RNA–Protein interactions for RNA: YER139C

RTR1, Transcript of CTD phosphatase, yeast

Gene RTR1, Length 681 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RTR1	YER139C	CIS3	P47001	227 aa		0.87	□□□□□ -2.27
RTR1	YER139C	BUD25	P85052	153 aa		0.87	□□□□□ -2.27
RTR1	YER139C	SNO1	Q03144	224 aa		0.87	□□□□□ -2.27
RTR1	YER139C	YDR476C	Q03362	224 aa		0.87	□□□□□ -2.27
RTR1	YER139C	MAK3	Q03503	176 aa		0.87	□□□□□ -2.27
RTR1	YER139C	MRPS8	Q03799	155 aa		0.87	□□□□□ -2.27
RTR1	YER139C	GRX8	Q05926	109 aa		0.87	□□□□□ -2.27
RTR1	YER139C	YLR031W	Q07978	186 aa		0.87	□□□□□ -2.27
RTR1	YER139C	DGA1	Q08650	418 aa		0.87	□□□□□ -2.27
RTR1	YER139C	YPL162C	Q12042	273 aa		0.87	□□□□□ -2.27
RTR1	YER139C	RIO1	Q12196	484 aa	Known RBP	0.87	□□□□□ -2.27
RTR1	YER139C	PEX11	Q12462	236 aa		0.87	□□□□□ -2.27
RTR1	YER139C	YCL012C	Q8J0M4	134 aa		0.87	□□□□□ -2.27
RTR1	YER139C	IKI3	Q06706	1349 aa	Known RBP	0.87	□□□□□ -2.27
RTR1	YER139C	MBF1	O14467	151 aa	Known RBP	0.86	□□□□□ -2.27
RTR1	YER139C	CDC8	P00572	216 aa		0.86	□□□□□ -2.27
RTR1	YER139C	RAS2	P01120	322 aa	Known RBP	0.86	□□□□□ -2.27
RTR1	YER139C	CDC7	P06243	507 aa		0.86	□□□□□ -2.27
RTR1	YER139C	YLR156W	P0CE96	114 aa		0.86	□□□□□ -2.27
RTR1	YER139C	YLR159W	P0CE97	114 aa		0.86	□□□□□ -2.27
RTR1	YER139C	YLR161W	P0CE98	114 aa		0.86	□□□□□ -2.27
RTR1	YER139C	GCY1	P14065	312 aa	Known RBP RIP-Chip data	0.86	□□□□□ -2.27	not detected
RTR1	YER139C	YCR090C	P25654	182 aa	Known RBP	0.86	□□□□□ -2.27
RTR1	YER139C	YER135C	P40082	130 aa		0.86	□□□□□ -2.27
RTR1	YER139C	FMP32	P43557	207 aa		0.86	□□□□□ -2.27
RTR1	YER139C	TMA22	P47089	198 aa	Predicted RBP	0.86	□□□□□ -2.27
RTR1	YER139C	EAF6	P47128	113 aa		0.86	□□□□□ -2.27
RTR1	YER139C	SBH2	P52871	88 aa		0.86	□□□□□ -2.27
RTR1	YER139C	YGL235W	P53071	178 aa		0.86	□□□□□ -2.27
RTR1	YER139C	JAC1	P53193	184 aa		0.86	□□□□□ -2.27
RTR1	YER139C	NRK1	P53915	240 aa		0.86	□□□□□ -2.27
RTR1	YER139C	MZM1	Q03429	123 aa	Predicted RBP	0.86	□□□□□ -2.27
RTR1	YER139C	AIM34	Q03673	198 aa		0.86	□□□□□ -2.27
RTR1	YER139C	HNT1	Q04344	158 aa	Known RBP	0.86	□□□□□ -2.27
RTR1	YER139C	NEJ1	Q06148	342 aa		0.86	□□□□□ -2.27
RTR1	YER139C	SHH4	Q06236	168 aa		0.86	□□□□□ -2.27
RTR1	YER139C	GRE1	Q08969	168 aa		0.86	□□□□□ -2.27
RTR1	YER139C	TSC3	Q3E790	80 aa		0.86	□□□□□ -2.27
RTR1	YER139C	YFR032C-B	Q8TGU2	87 aa		0.86	□□□□□ -2.27
RTR1	YER139C	FKS1	P38631	1876 aa	Known RBP	0.86	□□□□□ -2.27
RTR1	YER139C	CMD1	P06787	147 aa	Known RBP	0.85	□□□□□ -2.27
RTR1	YER139C	SEC4	P07560	215 aa	Known RBP	0.85	□□□□□ -2.27
RTR1	YER139C	GRX2	P17695	143 aa	Known RBP	0.85	□□□□□ -2.27
RTR1	YER139C	SNC2	P33328	115 aa		0.85	□□□□□ -2.27
RTR1	YER139C	AME1	P38313	324 aa		0.85	□□□□□ -2.27
RTR1	YER139C	YAP3	P38749	330 aa		0.85	□□□□□ -2.27
RTR1	YER139C	YHR022C	P38763	256 aa		0.85	□□□□□ -2.27
RTR1	YER139C	CTR2	P38865	189 aa		0.85	□□□□□ -2.27
RTR1	YER139C	TVP23	P38962	199 aa		0.85	□□□□□ -2.27
RTR1	YER139C	MTW1	P39731	289 aa		0.85	□□□□□ -2.27
RTR1	YER139C	IRC22	P40006	225 aa		0.85	□□□□□ -2.27
RTR1	YER139C	PGD1	P40356	397 aa		0.85	□□□□□ -2.27
RTR1	YER139C	ERG10	P41338	398 aa	Known RBP	0.85	□□□□□ -2.27
RTR1	YER139C	PRM10	P42946	383 aa		0.85	□□□□□ -2.27
RTR1	YER139C	YFH7	P43591	353 aa		0.85	□□□□□ -2.27
RTR1	YER139C	AIF1	P52923	378 aa		0.85	□□□□□ -2.27
RTR1	YER139C	YIP3	P53633	176 aa		0.85	□□□□□ -2.27
RTR1	YER139C	YNR062C	P53748	327 aa		0.85	□□□□□ -2.27
RTR1	YER139C	COG5	P53951	403 aa		0.85	□□□□□ -2.27
RTR1	YER139C	YNL010W	P53981	241 aa	Known RBP	0.85	□□□□□ -2.27
RTR1	YER139C	YDR274C	P87283	123 aa		0.85	□□□□□ -2.27
RTR1	YER139C	TMA20	P89886	181 aa	Predicted RBP	0.85	□□□□□ -2.27
RTR1	YER139C	CYT2	Q00873	224 aa		0.85	□□□□□ -2.27
RTR1	YER139C	ARR2	Q06597	130 aa		0.85	□□□□□ -2.27
RTR1	YER139C	BRX1	Q08235	291 aa	Known RBP	0.85	□□□□□ -2.27
RTR1	YER139C	YML100W-A	Q8TGT0	57 aa		0.85	□□□□□ -2.27
RTR1	YER139C	MET5	P47169	1442 aa		0.84	□□□□□ -2.27
RTR1	YER139C	TIM9	O74700	87 aa		0.84	□□□□□ -2.27
RTR1	YER139C	QCR6	P00127	147 aa		0.84	□□□□□ -2.27
RTR1	YER139C	YOL162W	P0CF19	215 aa		0.84	□□□□□ -2.27
RTR1	YER139C	NSP1	P14907	823 aa	Known RBP	0.84	□□□□□ -2.27
RTR1	YER139C	RPB3	P16370	318 aa	Known RBP	0.84	□□□□□ -2.27
RTR1	YER139C	PET9	P18239	318 aa	Known RBP	0.84	□□□□□ -2.27
RTR1	YER139C	YET1	P35723	206 aa		0.84	□□□□□ -2.27
RTR1	YER139C	FES1	P38260	290 aa		0.84	□□□□□ -2.27
RTR1	YER139C	YER076C	P40049	302 aa		0.84	□□□□□ -2.27
RTR1	YER139C	ICE2	P40499	491 aa		0.84	□□□□□ -2.27
RTR1	YER139C	GVP36	P40531	326 aa	Known RBP	0.84	□□□□□ -2.27
RTR1	YER139C	RPA43	P46669	326 aa		0.84	□□□□□ -2.27
RTR1	YER139C	ARO8	P53090	500 aa	Known RBP	0.84	□□□□□ -2.27
RTR1	YER139C	YGR050C	P53231	118 aa		0.84	□□□□□ -2.27
RTR1	YER139C	TIM13	P53299	105 aa		0.84	□□□□□ -2.27
RTR1	YER139C	YNL184C	P53876	108 aa		0.84	□□□□□ -2.27
RTR1	YER139C	YLR460C	P54007	376 aa		0.84	□□□□□ -2.27
RTR1	YER139C	PET191	Q02772	108 aa		0.84	□□□□□ -2.27
RTR1	YER139C	GRX5	Q02784	150 aa		0.84	□□□□□ -2.27
RTR1	YER139C	SWP1	Q02795	286 aa		0.84	□□□□□ -2.27
RTR1	YER139C	YMR295C	Q03559	197 aa		0.84	□□□□□ -2.27
RTR1	YER139C	YOL014W	Q08110	124 aa		0.84	□□□□□ -2.27
RTR1	YER139C	YOR342C	Q12182	319 aa		0.84	□□□□□ -2.27
RTR1	YER139C	PSF1	Q12488	208 aa		0.84	□□□□□ -2.27
RTR1	YER139C	YPL229W	Q99395	206 aa		0.84	□□□□□ -2.27
RTR1	YER139C	REP2	P03872	296 aa		0.83	□□□□□ -2.28
RTR1	YER139C	CPA1	P07258	411 aa	Known RBP	0.83	□□□□□ -2.28
RTR1	YER139C	DDI2	P0CH63	225 aa		0.83	□□□□□ -2.28
RTR1	YER139C	DDI3	P0CH64	225 aa		0.83	□□□□□ -2.28
RTR1	YER139C	PBI2	P0CT04	75 aa	Known RBP	0.83	□□□□□ -2.28
RTR1	YER139C	RPL35A	P0CX84	120 aa	Known RBP	0.83	□□□□□ -2.28
RTR1	YER139C	RPL35B	P0CX85	120 aa	Known RBP	0.83	□□□□□ -2.28
RTR1	YER139C	AHC2	P25649	128 aa		0.83	□□□□□ -2.28

Retrieved 100 of 5,963 RNA–protein pairs in 30.4 ms