RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 TMEM245Q9H330 911 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 C6orf203Q9P0P8 240 aaPredicted RBP6.76□□□□□ -1.33
UPF2-201ENST00000356352 GRID1Q9ULK0 1009 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 ABCA8O94911 1581 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 RSPH10B2B2RC85 870 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 EXTL3O43909 919 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 ENO1P06733 434 aaKnown RBP6.76□□□□□ -1.33
UPF2-201ENST00000356352 RSPH10BP0C881 870 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 VCAM1P19320 739 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 FGFR4P22455 802 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 ALDH1A3P47895 512 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 FMO5P49326 533 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 HNRNPH2P55795 449 aaKnown RBP6.76□□□□□ -1.33
UPF2-201ENST00000356352 SBK1Q52WX2 424 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 CCDC92Q53HC0 331 aaPredicted RBP6.76□□□□□ -1.33
UPF2-201ENST00000356352 C6orf10Q5SRN2 563 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 LUZP2Q86TE4 346 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 ANKMY2Q8IV38 441 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 MKNK1Q9BUB5 465 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 C20orf96Q9NUD7 363 aaPredicted RBP6.76□□□□□ -1.33
UPF2-201ENST00000356352 TBC1D23Q9NUY8 699 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 ZNRF3Q9ULT6 936 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 SNX12Q9UMY4 172 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 NEU2Q9Y3R4 380 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 TNS3Q68CZ2 1445 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 FAM47DPA6NHR8 397 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 VWA5AO00534 786 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 DYRK3O43781 588 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 SNRPAP09012 282 aaKnown RBP6.76□□□□□ -1.33
UPF2-201ENST00000356352 LRRC74AQ0VAA2 488 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 SREBF2Q12772 1141 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 MTMR2Q13614 643 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 RABGAP1LQ5R372 815 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 TDRD10Q5VZ19 366 aaKnown RBP6.76□□□□□ -1.33
UPF2-201ENST00000356352 KRT78Q8N1N4 520 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 SPATA4Q8NEY3 305 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 SLC35G2Q8TBE7 412 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 CYFIP2Q96F07 1278 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 CNBD2Q96M20 576 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 ZNF512Q96ME7 567 aaPredicted RBP6.76□□□□□ -1.33
UPF2-201ENST00000356352 RBM15Q96T37 977 aaKnown RBP eCLIP6.76□□□□□ -1.335e-10■■■■■ 33.7
UPF2-201ENST00000356352 PRMT1Q99873 361 aaKnown RBP6.76□□□□□ -1.33
UPF2-201ENST00000356352 ISCA1Q9BUE6 129 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 TMEM8AQ9HCN3 771 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 PALMDQ9NP74 551 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 POLE3Q9NRF9 147 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 KLHL11Q9NVR0 708 aa6.76□□□□□ -1.33
UPF2-201ENST00000356352 FLT1P17948 1338 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 FAM47E-STBD1D6RA91 191 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 NMT2O60551 498 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 STAG3L1P0CL83 205 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 CYP19A1P11511 503 aaPredicted RBP6.75□□□□□ -1.33
UPF2-201ENST00000356352 ODC1P11926 461 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 VCLP18206 1134 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 MDH1P40925 334 aaKnown RBP6.75□□□□□ -1.33
UPF2-201ENST00000356352 PTK7Q13308 1070 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 LRRC14Q15048 493 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 TAF1CQ15572 869 aaPredicted RBP6.75□□□□□ -1.33
UPF2-201ENST00000356352 SNRNP35Q16560 246 aaKnown RBP6.75□□□□□ -1.33
UPF2-201ENST00000356352 TSGA10IPQ3SY00 556 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 C12orf60Q5U649 245 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 CCNJLQ8IV13 435 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 KIAA2013Q8IYS2 634 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 ZNF280CQ8ND82 737 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 KCNV2Q8TDN2 545 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 CCDC126Q96EE4 140 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 ATXN7L3BQ96GX2 97 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 SLITRK1Q96PX8 696 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 SEPT5Q99719 369 aaPredicted RBP6.75□□□□□ -1.33
UPF2-201ENST00000356352 CINPQ9BW66 212 aaPredicted RBP6.75□□□□□ -1.33
UPF2-201ENST00000356352 PLA2G12BQ9BX93 195 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 YIPF3Q9GZM5 350 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 EIF3LQ9Y262 564 aaKnown RBP6.75□□□□□ -1.33
UPF2-201ENST00000356352 PCDHB7Q9Y5E2 793 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 IGSF9BQ9UPX0 1349 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 PRDM15P57071 1507 aaPredicted RBP6.75□□□□□ -1.33
UPF2-201ENST00000356352 GSG1L2A8MUP6 293 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 HBP1O60381 514 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 CD2BP2O95400 341 aaKnown RBP6.75□□□□□ -1.33
UPF2-201ENST00000356352 ATP1A1P05023 1023 aaKnown RBP6.75□□□□□ -1.33
UPF2-201ENST00000356352 APRTP07741 180 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 HMGCS2P54868 508 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 CACNB2Q08289 660 aaPredicted RBP6.75□□□□□ -1.33
UPF2-201ENST00000356352 ATF7IP2Q5U623 682 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 ANKS6Q68DC2 871 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 NOTUMQ6P988 496 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 LVRNQ6Q4G3 990 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 BTNL9Q6UXG8 535 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 CD302Q8IX05 232 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 RSPH1Q8WYR4 309 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 EME1Q96AY2 570 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 PABPC5Q96DU9 382 aaKnown RBP6.75□□□□□ -1.33
UPF2-201ENST00000356352 TMA16Q96EY4 203 aaKnown RBP6.75□□□□□ -1.33
UPF2-201ENST00000356352 MCEEQ96PE7 176 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 GPR63Q9BZJ6 419 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 GOLPH3Q9H4A6 298 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 RMND5AQ9H871 391 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 MLXIPLQ9NP71 852 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 RAB6BQ9NRW1 208 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 STMN3Q9NZ72 180 aa6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms