22.5■■□□□ 1.19
PTPRF-207ENST00000436724 TWNKQ96RR1 684 aa22.5■■□□□ 1.19
PTPRF-207ENST00000436724 PNKPQ96T60 521 aa22.5■■□□□ 1.19
PTPRF-207ENST00000436724 PARP2Q9UGN5 583 aa22.5■■□□□ 1.19
PTPRF-207ENST00000436724 RAB21Q9UL25 225 aa22.5■■□□□ 1.19
PTPRF-207ENST00000436724 TRPV2Q9Y5S1 764 aa22.5■■□□□ 1.19
PTPRF-207ENST00000436724 ALG6Q9Y672 507 aa22.5■■□□□ 1.19
PTPRF-207ENST00000436724 CST5P28325 142 aaPredicted RBP22.5■■□□□ 1.19
PTPRF-207ENST00000436724 ATICP31939 592 aa22.5■■□□□ 1.19
PTPRF-207ENST00000436724 NFX1Q12986 1120 aaKnown RBP22.5■■□□□ 1.19
PTPRF-207ENST00000436724 MESDQ14696 234 aa22.5■■□□□ 1.19
PTPRF-207ENST00000436724 ZBTB6Q15916 424 aa22.5■■□□□ 1.19
PTPRF-207ENST00000436724 NT5DC4Q86YG4 428 aa22.5■■□□□ 1.19
PTPRF-207ENST00000436724 SMG8Q8ND04 991 aaKnown RBP22.5■■□□□ 1.19
PTPRF-207ENST00000436724 SPATA4Q8NEY3 305 aa22.5■■□□□ 1.19
PTPRF-207ENST00000436724 C11orf70Q9BRQ4 267 aa22.5■■□□□ 1.19
PTPRF-207ENST00000436724 VRTNQ9H8Y1 702 aa22.5■■□□□ 1.19
PTPRF-207ENST00000436724 IPPQ9Y573 584 aa22.5■■□□□ 1.19
PTPRF-207ENST00000436724 RALGAPA2Q2PPJ7 1873 aa22.5■■□□□ 1.19
PTPRF-207ENST00000436724 TUBB4BP68371 445 aa22.49■■□□□ 1.19
PTPRF-207ENST00000436724 PTGISQ16647 500 aa22.49■■□□□ 1.19
PTPRF-207ENST00000436724 LONRF2Q1L5Z9 754 aa22.49■■□□□ 1.19
PTPRF-207ENST00000436724 MON1BQ7L1V2 547 aa22.49■■□□□ 1.19
PTPRF-207ENST00000436724 ARRDC4Q8NCT1 418 aa22.49■■□□□ 1.19
PTPRF-207ENST00000436724 WHAMMQ8TF30 809 aa22.49■■□□□ 1.19
PTPRF-207ENST00000436724 TRIM7Q9C029 511 aa22.49■■□□□ 1.19
PTPRF-207ENST00000436724 CNTN3Q9P232 1028 aa22.49■■□□□ 1.19
PTPRF-207ENST00000436724 ST3GAL5Q9UNP4 418 aa22.49■■□□□ 1.19
PTPRF-207ENST00000436724 PAFAH1B1P43034 410 aa22.49■■□□□ 1.19
PTPRF-207ENST00000436724 CFAP221Q4G0U5 840 aa22.49■■□□□ 1.19
PTPRF-207ENST00000436724 RSPH3Q86UC2 560 aa22.49■■□□□ 1.19
PTPRF-207ENST00000436724 ZNF296Q8WUU4 475 aaPredicted RBP22.49■■□□□ 1.19
PTPRF-207ENST00000436724 SENP6Q9GZR1 1112 aaPredicted RBP22.49■■□□□ 1.19
PTPRF-207ENST00000436724 TRMT13Q9NUP7 481 aaKnown RBP22.49■■□□□ 1.19
PTPRF-207ENST00000436724 RPS6KA5O75582 802 aa22.48■■□□□ 1.19
PTPRF-207ENST00000436724 MTA2O94776 668 aa22.48■■□□□ 1.19
PTPRF-207ENST00000436724 THPOP40225 353 aa22.48■■□□□ 1.19
PTPRF-207ENST00000436724 RAD23BP54727 409 aa22.48■■□□□ 1.19
PTPRF-207ENST00000436724 TRIM72Q6ZMU5 477 aa22.48■■□□□ 1.19
PTPRF-207ENST00000436724 MMS22LQ6ZRQ5 1243 aa22.48■■□□□ 1.19
PTPRF-207ENST00000436724 ZNF572Q7Z3I7 529 aaPredicted RBP22.48■■□□□ 1.19
PTPRF-207ENST00000436724 PCSK9Q8NBP7 692 aaKnown RBP22.48■■□□□ 1.19
PTPRF-207ENST00000436724 HNRNPLLQ8WVV9 542 aaKnown RBP22.48■■□□□ 1.19
PTPRF-207ENST00000436724 RPGRIP1Q96KN7 1286 aa22.48■■□□□ 1.19
PTPRF-207ENST00000436724 SMIM28A0A1B0GU29 152 aa22.48■■□□□ 1.19
PTPRF-207ENST00000436724 INHAP05111 366 aa22.48■■□□□ 1.19
PTPRF-207ENST00000436724 CD19P15391 556 aa22.48■■□□□ 1.19
PTPRF-207ENST00000436724 FAM193AP78312 1265 aa22.48■■□□□ 1.19
PTPRF-207ENST00000436724 ADAM22Q9P0K1 906 aa22.48■■□□□ 1.19
PTPRF-207ENST00000436724 DERAQ9Y315 318 aa22.48■■□□□ 1.19
PTPRF-207ENST00000436724 MEIS3P2A8K0S8 358 aa22.47■■□□□ 1.19
PTPRF-207ENST00000436724 DDX3YO15523 660 aaKnown RBP22.47■■□□□ 1.19
PTPRF-207ENST00000436724 CEP104O60308 925 aa22.47■■□□□ 1.19
PTPRF-207ENST00000436724 ACLYP53396 1101 aa22.47■■□□□ 1.19
PTPRF-207ENST00000436724 YWHAEP62258 255 aaKnown RBP22.47■■□□□ 1.19
PTPRF-207ENST00000436724 MRPS25P82663 173 aaKnown RBP22.47■■□□□ 1.19
PTPRF-207ENST00000436724 ITGA7Q13683 1181 aa22.47■■□□□ 1.19
PTPRF-207ENST00000436724 C11orf63Q6NUN7 778 aa22.47■■□□□ 1.19
PTPRF-207ENST00000436724 RNF180Q86T96 592 aa22.47■■□□□ 1.19
PTPRF-207ENST00000436724 SESTD1Q86VW0 696 aa22.47■■□□□ 1.19
PTPRF-207ENST00000436724 C1orf131Q8NDD1 294 aaKnown RBP22.47■■□□□ 1.19
PTPRF-207ENST00000436724 PXYLP1Q8TE99 480 aa22.47■■□□□ 1.19
PTPRF-207ENST00000436724 ELOVL4Q9GZR5 314 aa22.47■■□□□ 1.19
PTPRF-207ENST00000436724 AGO3Q9H9G7 860 aaKnown RBP22.47■■□□□ 1.19
PTPRF-207ENST00000436724 GOLGA2P5Q9HBQ8 144 aa22.47■■□□□ 1.19
PTPRF-207ENST00000436724 RBM12Q9NTZ6 932 aaKnown RBP22.47■■□□□ 1.19
PTPRF-207ENST00000436724 UVRAGQ9P2Y5 699 aa22.47■■□□□ 1.19
PTPRF-207ENST00000436724 MAP2K7O14733 419 aa22.46■■□□□ 1.19
PTPRF-207ENST00000436724 CILPO75339 1184 aa22.46■■□□□ 1.19
PTPRF-207ENST00000436724 COMTP21964 271 aa22.46■■□□□ 1.19
PTPRF-207ENST00000436724 TNNC1P63316 161 aa22.46■■□□□ 1.19
PTPRF-207ENST00000436724 MGAT3Q09327 533 aa22.46■■□□□ 1.19
PTPRF-207ENST00000436724 BEND6Q5SZJ8 279 aaPredicted RBP22.46■■□□□ 1.19
PTPRF-207ENST00000436724 DCAF12L1Q5VU92 463 aa22.46■■□□□ 1.19
PTPRF-207ENST00000436724 SLC4A11Q8NBS3 891 aa22.46■■□□□ 1.19
PTPRF-207ENST00000436724 YY1P25490 414 aa22.46■■□□□ 1.19
PTPRF-207ENST00000436724 MARCKSL1P49006 195 aa22.46■■□□□ 1.19
PTPRF-207ENST00000436724 PTP4A2Q12974 167 aa22.46■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms