RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 EVI5O60447 810 aa13.29□□□□□ -0.28
CIITA-202ENST00000381835 CD4P01730 458 aa13.29□□□□□ -0.28
CIITA-202ENST00000381835 ITGB3P05106 788 aa13.29□□□□□ -0.28
CIITA-202ENST00000381835 SERPING1P05155 500 aa13.29□□□□□ -0.28
CIITA-202ENST00000381835 NOP2P46087 812 aaKnown RBP13.29□□□□□ -0.28
CIITA-202ENST00000381835 GUCY2FP51841 1108 aa13.29□□□□□ -0.28
CIITA-202ENST00000381835 MBTPS1Q14703 1052 aa13.29□□□□□ -0.28
CIITA-202ENST00000381835 SLC39A5Q6ZMH5 540 aa13.29□□□□□ -0.28
CIITA-202ENST00000381835 CD302Q8IX05 232 aa13.29□□□□□ -0.28
CIITA-202ENST00000381835 C1orf127Q8N9H9 656 aa13.29□□□□□ -0.28
CIITA-202ENST00000381835 ZMAT2Q96NC0 199 aaKnown RBP13.29□□□□□ -0.28
CIITA-202ENST00000381835 LRRC1Q9BTT6 524 aa13.29□□□□□ -0.28
CIITA-202ENST00000381835 PLEKHA5Q9HAU0 1116 aa13.29□□□□□ -0.28
CIITA-202ENST00000381835 DAAM1Q9Y4D1 1078 aa13.29□□□□□ -0.28
CIITA-202ENST00000381835 PCDHA13Q9Y5I0 950 aa13.29□□□□□ -0.28
CIITA-202ENST00000381835 CAPN6Q9Y6Q1 641 aa13.29□□□□□ -0.28
CIITA-202ENST00000381835 UMODL1Q5DID0 1318 aa13.28□□□□□ -0.28
CIITA-202ENST00000381835 MGEA5O60502 916 aa13.28□□□□□ -0.28
CIITA-202ENST00000381835 SHOX2O60902 331 aaPredicted RBP13.28□□□□□ -0.28
CIITA-202ENST00000381835 MOCS3O95396 460 aa13.28□□□□□ -0.28
CIITA-202ENST00000381835 TRAF7Q6Q0C0 670 aa13.28□□□□□ -0.28
CIITA-202ENST00000381835 USP38Q8NB14 1042 aa13.28□□□□□ -0.28
CIITA-202ENST00000381835 HDAC7Q8WUI4 952 aa13.28□□□□□ -0.28
CIITA-202ENST00000381835 APOBEC3GQ9HC16 384 aaKnown RBP13.28□□□□□ -0.28
CIITA-202ENST00000381835 SIX4Q9UIU6 781 aa13.28□□□□□ -0.28
CIITA-202ENST00000381835 C2CD2Q9Y426 696 aa13.28□□□□□ -0.28
CIITA-202ENST00000381835 NUB1Q9Y5A7 615 aa13.28□□□□□ -0.28
CIITA-202ENST00000381835 MEIS3P2A8K0S8 358 aa13.28□□□□□ -0.28
CIITA-202ENST00000381835 AKR1B10O60218 316 aa13.28□□□□□ -0.28
CIITA-202ENST00000381835 ASS1P00966 412 aaKnown RBP13.28□□□□□ -0.28
CIITA-202ENST00000381835 SELPP16109 830 aa13.28□□□□□ -0.28
CIITA-202ENST00000381835 PRLRP16471 622 aa13.28□□□□□ -0.28
CIITA-202ENST00000381835 FERP16591 822 aa13.28□□□□□ -0.28
CIITA-202ENST00000381835 GJA8P48165 433 aa13.28□□□□□ -0.28
CIITA-202ENST00000381835 BFSP2Q13515 415 aa13.28□□□□□ -0.28
CIITA-202ENST00000381835 SGSM1Q2NKQ1 1148 aa13.28□□□□□ -0.28
CIITA-202ENST00000381835 CCDC181Q5TID7 509 aa13.28□□□□□ -0.28
CIITA-202ENST00000381835 LRRC8DQ7L1W4 858 aa13.28□□□□□ -0.28
CIITA-202ENST00000381835 PACS2Q86VP3 889 aa13.28□□□□□ -0.28
CIITA-202ENST00000381835 SPATA4Q8NEY3 305 aa13.28□□□□□ -0.28
CIITA-202ENST00000381835 ADAM2Q99965 735 aa13.28□□□□□ -0.28
CIITA-202ENST00000381835 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.28□□□□□ -0.28
CIITA-202ENST00000381835 PDCD11Q14690 1871 aaKnown RBP13.28□□□□□ -0.28
CIITA-202ENST00000381835 TET1Q8NFU7 2136 aa13.27□□□□□ -0.28
CIITA-202ENST00000381835 SCN1AP35498 2009 aa13.27□□□□□ -0.28
CIITA-202ENST00000381835 TLR3O15455 904 aaKnown RBP13.27□□□□□ -0.28
CIITA-202ENST00000381835 IRAK1P51617 712 aa13.27□□□□□ -0.28
CIITA-202ENST00000381835 KIF11P52732 1056 aa13.27□□□□□ -0.28
CIITA-202ENST00000381835 GCNT1Q02742 428 aa13.27□□□□□ -0.28
CIITA-202ENST00000381835 PTK2Q05397 1052 aa13.27□□□□□ -0.28
CIITA-202ENST00000381835 ITIH3Q06033 890 aa13.27□□□□□ -0.28
CIITA-202ENST00000381835 ZNF699Q32M78 642 aa13.27□□□□□ -0.28
CIITA-202ENST00000381835 ALKAL1Q6UXT8 129 aa13.27□□□□□ -0.28
CIITA-202ENST00000381835 NT5DC4Q86YG4 428 aa13.27□□□□□ -0.28
CIITA-202ENST00000381835 RNF169Q8NCN4 708 aa13.27□□□□□ -0.28
CIITA-202ENST00000381835 RUBCNQ92622 972 aa13.27□□□□□ -0.28
CIITA-202ENST00000381835 LPPQ93052 612 aa13.27□□□□□ -0.28
CIITA-202ENST00000381835 ALS2CR12Q96Q35 445 aa13.27□□□□□ -0.28
CIITA-202ENST00000381835 OSBPL9Q96SU4 736 aa13.27□□□□□ -0.28
CIITA-202ENST00000381835 DPP3Q9NY33 737 aa13.27□□□□□ -0.28
CIITA-202ENST00000381835 CNTN3Q9P232 1028 aa13.27□□□□□ -0.28
CIITA-202ENST00000381835 DMGDHQ9UI17 866 aaKnown RBP13.27□□□□□ -0.28
CIITA-202ENST00000381835 SQORQ9Y6N5 450 aa13.27□□□□□ -0.28
CIITA-202ENST00000381835 SSU72P8A0A1W2PR75 194 aa13.27□□□□□ -0.29
CIITA-202ENST00000381835 GOLGA8KD6RF30 607 aa13.27□□□□□ -0.29
CIITA-202ENST00000381835 ITGA4P13612 1032 aa13.27□□□□□ -0.29
CIITA-202ENST00000381835 TCP1P17987 556 aaKnown RBP13.27□□□□□ -0.29
CIITA-202ENST00000381835 POLR2BP30876 1174 aaKnown RBP13.27□□□□□ -0.29
CIITA-202ENST00000381835 SLC7A5Q01650 507 aa13.27□□□□□ -0.29
CIITA-202ENST00000381835 TRIM60Q495X7 471 aa13.27□□□□□ -0.29
CIITA-202ENST00000381835 ZNF572Q7Z3I7 529 aaPredicted RBP13.27□□□□□ -0.29
CIITA-202ENST00000381835 ZNF571Q7Z3V5 609 aaPredicted RBP13.27□□□□□ -0.29
CIITA-202ENST00000381835 PLCD3Q8N3E9 789 aa13.27□□□□□ -0.29
CIITA-202ENST00000381835 SHC3Q92529 594 aa13.27□□□□□ -0.29
CIITA-202ENST00000381835 C18orf25Q96B23 403 aaPredicted RBP13.27□□□□□ -0.29
CIITA-202ENST00000381835 ZFP42Q96MM3 310 aa13.27□□□□□ -0.29
CIITA-202ENST00000381835 PSMB7Q99436 277 aa13.27□□□□□ -0.29
CIITA-202ENST00000381835 CAPS2Q9BXY5 557 aa13.27□□□□□ -0.29
CIITA-202ENST00000381835 FAM107BQ9H098 131 aa13.27□□□□□ -0.29
CIITA-202ENST00000381835 ADAMTS1Q9UHI8 967 aa13.27□□□□□ -0.29
CIITA-202ENST00000381835 AGAP1Q9UPQ3 857 aa13.27□□□□□ -0.29
CIITA-202ENST00000381835 HYOU1Q9Y4L1 999 aa13.27□□□□□ -0.29
CIITA-202ENST00000381835 BZW2Q9Y6E2 419 aaKnown RBP13.27□□□□□ -0.29
CIITA-202ENST00000381835 SMIM28A0A1B0GU29 152 aa13.26□□□□□ -0.29
CIITA-202ENST00000381835 DCDC2CA8MYV0 355 aa13.26□□□□□ -0.29
CIITA-202ENST00000381835 OPA1O60313 960 aa13.26□□□□□ -0.29
CIITA-202ENST00000381835 KRT5P13647 590 aa13.26□□□□□ -0.29
CIITA-202ENST00000381835 CXCR5P32302 372 aa13.26□□□□□ -0.29
CIITA-202ENST00000381835 PRKCIP41743 596 aa13.26□□□□□ -0.29
CIITA-202ENST00000381835 MRPS25P82663 173 aaKnown RBP13.26□□□□□ -0.29
CIITA-202ENST00000381835 TLE2Q04725 743 aa13.26□□□□□ -0.29
CIITA-202ENST00000381835 GFPT1Q06210 699 aaPredicted RBP13.26□□□□□ -0.29
CIITA-202ENST00000381835 CUL2Q13617 745 aa13.26□□□□□ -0.29
CIITA-202ENST00000381835 HACE1Q8IYU2 909 aa13.26□□□□□ -0.29
CIITA-202ENST00000381835 PAWRQ96IZ0 340 aaKnown RBP13.26□□□□□ -0.29
CIITA-202ENST00000381835 XYLT2Q9H1B5 865 aa13.26□□□□□ -0.29
CIITA-202ENST00000381835 NXF1Q9UBU9 619 aaKnown RBP13.26□□□□□ -0.29
CIITA-202ENST00000381835 TUBGCP4Q9UGJ1 667 aa13.26□□□□□ -0.29
CIITA-202ENST00000381835 SCN5AQ14524 2016 aa13.26□□□□□ -0.29
CIITA-202ENST00000381835 CYP26A1O43174 497 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms